RNA id: XM_021618343.2


Basic Information

Item Value
RNA id XM_021618343.2
length 4623
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110533815
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37353926 ~ 37359996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATAGATAATCCCATAATGAACAAACAGAGCTTCGTGAGTTACCTTAAAGTCGTGACGCCAGATTGCCATGGAAACTAGACTACGCTCGCAGCTGAGAGAAAACAGTGCGCTGTAGAACTTCAGTTTGTTTCCTTAAGCGCCACTGTCGTGTTGGGTTGGACAGCGATCAAGAACGAACCTACATCTTCTAAAGATAATAGCGCATTGTGCACGGTGTCTACGGGTCGGAGATCCCAATTTAACCTGTTGGATATCACTTATTGTTGTTTTGCTTACTATACTTTGGCTAAGTTCTACCCTTTCCTCAGCAGTCAGTTAAACCCAAGATAATTGATCTCCAAATGGATAGAAGATTCCACAACTTGACTCTGGAGCAAGTCCAGACTCTGGACCAGGTGTTGACAGAGGTGATCCCCATCCACGGCAGAGGGAACTTCCCAACCCTGGAGGTGAGACCCAAGGACATCATCCACGTAGTGAAGGACCGGCTGTTGGAGAGGGAGATCAGGGTCAGGGACATCCGCCTCAATGGCTCCACCGCCAGCCATGTGATGGTCAGGGACAATGGCACGGGCTACAGAGACCTGGACATCATCTTTGGAGTGGAGCTGCCCAGACAGGAGGACTTCCAGGTCATCAAGGAGGTGGTGCTGGGCAGCCTGCGTGACCTCCTTCCCCGTGGGGTTAACAGACGCAAGATCACCTGCCTCACCATGAAGGAGGCCTATGTGCAGAAGATGGTAAAGGTTTTCAATGAGCACGACCGCTGGAGCCTTATCTCACTGTCCAATAACAGGGGTAAAACAGTGGGGCTCAGGTTTGTAAGTTCCCTGCGACGCCAGTTTGAGTTCAGTGTGGACTCCTTCCAGATTATATTGGACCGTATGCTGGAGTCAtactgggagactgagaggagGCAAGGAGTTCAGTGTGAGGGATTGGAGTCACACAATGGCATTGtgttacatccagatagaggggCAGAGAAAGCCATAATGGTACCCCAGTATTCTTCCACCTCTGAGAATCTAAAAGAGGATAAAGACAAAGATCCAATGATGACTCGCGTCGCTGACAGTCCGTGCCACAGTGAACAGGTTGTTGTTCAAGAGGAAGAATCATCACATCCAATGAATGTGCATGCAACTGGAAAACAAGAGCCACTGGAAGTGTTAGAGAGAGCAGAGCTAGACCTGGGGACTCTGGAGAATGAGGAagaggtagaagaggaggggGTGGTAAAGGTTGATACAGTACTTGAGATAAGAGTAGAGGAAAAAATGCCATTTGTTCAGAATACAGATTATCCCTCACTTATATCCTCCTCCAAAATATTGACAGACGTGATGGAACCTCTGGTGTCAAATATATCTGTAAACCCTCAAAGTAACATAGAGGAGTCACTGATCTCTGAGTCAAAAGACATCAAGCCATCCCCAGTGTTGCTCACAGAGAACTCAGTGCAAGAGCAACTTCAAGTGATGCCTCAATCCACATCCCAAGCCTGCACTGCTGTCACACAAAACGTACATCTTGAACATTTATTCCCTCCGCCAGCCAAGAAAACCTGTAACACATCCCAGGGAATTGTCCCTGACTATTGCCCCTCACCTAAACCACCAAGGAAGATGTCACGGAAGATGAGCAGCATCTCATCACTCCCTGAAAAATGGTCTTTATTAAAAGATTTGTCAGATCTGACAACACAGCTGTTTGAGCCTATAGAAATACTTCCAACACCTCAACCAAATCACTCTTTATTAGACACTGATCAAGGCCATTATTCATCCTCCTCAGGGTCCAGACAGAGGAACTCAGAGGGCACTAAAACATTCACAGACCACCTTACTCCAGCCGTTTCATCCCAGGATAAAAACATCTCACCCCGTACCGTAGAACAAATAGTCAGGGTGAAATATTCAAAAAAGCCTCCAGATTCAGAAGCTTCTGAGGAATCATTGTCCCTTCAAACAACAGGGAACCAAGTCCCAGAGACTGAACCTGCTGCTACTCAGGAACTAGCGCCACCAGAGACAACCACGGTCTGTCCACGGGCAGGGGCAAGTTCGGCCCCAAGGGACAAGGCCAGCATCACTGTGGTAGCAGAGTGCATGTATGGGGACTTTGAGCAAGCCATGGATCATCTGCGTTTCCGACTGATTGCCACCCATAACCCAGAGGAGATCAGAGGAGGTGGGCTTCTGAAGTATAGTGACCTGCTCGTGAGGAACTTCAGGCCAGCCAGCGAGACAGAGATCAAGTCCCTAGAGCGCTACATGTGCTCCCGCTTCTTTATTGACTTTCCTGATGTTAGCGAGCAGCAGCGCAAGATCGAGGCCTACCTGCGCTGCCACTTTGTTGGCGACGAGGAGACTAGCAAGTATGACTATCTGATGACCTTGCGTCGGGTGATAGATGAGAGTACAGTGTGTCTGATGGGAcatgagaggagacagacactcaATATGATCACTGTCCTGGCCCTGAGGGTACTGGGGGAACAGAACGCCATCCCCAACACTGCCAACGTCACCTGCTTCTACCAGCCTGCGCCATACATGGCTGACCCCATATTCAGCAGCTACTACATTCCCCAGGCAGCACAGCCACCTCTGCTTTACCACCCCTACCCTTTACATGTCCACATGCAGACCGGCCTGGTGTAGCCCCAGCATGTGAGTGGGGGAGAGCATGCGGGCTGCATTCTATATGGTTCTACTCTGTAACCAGAGGCAcaaaattgattttaaaaagaAGAGGCATGAGCGCAATTTGTTCAATGCTTTGAAAAGACGCTGCCTATGACGTGAGACAGCGGACACAAAATGGGGAGAGTTGGAGCTTTATCTTTGGATAAAGGCCACCACGTCACTCTTTTCAAATGAAAAATGTTTTGATTGAGAGAGAATAGCTGATTACTCACTGAGAGCAAGCTGCAAGGGAAAATGTCACAGAGGGAAATGACAGTTTACGTGGCTGTTTCAGCTGCAGCAGCAGGCTAGGCTTTGTCTTTGTTACCTTCCTGTGACGCGGGGATCCTGTACTGTCAATTAATGACAAAGTTGTTCAAACATGACAGAAATACTGTATGAACAGTTGACTGAGCGTTTCTTATCATATACTATAGTGAGGTAGAGGACGGGCAAGTATGCTGCAGTGGATGAAGGTATAAACACTTCAAAATAATTAGACATACCATAGTTGATTTAGACAAAAATCACAAGACATTATGTTGAAATTAGACAGTATCTGATCAAGCCAAAAAACTGCGCTGTGTTTTAGAGAGAACCTGATGAGTTGTTCTTCACGAATGTAAGTGAATTAACTTTCTTGAAGTGATCACACTTgtgtttaaaggtagactcagcaaaaTGACGTTGCCACGAGCAACACCACagggacagcaggtagcctagtggttagagcgttgggccagtaactgaaaggttgctggatcgattccctgagttgacaaggtagaaagaaatctgtcattctgcccctgaacaaggcagttaacccattgttccctggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctatttaaataaaggttcaatttaaaacatTGTCCCCAAAAACTATTGAGATGCAAgaccagtcacacacagtatctgcacaGGTGTGCTTTAAGCTGTTCACAGCATTGTAGCCAGGGCACTGAAAAACCAGAGAAGTTGAGCCTCGCGCTTTAACGCTCTTAGTTCTTGcgggaaattgacccactatgctgtcaTATCGCTGAATCTACCTTTAATATTGTATTGTAACGTCACAAATCTTGATATGACATCATCAGCTGTGCTTAGATCTTGGGGAAATGTGGCGTAGAGTACATATTGATTTGTTTTCTGGGTGTTAATGTCTGACTGCATCCTTGGTAAATGTTTGAGTGTCTAATGAGTGACTACATGAATTTCAGGGCGAAATCAGGGTTAAGATAAGACAGATTCCAAAGTGTTTTAAACTATCACCCCTCAGTTTCGTTATGTGGTAGTATTTAGAAGTAAGATTTAGAGATCTAAATTGTAACTGTGAGACAGAATGACACTCACACCAAACATAGATTCACTGTTACTTATTTATGTGTGCCATTTCATTGTAAAAGACACCCAAGAGgtcatatgtaaaaaaaaataaaaaaataaataaaaaaaaaaatagaaaaagtgTATTTTCAGCACAGGCGTGGCAGTAGGTGAGTTCCCTAACGGGCAATTGAATCTGAAGCACAATGTAAACGTACGCAACCTTGTTGTTAATTAGTGAACTATAGATGTATCGGATGTATGTGTGATTCACCAATTCAATATAGATGAAAGTCTAATGTAAATGTAACTGTGCAGTAATCTGGTACTTCTCATAAACCATAGCGTTGATTGTAAATTGTAATACAGTAATCTATGTTGGGATTCTTTAGGTATAATCATTTTGTCTCATTATCGGAACTTTATCTGGAGCTACTGTCATGTATCGGTAGAGAAACATCATGCATTTTCATGATCTCTGTATCCCCATTCATATTCAAATATTTGCTCAATTTGTATGGTCATTTTGATAATAAACCTCATGCATTTAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006219 lncRNA upstream 10046 37343426 ~ 37343880 (+) True G884271
TU1006214 lncRNA upstream 18255 37335284 ~ 37335671 (+) True G884266
TU1006211 lncRNA upstream 24090 37329533 ~ 37329836 (+) True G884263
TU1006158 lncRNA upstream 25737 37327953 ~ 37328189 (+) True G884210
TU1006209 lncRNA upstream 26717 37326985 ~ 37327209 (+) True G884261
TU1006242 lncRNA downstream 2215 37362211 ~ 37365265 (+) True G884287
TU1006851 lncRNA downstream 163089 37523085 ~ 37524800 (+) False G884828
TU1006849 lncRNA downstream 163600 37523596 ~ 37524800 (+) False G884828
TU1006850 lncRNA downstream 163600 37523596 ~ 37525037 (+) True G884828
TU1006853 lncRNA downstream 167631 37527627 ~ 37528005 (+) True G884830
XM_036990207.1 mRNA upstream 33312 37314915 ~ 37320614 (+) False nup62l
XM_036990208.1 mRNA upstream 33312 37314915 ~ 37320614 (+) False nup62l
XM_036990209.1 mRNA upstream 33312 37314915 ~ 37320614 (+) False nup62l
XM_021618340.2 mRNA upstream 33312 37314916 ~ 37320614 (+) False nup62l
XM_021618338.2 mRNA upstream 33312 37314917 ~ 37320614 (+) False nup62l
XM_021618347.2 mRNA downstream 44351 37404347 ~ 37417371 (+) False LOC110533818
XM_021618350.2 mRNA downstream 44539 37404535 ~ 37414884 (+) False LOC110533818
XM_021618349.2 mRNA downstream 48472 37408468 ~ 37414884 (+) True LOC110533818
XM_021618352.2 mRNA downstream 59097 37419093 ~ 37478728 (+) False LOC110533820
XM_036990212.1 mRNA downstream 59097 37419093 ~ 37478728 (+) True LOC110533820
TU1005877 other upstream 502773 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 552341 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1058379 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 1667353 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 1937688 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 1395513 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 4352331 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 4352331 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 4352331 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 4718219 42078215 ~ 42153778 (+) False G890228

Expression Profile