RNA id: XM_036990213.1


Basic Information

Item Value
RNA id XM_036990213.1
length 2966
RNA type mRNA
GC content 0.46
exon number 2
gene id agtr2
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37497022 ~ 37518509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAACCCAAATTTGCACCAGACCCTAAGTTAATTGACCTTGGCCAGGCCAGCCCTGAGGATGCGGACCTGTACAGCACGCGTGGATGAAGAATGACAGGAAGAGAAGGCCTTAGTGGGAGTTGGCTGTAAAAGCAATCACGGACAGAGTACCCATGGCATCGACACACTCTAACCTCTCAATGGCCACCAACTCGTCAGAAGATCTAATGATCAATTCTTCCTCATGTgattccatctccccctctctgcatCAGAACAAGCTGATCCCCACCATCTACAGTGTCATCTTTGTCCTTGGTTTCGTGGGCAATATCTTGGTGGTGTTCGTGTTATGTCAAAAGTCCAACCGTAAAACAGTGGCCAACACTTACATTGTAAACTTGGCCCTTTCAGATCTGTTGTTCCTGATCAGCCTGCCCTTCTGGGCAATCTACTACTCCTTTGACTACAACTGGATGTTTGGTGGGCTGATGTGTAAGCTATGTGGCTGCCTCCTCTCCCTGAACGTCTACGCCAGCATCTACTTCATCACCTGTATGAGTGTGGACCGATACAGAGCCATTGTCTATCCCCTCCAGTCTCAGTGCAGCAGGAACCTGTGTCGGGCGCGTGTGATCAGCGGTGTGATCTGGACCATTGCCGGCCTCATGACCATCCCCACCATGGCCTTCCGAGACACCTACCACCTGAAGGAGCTGGGGGTCACGGCCTGCGTCCTCACCTACCCACCTACCCAGCCCTACTGGTTCCCAGGCCTGGCCCTGACCAAGAACATTCTGGCCTTCTTGGTGCCCTTCACAGTCATCGCCAGCTGCTACTGCCGCATCGGGAAGCACCTCCTGGGGGGACAGCCCAGCCTGGACAAGAGTTCCAGCAACCTGGACCGCGTAATGAAGATGGTGGTGGCTGTGGTGCTGGCCTTCTTCGTCTGCTGGTTCCCCTTCCACGTGCTGACCTTCCTGGACGCCCTGAGCACCCTGGGGGTGATGCACAGCTGTTGGGTGCGCCAGGCCATCATTACCCTGATGCCCTTCACCCTCTGCCTGGGCTTCTCCAACAGCGCCATCAACCCTTTCCTCTACTGCTTTGTGGGGAACCACTTCCGGGAGCAGCTGTGGCGGCTGTACGAGGAGAAGGCTCCCAGGCTGTCCCAAAAGAGAGACTCCATCAGCACCAGGCTCAGCTCCTTCTCCAGGAAGCTCAGCGACCTCAAGGACACAGGGCCACTGGAGACTCTGGACCAACACAGTAGGGGCCCCTAGTCTAGGGAGGTTACATGGCAGGACTATGAGAGGCCTGTCTGTCAGATGTGTAACAGTTGACACCGGGGATCCTGAATAACCCCCAGGCCTAATCTCCAGGGGacgttaccccccccccccctatctacTCCTAATTAGGGACACCCTGCCGGCTGGACAGAGGGAATATAAACATAGATTTAAATGTCAGTTTAACATCCCATGCCACCAAGCTCATGTTAGGGGGAAGGGATATTATATCACCAAATCTACAGTATATGTGCTGGGTAAACCTGTCATGTTTTCTGAGATACACAGGCCAGTGTGATAATAAGTGTGTGAAATATACAACTACAGTGTATGTGCCTTTGTACTAGTTACAATAATGTGATATGTGTATGTTGTTTTTATTGTATATAAGTAACAAAAATATGTCAATGAACACAGAGCCTTCTAAACGGCAAGAAAAGGTCCATGCAAACGCCTACTGTGAACTGTGTAATTTGTCTCTTGAACCATAATTAACATTGTATTGTGTCAAATGTACAACCCTTATCAGGATACGCTATGAATGATATGTTTTCCAGTCACTCTTCATTTGATATAACAGAACAATGAAAGCCAGACAGTAACGGCAGTCTTCTTGGTgtgaaaacaaaacatatattcAGTTAAGGCCATGATCAAGTTGAACATGGGAAAGCCAGGAGTTGAGTTTGCATCACATTGTAGCAATTTGAAGATGCATTTGATTGTTTGTCATATAATCACAACTTGCTGTTTTTTTCCTCCTGACATTTCTGTTTGCAACAGTAATGGAGACAAGGACATAGACTGAGTAACAAGCATTGATATAGGCAGTTTTACTGCCACTCTGTGGCTGGGTTTGATAACTGCAGGTGCAAAGGAATTCTCTCTGATTGATAATTGTGTAGTTTTTACTTCAAATTGTAGTTTTAGTTATTAAAACCCTTCCAGACCCATCATATTATCAACTAATATGGTCTGAACATTACAATGAACAGAATAGGGAAAAACAAAGCAAGGTGATGTACATGTAAATACAGGTACTGTACTTCAATACTGTTTCCTGATGTGTTTTCCTAATGACCAgagagtacagatgtaggatcttaattggatCACCGTGTTGCATGAGAATGTATAGTGTATTGGACATATTTGAGGTTTAagaaggcttctgaagtttgtaatttccactttgaaatttcagattGATTTTACCTTTCGAAAAATGTGTCAACCCCTGCAATCTTCTTTTCATGAATTagaattcacatttcctgttgctgcaggattattttcctgctgtagcaaactggctcaaattaagatcctacatctgtaagccTATGTGTGATCTTTTCTTTCCTCTTAGGATATGATATGATTTCCTGTTGATGCTACCGTACTGTAAATACTACCATACCGATTGTGTGTCAGTGCTATTCATTCATAGTGATGGCAAGCTTCAGTGTGATAGAGCATGTGTCCGTTTACCATGGAGCTACCAGCAAGGCCACTACTGAGAGGATCCTGGGTGCAGTGGGGAGAGATGGGAGCCATCTACTCCGAGACAGTGAAAGTGAGGCCAATACCTACTGCCTATGTGTTCTGTGAGTACTTGAACAGTATTGTTGATCCATCGTAGGTTTAGTTATTACCATTTTGATTGACTTTAGCTATAAATTCACATTTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006242 lncRNA upstream 131757 37362211 ~ 37365265 (+) True G884287
TU1006219 lncRNA upstream 153142 37343426 ~ 37343880 (+) True G884271
TU1006214 lncRNA upstream 161351 37335284 ~ 37335671 (+) True G884266
TU1006211 lncRNA upstream 167186 37329533 ~ 37329836 (+) True G884263
TU1006158 lncRNA upstream 168833 37327953 ~ 37328189 (+) True G884210
TU1006851 lncRNA downstream 5969 37523085 ~ 37524800 (+) False G884828
TU1006849 lncRNA downstream 6480 37523596 ~ 37524800 (+) False G884828
TU1006850 lncRNA downstream 6480 37523596 ~ 37525037 (+) True G884828
TU1006853 lncRNA downstream 10511 37527627 ~ 37528005 (+) True G884830
TU1006852 lncRNA downstream 11035 37528151 ~ 37528428 (+) True G884829
XM_021618352.2 mRNA upstream 18294 37419093 ~ 37478728 (+) False LOC110533820
XM_036990212.1 mRNA upstream 18294 37419093 ~ 37478728 (+) True LOC110533820
XM_021618347.2 mRNA upstream 79651 37404347 ~ 37417371 (+) False LOC110533818
XR_005053659.1 mRNA downstream 186933 37704049 ~ 37710683 (+) False LOC118966772
XM_021618359.2 mRNA downstream 359812 37876928 ~ 37896375 (+) False LOC110533825
XM_021618358.2 mRNA downstream 359818 37876934 ~ 37896375 (+) True LOC110533825
XM_021618370.2 mRNA downstream 456223 37973339 ~ 37992659 (+) False LOC110533830
XM_021618371.2 mRNA downstream 485483 38002599 ~ 38039709 (+) False msna
TU1005877 other upstream 645869 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 695437 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1201475 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 1810449 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 2080784 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 1238393 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 4195211 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 4195211 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 4195211 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 4561099 42078215 ~ 42153778 (+) False G890228

Expression Profile