RNA id: TU1006991


Basic Information

Item Value
RNA id TU1006991
length 1883
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC118966772
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37704049 ~ 37710683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAAGAGCCCTCTTTTCTGGGGTTTAACAATGCTACGCATCCTACaatcctacaattctacacattttgccatgaggctgagagaaaatgttgctgttttaaagctaatttcagTACTTGTTCCATTTACAACTTGTTTTAGTCCTCTGGTCTACTGATTTCAGCCACTGCATGCTGTGACATGGACTGGATGGTGACACATCTTCTTCAAACTTCCTGATTGAATACTGGGGTCTTCAGTGGTTCCAGAAGCAAGGCACTTACCGTGGAGTACAGCCacattctctttctgtctcacagCCATTCTGTCAACATGTATTGTATGTAACCACTCAAAGTCATGCAAACCTCTACAGATGTGAGCGCTGACATATTCACTCTGTCCAATTCTTTAATCTTGTCTGGGATACACACCGAGTATAACAAACATTAGCAACtccttccaaatattgagttgaATCCCCCCCATTTTGCCCTAagaacagactcaattcatcggggtatggactctacaaagtgtcgaaagcattccacgggaatgctggcccatgttgactccaaaggaCCCCACagctgtcaagttggctggatgtcatttggggggtggaccattcttgatacacatgagaaactgatacacacaggaaacaaccCAGCAGCGTGTCCGTTCTTAAAacaaaccggtgagcctggcacctactaccataccccgttcaaagacacttaaaacTTTTGTCTTctctattcaccctctgaatggcacaatccatgtctcaattgtctcaaggtatAAAACTCCTTCTTTAatcggtctcctccccttcatctacactgattgaagtggatttaacaagtgacatcaataaggagttatagctttcacctggattcacctggtcagtctgtggaaagagcaggtgttcttaatgttttatatactcagtgtatgttttAGTTGAGATACCTGTATGACATACACTAATGAAAATGTATTCACTCTGGACATGAGACTTTATTTTAGACCTTTTAaatattgaaagtcactgaggtcttcagtaaggctattatactgccaatgtttgtctatggtgattgcatgaatagccgaatccactaatttgaaggagtgtccacatacttttgtatatagagTGTCTCTCCAATTTACAATGTCCGATTGAAAAACAAAGTGACATATCAGATTCATACATGTACTTCTCATTTTATATataatatttttgtatttattattttattattatgattatttatttaataatgcatttttaaaatatatttttggaggTGAAACATGGGCTTTAATAATGTAGTATTACTATTGTTATTGTTGGTCCCGTGTatctcagttagtagaacatgatgcttgcaacgccagggttgtgggtttgattcccatggagAACCAGTATGAAGTTGTATGCCCTCACTGGATAAGATTGTCTACTTAAATGTTATTATTGTGTTGTATGGCAACATACTACAATTAAAATAATGTGTCCCTCTGTTCGTGTATTGCCCAACTGTTAGCTCAAGCTGTAGAAGACCTCACTTCCTCCAGATTCTGTCTTGTTTTGGATGCAGGTCTGCTGCAGGGGGGGAGTGCTCCAACCTCTCCTCAGAGGTGTGAAGTATCTGTTTACATGACACACCTCTGATCTCTCATGGGACCTTTGACCCGCCAATCATCACCCCTGACCCTGGCCTGGGCATATCAGAACATTAGGCCGGGACGGATATATAAGGGGTCAGCCAACCCAAGCCGGGGTCATGTCAGTCTCACTTTTCCAGAGAAAGGATTACATCACAAAGAGCTCAACTTTTTCCATGGACTCATTCCTACATGAACTGGATTACAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1006907 lncRNA upstream 110675 37593156 ~ 37593406 (+) True G884884
TU1006899 lncRNA upstream 118458 37585406 ~ 37585623 (+) True G884876
TU1006896 lncRNA upstream 121524 37582355 ~ 37582557 (+) True G884873
TU1006892 lncRNA upstream 124511 37579366 ~ 37579570 (+) True G884869
TU1006891 lncRNA upstream 125067 37578700 ~ 37579014 (+) True G884868
TU1007198 lncRNA downstream 50831 37761426 ~ 37762047 (+) True G885162
TU1007284 lncRNA downstream 80852 37791447 ~ 37791664 (+) True G885244
TU1007292 lncRNA downstream 87211 37797806 ~ 37798046 (+) True G885252
TU1007305 lncRNA downstream 96058 37806653 ~ 37806951 (+) True G885265
TU1007309 lncRNA downstream 104035 37814630 ~ 37814829 (+) True G885269
XR_005053657.1 mRNA upstream 185572 37510479 ~ 37518509 (+) True agtr2
XM_036990213.1 mRNA upstream 186965 37497022 ~ 37517116 (+) False agtr2
XM_021618353.2 mRNA upstream 206535 37478921 ~ 37497546 (+) True LOC110533821
XM_021618352.2 mRNA upstream 225353 37419093 ~ 37478728 (+) False LOC110533820
XM_021618359.2 mRNA downstream 166333 37876928 ~ 37896375 (+) False LOC110533825
XM_021618358.2 mRNA downstream 166339 37876934 ~ 37896375 (+) True LOC110533825
XM_021618370.2 mRNA downstream 262744 37973339 ~ 37992659 (+) False LOC110533830
XM_021618371.2 mRNA downstream 292004 38002599 ~ 38039709 (+) False msna
XM_021618372.2 mRNA downstream 306024 38016619 ~ 38039709 (+) True msna
TU1005877 other upstream 852928 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 902496 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1408534 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 2017508 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 2287843 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 1044914 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 4001732 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 4001732 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 4001732 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 4367620 42078215 ~ 42153778 (+) False G890228

Expression Profile