RNA id: XM_021618365.2


Basic Information

Item Value
RNA id XM_021618365.2
length 3122
RNA type mRNA
GC content 0.45
exon number 2
gene id amer1
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 37939057 ~ 37943052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACACACCCCGCTCTCACTACAACTACCAGAATTCAATGCGTACATTAACAAGAGGCTCAAGACTGTTTGTGTTGCACGACAGAATAAAGTGATTCGGATTTATTCTTTGTAATTCTGGCGTGTAGAAGCCCAACAAGATTGTTGCCATGGAGCACTGTGACGGAAATGAGCCAGCAAGTGATACAAAGCATTTGTCTGCTGGCTGTGAGCAGACGGCCATGGGTGACCAGGATTCACAGACTGAGGTGAAGCCTCCATCTGACATTTCTGACGCTGTACCCCTTGAGCATCAGCCATCAGGGAAACTGAGGAGGACTGCCTTAAGATTCTTTGGAGGACGCAAAAGCATCTGTGTTTTACCAAACTTCTTTGGGGGAAggaacaaaaatctaaacaagTGGTCCTCTAAGAAGGGAGTCAGCAAGAGTAAAACTCATGATGGACTTAGCAAAGCAGACTGGGAGGACAGTCTGGGAATTGGATATGTCCCAGCAGGATATTTTGAGTACCACAACCAGAAAGATACTACTGGAAAGGCTTGTAGGGAATTTGGTCACCCTACTGGTGATCAGAAGTCATTCTCTCTTCCCCGGCAGAAAAAGGGTTTGCGAGAACTTTTTAACAGCATCAGGCGTTGTAGAAAGAATAGAAATTGTGATTTTGAAAAAAATGAAATGGTTGAGAATTCTCATGTCTGCAACAAAGAGGTGCCTATTGCCCAGACTATCATTGACCAAAATGACATGGAGTGCCTGGGCAGTTTGTCTGAATCCAATGTGCCTGTTTTGGCAAACGTTGACGATTGTTTGACAATTGCTCCTGAATGTATTAATGTTGATGTCATAGTGTCTGAGAAAGACCTGGTGAAACAAGGGAGTCTGGATTCTCTGATAGGGGAACTGAAGAAAGGTGAGGATATGGTAGAGACACTCCATATAAACACAGAACCAGATTCTTTCCCGAAGACTAACATAGAGTCTATTGTGAACGTCCAGCTGCCTACTGGCTCATCTCAGATGAGCTTGATGTTTGGTGATGTGGCCTCTCTAAAGAGTTTTGACTCGCTCACTGGCTGTGGTGACATAATAGCTGATCAAGACGACGACAGTATTGCAGATTCTCAGGGCTCAGTCTCAGCGGAAAGGAGTCGAAATGCAGGCAAACGGAGTTCCTGTTATGTTACGTACCAGGGTGGAGGAGAAGAAATGGCCACCCCTGTTAAGGTGGACGGGGATTATCTCCACAACCTCTGGGAAAATGAGGTTGCAGAGGACGCTTGCTATACCCACAGCCACGAAGAAGACTTTCTAGAGCACAGTGAAAGTCCTAGGATGACACCTGAAGAGCCATCTAGCTCCTATACCATGGACATCAGCATCAACAGCAATGGTGCTCTTGGAGTTACAGAGACCACCCTTACATCTTCGGATGTGATGACCCCACAGAGTGAAAATCAAGTGTCAGTTCCTAACAGCGATGAGGGTTACTATGACTCTACCACCCCAGGACAAGATGAAGACGGACGTGACAAAGTTGACAGGATCAGGACCGATAGACTACCAAGGGACAGTTATAGTGGCGATGCACTGTATGAGCTTTTTGAGCCTGATGACAGTCTTATCAGTCCACCTTTTGAAAAAGCTAAGCTGCCCGTCTCTGATCCACTTGAGTTTTTAGACATGTCAGCTCAGTGTGGTGGTGAAGATGTAAATGCTGTGTTCGCTCCTGAAACGGGTCTAATTGAAGAGGACAGGCTAACTGGGAATAGGGAGAAAATGCTTGGCAACCCTAAATTGTCAGATGCCGTTTTTGGCACCTTTACCTCAACATGTCAATCACAAGAAATTGACTATGAGCAAAACAAGCCACAGTCCCCACGGTTAAGAGGAAATCATGATCTATCTAAAACAAAGAATGACTTGGAGGATGACCAGACAGTTTGCTTCTCCCAAGCTCTAGTGGACTTCACAAAACAATCACATGTTTATAGTAATTCAACTGAAAGCATGGGAGGCTCTGAGTCAAACTTTGCCCAAAACATGCAAGCCCTCCCAGCCATTGTCACATTTGATGTCGTGGACATGGATAACGAGGGGGAATGTGACCAGCAGATGGATATGGTAATGGAGGAGGAATACATCACGTCGCCTTATGAAGTGTTTGAAGAAAGCTACCTGCAAAAGGATGCGTTTGCTGAATGTGACTTACGTATGTTTGACCTCCTTGAACAGAGTCTCAATAATACTTGGGGAATTGCCAGCCTGCCACGTCACCTTAGCCTTACACAAGTCAATCGGTCGAGTCCACTGGCTCCTCTGCTGAGTCCTTTGGCCTTAAATAGGAGGAGTAGATCCCTGGACACGGAGAGCTTGGAGTTAGAGATGACTGACATGTATTTAGGGAGTGGGGCAGCACTAGCGTCTTGCCCTAGAACTGAAAGGGACTCGAAGAGAGTGTCCTCGCTTCACCGCAAAAATAATGGATACATTTCCACTTCAGAAAACCGGGATAATAGACAGATCATGTTTCCGTCATGGCAGCCAGAGACTGAGGGGACTGTAACGCACCCACAAGCAGATGGGAAAAGAACAGAGCAGACGTACAGTCTCTATCAAACTCAAAACAGACGAATGGTATCATTCAGTCAGCCTGTCAGTCGAGTCCCAAACTGTAAATCTCAACAGATCTCAGCTAGCAAAATGACTGACAGAGTATCCTGTAATTATGTCTCTCAGATTACAGGACCGTTACATAGGCCATCTCATCTTCCTTTGCAATCAGAATCCTGTCGGCCCCATGCCCCCTATGGGAGATCAGTTAAGGCATCAGATGGTGGTGGTGAGGCGCTTTTTTACACATCGACCGTTAGCTCTCATCCTTAAAATCAACATAATAACATGCCTCAACCTTGGTTGTGAGTCTGGCAGTTCTGTAAGCAGGGCTCTAAACTGTAAGCAGGGCTCTAAACTAACTTTAAAAATGTAGGAACACCAGAAATGTGATTTTTAAAATTGGTTAAGATACAGTATAGCCTAGCTACTTCTAAAGCACACGTTGTGCCCTAGAAACGAATATGAAACCCtgtaaacacttttttttattattaaaagcAAAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007517 lncRNA downstream 118862 37819902 ~ 37820195 (-) True G885454
TU1007515 lncRNA downstream 120934 37817890 ~ 37818123 (-) True G885452
TU1007514 lncRNA downstream 122912 37815901 ~ 37816145 (-) True G885451
TU1007293 lncRNA downstream 141041 37797680 ~ 37798016 (-) True G885253
TU1007285 lncRNA downstream 147446 37791372 ~ 37791611 (-) True G885245
TU1007580 lncRNA upstream 25768 37968811 ~ 37969025 (-) True G885511
TU1007584 lncRNA upstream 29045 37972088 ~ 37972315 (-) True G885515
TU1007600 lncRNA upstream 48189 37991232 ~ 37992645 (-) True G885526
TU1007606 lncRNA upstream 57553 38000596 ~ 38000908 (-) True G885532
TU1007607 lncRNA upstream 58098 38001141 ~ 38001341 (-) True G885533
XM_036990214.1 mRNA downstream 13005 37899074 ~ 37926052 (-) True LOC110533826
XM_036990216.1 mRNA downstream 16171 37899074 ~ 37922886 (-) False LOC110533826
XM_021618363.2 mRNA downstream 18325 37899074 ~ 37920732 (-) False LOC110533826
XM_036990215.1 mRNA downstream 18786 37899074 ~ 37920271 (-) False LOC110533826
XM_021618362.2 mRNA downstream 24665 37899074 ~ 37914392 (-) False LOC110533826
XM_021618366.2 mRNA upstream 2436 37945479 ~ 37947381 (-) False asb12a
XM_021618367.2 mRNA upstream 2436 37945479 ~ 37947880 (-) True asb12a
XM_021618368.2 mRNA upstream 15364 37958407 ~ 37965805 (-) False mtmr8
XM_021618369.2 mRNA upstream 15364 37958407 ~ 37965806 (-) True mtmr8
XM_021618374.2 mRNA upstream 122763 38065806 ~ 38112815 (-) False arhgap20b
TU1007025 other downstream 235271 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 620193 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 1273700 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 1546530 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 1548143 36389997 ~ 36390914 (-) True G883753
TU1007856 other upstream 295907 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 1240655 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 1274270 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 1911923 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 2553671 40496714 ~ 40547367 (-) True LOC110533878

Expression Profile