RNA id: XM_021618372.2


Basic Information

Item Value
RNA id XM_021618372.2
length 2292
RNA type mRNA
GC content 0.43
exon number 10
gene id msna
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38002599 ~ 38039709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAGAGTTGGAGTTTGCCATCCAGGCCAACACAACGGGAAAGCAACTCTTTGACCAGGGTCCTGGACCAGCACAAGCTCAACAAGGAGCAGTGGGAGGAGAGAATCCAGGTGTGGCATGAGGAACACAAGGGCATGCTCAGAGAGGATTCAATGATGGAGTACCTGAAGATCGCCCAGGACCTGGAGATGTACGGTGTCAACTACTTCAGCATCAAGAACAAGAAAGGATCAGAGTTGTGGTTAGGAGTAGACGCCCTGGGACTCAACATTTACGAACAAAATGATAAGATGACACCTAAAATTGGATTCCCATGGAGTGAAATCAGGAATATTTCCTTCAACGACAAGAAGTTTGTCATCAAACCCATTGACAAGAAAGCACCAGACTTTGTATTCTATGCTCCACGACTGCGTATCAACAAGCGCATCCTGGCACTTTGCATGGGCAACCATGAGCTGTATATGCGTCGCCGCAAACCAGACACCATCGAGGTACAGCAGATGAAGgcccaggccagagaggagaaGAACCACAAGAAGATGGAGAGGGCACTGCTGGAGAAcgaaaagaagaagagagaacttgctgaaaaagaaaaggaaaagattgaaaaggagaaggaggagcTTATGGAGAGACTGAAACAGATTGAGGAACAGACAAAAAAAGCTCAGCAAGAGTTGGAGGAGCAGACACGGAGGGCCCTGGAGTTGGAGCAGGAGAGGAAGCGTGCTCAGGAGGAGGCGGAGCGTCTGGAGAAGGAACGCAGGATGGCTGAGGAGGCCAAGACCGCCCTGCTCCAGCAGTCTGAGAACCAGATGAAGAACCAGGAACACTTGGCCACGGAACTGGCTGAGCTGACCTCAAAGATCTCCCTACTGGAGGACGCCAAGCAGAAAAAGGAGGATGAGGCAACGCAGTGGCAACAGAAGGCCTGCATGGTGCAGGAGGACCTGGAGAAGACCAAAGAGGAGCTGAACAGCAAAATCATGGCATCACACATACAGGAGCCTATGCAGGCCGAGAACGAGCATGACGAGAACGACGAGACCAGCGACCAGGCCAGTGCCGAGTTCACGGGCGGCATCTCCTACAAAGACCGCAGCGAGGAGGAGCGTATGACCGAAGCCGAGAAGAACGAGCGTGTGCAGCAACACCTGCTGGCTTTGAGCTCGGAGTTGGCCATCGCTCGAGATGAGACCAAGAAAACCGCAAATGACATCATCCATGCGGATAATGTGAAAGCTGGACGGGACAAGTACAAGACCCTCCGGCAGATTCGGTCGGGCAACACCAAGCAGCGTATAGACGAGTTTGAGTGTATGTGATGTATCTTGTTTGCAACTACTATAACCCCCACAGCGGTGCCATACTTGGTCCATTCATTCTAGACTGCAGACCTGCCTCACACAAGCTACAGTGCCTTTTACCCAAACAAGACCAGAATACATATCAAAAAGCAAAACAAAAGTACAGCAAAATGTATATGAATAATGGTGCACAAATCACATTACAAGTAATGTTATTCAGAATTATGAAATAAGTGGATGCATCAGGGACATTTTTTATAGAAAAATGGTTTAAAGTGAATAAAATTTGATAATACATTTTCCAGACTTGGGTTATAGATGGAGGGTGTTTTTATTGATTATAATTTAGTTATTTTTAAGTGATTCATCTCTCACACTGTTTTAAACTAAAAATTAACAAAACAACACAATGCAGGACAGCTGCAATTATTATGTTATGGTTGGCCACATTTTAGGTGTCATTATTTCAGAGCAGGTTTGTTTGTTTTGAAGTAGACCTGTTACTGTAAGCATTTTCCACAAATTAAGAGAACATCAAACTGTAATTAGATTGTAggtttttattatattataattttaGGCATTTAAAGAGATTGTTGTCTTTCTAAGAGGACATCTTTGTTTGGAAACTCTCAACAGTATTACTTTTACATAAGATTTTATTAAGTCCATATGAAATAAGTGCTGTAATACCACGTTTTCCATTTTCAGAGAGACACATACTTATGAATGACTCTTTATAGACCAAGTGTATCTGCTATGACATATAGCCATGCACACTAGTAGCTACCATGATTAGGGGTTTGTTTTTGTATATCAATCCTAAGTATTGATAAGTATTTTATTATATGGAATTTTTAGAAATATGATTCTAAGgcctgtcttgaaggagttattTTGTGATTTGGATTTTTCAATAAAACAGGTTATGATGTGTAAAAAGATGGATGTCTTATGAAATGTAAAGTTGTCTGCATG

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007429 lncRNA upstream 16036 38000356 ~ 38000583 (+) True G885379
TU1007412 lncRNA upstream 23958 37991440 ~ 37992661 (+) True LOC110533830
TU1007406 lncRNA upstream 50090 37966326 ~ 37966529 (+) True G885356
TU1007361 lncRNA upstream 57548 37936993 ~ 37959071 (+) True G885318
TU1007363 lncRNA upstream 75415 37885017 ~ 37941204 (+) True G885320
TU1007465 lncRNA downstream 7670 38047379 ~ 38048064 (+) True G885413
TU1007471 lncRNA downstream 18038 38057747 ~ 38058025 (+) True G885419
TU1007662 lncRNA downstream 77451 38117160 ~ 38117985 (+) True LOC110533835
TU1007672 lncRNA downstream 199025 38238734 ~ 38240280 (+) True G885595
TU1007741 lncRNA downstream 227579 38267288 ~ 38269588 (+) True G885657
XM_021618370.2 mRNA upstream 23960 37973339 ~ 37992659 (+) False LOC110533830
XM_021618359.2 mRNA upstream 120244 37876928 ~ 37896375 (+) False LOC110533825
XM_021618358.2 mRNA upstream 120244 37876934 ~ 37896375 (+) True LOC110533825
XR_005053659.1 mRNA upstream 305936 37704049 ~ 37710683 (+) False LOC118966772
XR_005053657.1 mRNA upstream 498110 37510479 ~ 37518509 (+) True agtr2
XM_036990217.1 mRNA downstream 20053 38059762 ~ 38063313 (+) True LOC110533834
XR_005053660.1 mRNA downstream 77445 38117154 ~ 38117987 (+) False LOC110533835
XM_021617169.2 mRNA downstream 138995 38178704 ~ 38230238 (+) False ar-beta
XM_021617170.2 mRNA downstream 138998 38178707 ~ 38230238 (+) False ar-beta
NM_001124185.1 mRNA downstream 140047 38179756 ~ 38230238 (+) True ar-beta
TU1005877 other upstream 1165466 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 1215034 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1721072 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 2330046 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 2600381 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 715800 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 3672618 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 3672618 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 3672618 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 4038506 42078215 ~ 42153778 (+) False G890228

Expression Profile