RNA id: XM_021618377.2


Basic Information

Item Value
RNA id XM_021618377.2
length 1995
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110533836
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38127426 ~ 38135731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACCAGAAGCGCAGCCCGTGAGGCATGTCAGGGCATGTCCAGATCGGATGAAGTGGCACTGCATAGACTATCGATAGCGTGCACTAGTATAGACTCGTGAAAACGATAGAAAAAGGTGCCCTTAAGTATCTTCGCCAACCTTAATGGATcgagttacATTGCTGTCATGGATTGTTCTCAAACCCAGTACTACTTGAGTGGGGACTGCCACCCTTGTCTGCAATGTGGACCAGGACAAGAGCTGTCAGAGGACTGTGGTTATGGAAGTGGATGGTCGGCTTCTTGCATCCCCTGTAGTGTCAAGACTTATAAAGAGGGCTGGGGTTACCACAACTGCAAATTCTGTCAGTCGTGTAAACGCATAAACAGGCACCAGAAGTCACTGTGCACCTCTAAGAGCAATGCTATCTGTGGGGAGTGCTTGCCAGGATTCTACAGTAAGACACGGATGGATGGCTTGCAGGAATTGGAGTGCATGCCGTGTGGTCCCTCCTCCACCACTGAGCAGCAGTGCAGCCGAAGCAGAAGAGTTGATGTGGGAAAAGTCTGGAGCCCAGAAGGCCCAGCCCAAAATGCTGCTGTCATCACCACCATTTCTTTCGCCCTGGTTACCATGACAATCTTCCTCTCCGCTGCCTTGTTTATATACTTCAGACGTACCTTACTAAAGAAAATATTTAAAGGATGCCTGGCTCCTCAAAGCACAAGTCAGAGTGACATGGAGTGTGCAGCATCCCCAGTGAAAGTGGTCACGCTGAATCTGGAGCAGCAAAGCCAGGACTCGGGTGCATGTGATAACTCTACCACCACTGCAGACATGTTGGCCAGACTGCAGTCCAATGTGGACATGACTGTCCCTCTGGGGTTCATTCTACTAAACCCTGACCTTAAAACTCAGGACCAAATCAACCTGCTGGAAACCCAGCCACTGAGCAGTGACGGTTACGATGCTTCTGAGCTGCAGGATAGCCCTCCCTATCAGCATGTACCAGTGGAATGCACTGAGCTAGACTTCCACAGCACTGCAGCCCTCCACAGTGCCACAGACCCAGATTGTAGCTCTGTGAGCCTGGGGATTACTGCGATATCCAAGATTAAGGATGGCCCTTCTGGAGACGGGTCAGGAGGAAGACAACTGAGGAGTCCGCCTGCCTGCCCAGAGGAGCAAACTGACAGCTGTTGGAGCAGCCATCATCAACCCTGCTACAGCAGTAATGCGATGGAAGAAACACTGAGCCTGCTGAAGAAGTGTATCCGAATCATGCAAGGTGTCCATCTAGGCAGGCTGCCACAGGCCTTGGTGGATACTCTGGCTTTGAAGCTGGACCCAACATTCCCAGGAGTACAGAACTACCAGCAGGTGGCGCTGAAGATGGGCGTACCTCACGAGTTGCTCAAAGGCCTGTGCGGGTTTGATCACGTCTTTCGGTACCTTTCCTCCTGCACTCTACTAACAGTACCTGACCTGCTCCACACGTTCTACCTGCTGCAGCGGCTCGACACTCTGCTCCTGCTGTGTGAATACGCCATGCAGAGCCAGACTCAGAGCCAGGTCACAGGATGCACATTTTACTGTTAATACTGACAACGCTTCTGCCAATACAGCCCAGAGGGCTGACATAATCAGCATGCGTACTACTGAACTAGAACCTACCTGGGACAACGAAATTGCTCAAACTCTCGGGTGGggatgtgtaaatatttgtttttaattcCGAATggattatattttattttttacctggtttcacatgtagtgtgtgtgaatgttaatGTGATATAAGCCACTCTATGTTACAATTATTTTGTCATGCAGCAAATGCTATGCAGGAGAATGATGCATTCATATTTGAAAAGTTTGTCAGAAGATACATTTTAAATGCATAAGTACTGTACAAATAGTgtttgtacagtactgtatttgtCTACTGAATGAATCAAGTTATATTAGTGTTACTTTTTATACATGTCTTGGACTTTTATAAACAAAATA

Function

GO: NA

KEGG:

id description
K05163 EDA2R, TNFRSF27, XEDAR; tumor necrosis factor receptor superfamily member 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007577 lncRNA downstream 63172 38062852 ~ 38064254 (-) True G885509
TU1007649 lncRNA downstream 66961 38060184 ~ 38060465 (-) True G885572
TU1007646 lncRNA downstream 70443 38056730 ~ 38056983 (-) True G885569
TU1007611 lncRNA downstream 87758 38038109 ~ 38039668 (-) True G885536
TU1007607 lncRNA downstream 126085 38001141 ~ 38001341 (-) True G885533
TU1007919 lncRNA upstream 99687 38235418 ~ 38235774 (-) True G885827
TU1007933 lncRNA upstream 157061 38292792 ~ 38293032 (-) True G885840
TU1007967 lncRNA upstream 219582 38355313 ~ 38355512 (-) True G885869
TU1008006 lncRNA upstream 261761 38397492 ~ 38397953 (-) True G885903
TU1008054 lncRNA upstream 301705 38437436 ~ 38437731 (-) True G885950
XM_021618373.2 mRNA downstream 14610 38065806 ~ 38112816 (-) True arhgap20b
XM_021618374.2 mRNA downstream 14611 38065806 ~ 38112815 (-) False arhgap20b
XM_021618369.2 mRNA downstream 161620 37958407 ~ 37965806 (-) True mtmr8
XM_021618368.2 mRNA downstream 161621 37958407 ~ 37965805 (-) False mtmr8
XM_021618367.2 mRNA downstream 179546 37945479 ~ 37947880 (-) True asb12a
XM_021618378.2 mRNA upstream 109285 38245016 ~ 38280006 (-) True LOC110533838
XM_036989348.1 mRNA upstream 200676 38336407 ~ 38434401 (-) True LOC110533841
XM_021618384.2 mRNA upstream 409321 38545052 ~ 38617748 (-) True LOC110533842
XM_021618398.2 mRNA upstream 792738 38928469 ~ 38945302 (-) False LOC110533851
XM_021618397.2 mRNA upstream 792738 38928469 ~ 38945732 (-) False LOC110533851
TU1007025 other downstream 423640 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 808562 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 1462069 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 1734899 36391103 ~ 36392527 (-) True G883754
TU1005623 other downstream 1736512 36389997 ~ 36390914 (-) True G883753
TU1007856 other upstream 103219 38238950 ~ 38240559 (-) True G885767
TU1009059 other upstream 1047967 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 1081582 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 1719235 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 2360983 40496714 ~ 40547367 (-) True LOC110533878

Expression Profile