RNA id: XM_021617170.2


Basic Information

Item Value
RNA id XM_021617170.2
length 1680
RNA type mRNA
GC content 0.49
exon number 9
gene id ar-beta
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38178704 ~ 38230238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCATTGCATGATGAGCAGTGATGTATCATCATGCATAATGGCAAAATTAGACCTGTGCTCTGCCACTGCATGTCCACGACACCGACTCAGCCAACTCTAACCTTTTTATTATAGGCTACTGTGGGTTGGTCCCGATTTTAACCCTATCTAAGGAATGTTGCCAAACTCAAAGGCTGACGGCAAAAAGGAACTCAAGGACTTTGGAAGCGAACTTCGTCCATACACAAACTTGCAGCAAACCAAACATTCTTAAAACCAAGCATTCAACTGTTCTATCGGGGTGTTCAGTTGTTTGATGACTTTTGTAGGTGCTTCACTCGTTTGTAGGCTATAACCTTTAAATGAATATTAAACGTTAGGATAGGCCAACTAGAGGAGTTTCATAGGTGAAACAGGCAGCGCTTCTCTCCGGCAACGCATTTGCCATATTGGACACAGACCATTTTTACCATTGCACACTCTCAAGAGGAAGAAAAAACACGATTATAGTCCATCGACAGAACTCATCACTTCAGGCAGTTTCATTTTCGCCTTCATGAATGGTTTGAGGGTGGCAGAGACCACATGTTCCCCATGGAGTTCTTCTTCCCGCCCCAGAGGACCTGTCTGATCTGTGCAGATGAAGCATCTGGCTGCCACTATGGAGCGCTAACCTGTGGCAGCTGCAAAGTGTTCTTCAAGAGAGCTGCAGAAGGTAAACAGAAATATCTGTGTGCCAGCAGAAACGACTGCACCATCGATAAGCTGAGACGGAAGAACTGCCCATCATGTCGACTGAGGAAGTGTTTTGAAGCTGGGATGACCCTCGGAGCACGTAAACTGAAGAAGATTGGACAGCTGAAGAGCCCGGAGGAGGATCTGCCTACCCAAGGCCCCACTGATGCCATCCAGTGTGTCTCTCCCCAGTCCGGCCTGACCTTCCATTCCCAGCTGGTGTTCCTCAACATCTTGGAGTCCATCGAGCCAGAGGTGGTTAATGCGGGACATGACCATTGCCAGCCGGACTCAGCTGCAGTGCTGCTCACCAGCCTCAACGAACTTGGGGAGCGCCAACTGGTCAAAGTGGTCAAGTGGGCCAAAGGCATGCCAGgttttcggAATCTGCATGTGGATGACCAGATGACAGTAATCCAGCATTCATGGATGGGGGTGATGGTGTTCGGCTTGGGATGGAGGTCCTACAAAAATGTCAATGCCAGAATGCTCTACTTCGCCCCAGACCTTGTTTTCAATGACCATCGGATGCACATCTCCAGCATGTTCGAGCACTGTATACGGATGAGACACCTCTCCCAGCAGTTTGTCCTGCTGCAAGTCACTCAGGAAGAGTTCCTCTGCATGAAGGCCCTGCTCCTCTTCAGCATCATTCCAGTCGATGGTCTTAAGAGCCAGAAGTACTTTGATGAATTGCGGCTGACCTACATCAATGAACTTGATCGTGTCATTAACTATGGAAGGAAGTCCAACTGCTCTCAGAGGTTCTATCAGCTCACCCGCCTCATGGATTCCCTCCAACCGATCGTGAGGAAACTCCAGCAGTTTACATTTGATCTGTTTATCCAGGCCCAGTCTCTGCCCACCAAGGTCAGCTTTCCAGAGATGATTGCCGAGATAATCTCAGTGCATGTGCCAAAGATCCTGGCAGGCTTGGCCAAACCAATCCTTTTCCACAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007662 lncRNA upstream 60722 38117160 ~ 38117985 (+) True LOC110533835
TU1007471 lncRNA upstream 120682 38057747 ~ 38058025 (+) True G885419
TU1007432 lncRNA upstream 123020 38001713 ~ 38055687 (+) True G885381
TU1007465 lncRNA upstream 130643 38047379 ~ 38048064 (+) True G885413
TU1007429 lncRNA upstream 178124 38000356 ~ 38000583 (+) True G885379
TU1007672 lncRNA downstream 8496 38238734 ~ 38240280 (+) True G885595
TU1007741 lncRNA downstream 37050 38267288 ~ 38269588 (+) True G885657
TU1007752 lncRNA downstream 59991 38290229 ~ 38290562 (+) True G885668
TU1007753 lncRNA downstream 60488 38290726 ~ 38291023 (+) True G885669
TU1007755 lncRNA downstream 62322 38292560 ~ 38292793 (+) True G885671
XR_005053660.1 mRNA upstream 60720 38117154 ~ 38117987 (+) False LOC110533835
XM_036990217.1 mRNA upstream 115394 38059762 ~ 38063313 (+) True LOC110533834
XM_021618371.2 mRNA upstream 138998 38002599 ~ 38039709 (+) False msna
XM_021618372.2 mRNA upstream 138998 38016619 ~ 38039709 (+) True msna
XM_021618370.2 mRNA upstream 186048 37973339 ~ 37992659 (+) False LOC110533830
XM_021618379.2 mRNA downstream 50100 38280338 ~ 38286660 (+) True LOC110533839
XM_021618381.2 mRNA downstream 80583 38310821 ~ 38336289 (+) False LOC110533840
XM_036990218.1 mRNA downstream 80583 38310821 ~ 38336289 (+) False LOC110533840
XM_036990220.1 mRNA downstream 80583 38310821 ~ 38336289 (+) False LOC110533840
XM_036990219.1 mRNA downstream 98460 38328698 ~ 38336289 (+) True LOC110533840
TU1005877 other upstream 1327554 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 1377122 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1883160 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 2492134 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 2762469 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 525271 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 3482089 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 3482089 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 3482089 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 3847977 42078215 ~ 42153778 (+) False G890228

Expression Profile