RNA id: XM_021618379.2


Basic Information

Item Value
RNA id XM_021618379.2
length 2550
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110533839
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38280338 ~ 38286660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTTCTCTCCAGCATGTTATCAAGCCACGTGACATCATGGTCAAAGCATGACGTCTCATATCCGTCTGGACAGAGAAAATGGCGGATGTGGATGAGTTAAGTAAACCTATGTTTGCAGGTCTGTCAGATGTATCCATATCAGGAGACATCCCTGTTGAGGGGGAGATCAATGTGCCGGTTGGAACCCCCAGTCATGATGACGAATACTCCACACTGGATGAACCTGTCAAAGACACCATATTACGAGATCTGAAAGCAGTGGGGAAAAAGTTTGTTCATGTGATGTATCCTAAGAAGAGTTCAACGCTACTGAGAGACTGGGACTTGTGGGGCCCATTATTGCTCTGTGTGACACTGGCTCTGATGCTGCAGGGGGGTTCAGTTGACAGTAAGGAAGATGGAGGGCCCCAGTTTGCAGAGGTGTTTGTGATCATCTGGTTTGGATCTGTCATCATCACACTGAACTCAAAGCTGTTGGGAGGCACCATATCCTTTTTCCAGAGCCTGTGTGTGCTAGGCTACTGCATCATGCCTCTGACTGTGGCAATGGTTGTCTGTAGGCTGGTGCTGCTGGGTGGGTCTGGGATGGTCAGCTTCATCGTTCGACTAATTGTGGTCACAGCATCATTCAGTTGGTCCACGTTTGCCTCTACAGCTTTCTTAGCAGATAGCCAGCCTTCTAATCGCAAAGCTTTGGTGGTATATCCCGTCTTCCTCTTTTACTTCGTTATTGGATGGATGATTCTCACGTTCTCACCGTCTGCGTAACAGTGGACTTGTCTCTAAACTGAACTTAACACAATCCGTTTGGAATAGAAGGATACAAATCAAAACCATGTAATTTGTGAAGGATGAGGACCATGATGTGTTGGGGGTACTCTTGGTTTGAAACGTTGTGCATTTTCCTTTGGTGCCACAAGGAAAATAGTGAGATTTGACCAAAGTGCACCGtgctttgcctctctctctctttttgtttccATTATTGCTAAGCTCAGCTAAGAAATACAGTGGAGTACAATGCATACAAAAGAGTCAAAGTGAGGCTTTTCTGATATCCTTACAGGGACTATCTGCTTGATTAAACAGGCTCTCTGTGTCTCACATGAAGAGATTACTTCTAGTACACTAGCAGTAGGAAAGGGGACCATGAGATCTATATTCTATGTGACATGGTCCATTTACCTATATCACTGACTAATAGGTGATGCcagtgtgtatgtatactgtacacTGCCTTATGCCCCATTTTCAACATTTCTTAGGTTTCTGTTTTATTTAGATTATTTACAAGTAGTATTCTCATTTAAAAATGAAGATTTGATTTTCCAAGGATAGTAAGTGGCAGTGTTGCTAAATTTTCATATGAGCAACATTTAAAATTATGTACAGTAGGTGGCTGTAGTTAACATTTACTGGGGAAGGTTatgttattatatatttataaatgCCCTGTTCTCTTTCAGTAATTTAATATAATTCTATTTAAACAGAAATGTGAAAATAAACTGTAATTCTCCAAAATCTGAATAATTTGTATTTGGTtctttaatttttaatttttatatTTGGTTCTGTAATATGGTGCAAAATCATTTTTTCTGTTGTTCAGATGCCAGTCAAGATCTCAGTGTAGCATGAATCACAAGGTACACCTTAAGTACAGTCATCAAATGCATTGTACATGGGGGTAATCGCTCTGCCATTTACCACTTACAATTGACCATTGGTCCTTGTGGTTAGCTGTTacataaaatacctatccaggtgtGCTAAGATCGGGCATGTGTCAGGAaagcctgggcagaggaacaGGCTCATTTAAAGCCGAGTTTAGACTCCTAACTACTCAATATTacttgtagatcagtcagtcaccaTTTACCCATGATGCATCACGGTTTTTATGCTCTCTAACACGGCCACGGTCACATCTGGTATGCATCGTGATTTTTAAACATCTATGAGCAGGCCAAGGTTAGTAAGCAAAAGTAAGTTTATGTTGAAAAAGGGTGAATTTCCCCCTTAACTGACAAGACGCATCACACAGAGGGACTCCCGGCTTGAAGATATTGGGCTTTAGTGGTAAGTTTTAGTGGTAAGCCGGAAGTAGTTTACAAGTAAAGCCGAAAGAGGCACATATGCATCTGCTGTCGGACGACTTCTGCTCTTTCTAGGAAACGCGTCAGTGGCAGACCATGGCATTTGCCTTTGTTATTGCCGACGAGGTGGATGGTATTGAAATTCCACATCTACACAAAGCTGAACATGATCAGCATGGTCTAAGGAATGAATATCCTGATAAAGAAATTAGACACCAGTCCAAGCTCTAACATTCACAATACTTGTTTTGTATCTGTGATGGTTTTCTCAAAATATAACCAGAAATTTAGTGCATAGGCTACTAGAATGAGAGcatatgtgttattgcattatatgTGATATGCTCGTATTTTTTGTCATTACTTTATGTCCTTGAACCTTCCTCATTATTTGTGATTGTGCAACATGGAATTGTGACAGATGTGATTAAATATGGTCCACAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22943 YIPF6; protein YIPF6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007741 lncRNA upstream 10750 38267288 ~ 38269588 (+) True G885657
TU1007672 lncRNA upstream 40058 38238734 ~ 38240280 (+) True G885595
TU1007662 lncRNA upstream 162353 38117160 ~ 38117985 (+) True LOC110533835
TU1007471 lncRNA upstream 222313 38057747 ~ 38058025 (+) True G885419
TU1007432 lncRNA upstream 224651 38001713 ~ 38055687 (+) True G885381
TU1007752 lncRNA downstream 3569 38290229 ~ 38290562 (+) True G885668
TU1007753 lncRNA downstream 4066 38290726 ~ 38291023 (+) True G885669
TU1007755 lncRNA downstream 5900 38292560 ~ 38292793 (+) True G885671
TU1007759 lncRNA downstream 12229 38298889 ~ 38352818 (+) True G885673
TU1007792 lncRNA downstream 60499 38347159 ~ 38347517 (+) True G885706
XM_021617169.2 mRNA upstream 50100 38178704 ~ 38230238 (+) False ar-beta
XM_021617170.2 mRNA upstream 50100 38178707 ~ 38230238 (+) False ar-beta
NM_001124185.1 mRNA upstream 50100 38179756 ~ 38230238 (+) True ar-beta
XR_005053660.1 mRNA upstream 162351 38117154 ~ 38117987 (+) False LOC110533835
XM_036990217.1 mRNA upstream 217025 38059762 ~ 38063313 (+) True LOC110533834
XM_021618381.2 mRNA downstream 24161 38310821 ~ 38336289 (+) False LOC110533840
XM_036990218.1 mRNA downstream 24161 38310821 ~ 38336289 (+) False LOC110533840
XM_036990220.1 mRNA downstream 24161 38310821 ~ 38336289 (+) False LOC110533840
XM_036990219.1 mRNA downstream 42038 38328698 ~ 38336289 (+) True LOC110533840
XR_002475183.2 mRNA downstream 447483 38734143 ~ 38743257 (+) True LOC110534919
TU1005877 other upstream 1429185 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 1478753 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 1984791 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 2593765 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 2864100 35414975 ~ 35416238 (+) True G882624
TU1008492 other downstream 468849 38755509 ~ 38812139 (+) True LOC110533845
TU1012334 other downstream 3425667 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 3425667 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 3425667 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 3791555 42078215 ~ 42153778 (+) False G890228

Expression Profile