RNA id: XM_036989348.1


Basic Information

Item Value
RNA id XM_036989348.1
length 2273
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110533841
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38336407 ~ 38434401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTCGCCCGGCCCACACTGTCCGGTGTGCTGATGGAGGCTCGTCGGATCCGAGTCACCCTACAGTACTTGGTGGACTGGGAGGGCTACGGCCCTGAGAAGCGAGCGGAATACTCCACAGACAGCaacctctaccctgtctgtccaCTGGGCCAGTTCCCCTGTGGAAACCTGTCTGTGTGCCTGCCCCAGCTTTACCACTGCAATGGGGTCCAGGACTGTACTAACGGAGCTGATGAGGAAAACTGCGTACTGGACGTGTTTCCAGAGGTATGTTTCTGTGAGGGCAGGAGAATAAACTGTAACAAAAAGGGTCTACTCAGCATCCCAACTGTGTCTTCCAATATAACAGCTCTTGAGCTGAACAGCAACCAGATAACTGCTCTCCAACCAGACCAGTTCATCCGCTACAAACACCTTGAGAGACTACACCTGGAAGACAACAGGATCAAAAGAATCTCCAAGCAGGCATTCTCAGGACTCTACTCACTAAGAAGACTATTTCTCAGTCAGAATCGGATTACGTTGTTGAAGGCTGGCATTTTTCAAGACCTTTGGAACCTGGAGTGGCTGATTCTTGATGAAAATAGAATAGCATCTCTGAGACAGAAATCGTTTGAGGGGCTGAAATCGTTATTTTTCCTGTCTTTGCTGAACAATTCCCTAGAATCCTTCCCCAAGAAATCTGTCTGCCAGGAAATGCCTAGATTAAACTGGCTAGAACTGGAGGGGAACAAGATATCATCTTTGTGGGTTTCCAGCTTTCAAAACTGCACCACTCTGACAGTATTGGCTCTTCGAAAAAACAGAATACAAACTATTGAGGAGGGAATATTTTCCGGCATGCCAAACCTGATAGACTTGGACGTATCTTTAAACAAAATTGAGGAGTTCTCACCAACTCTATTTACAAATCTTCAAAACCTAAAACAGTTGAACATCTCAAATAACCCTCTGACTCATATCTATGATGATCAGTTTGACATGTTTGTCAATTTGCAATCTCTGAGTATAGAGGAGGTCGACATACCAAACATCAGTATTCAGATGTTTCGCTCTCTTCGGAACTTGGCCCATATTTATTTTAAGAAATTTGAATACTGTGGCTACTCTCCTAATGTGCGAAGTTGCAAGCCAAACACGGACGGGATTTCAACATTTGAGAATCTTCTTGCGAACATCATCCTTCGTGTTTTTGTGTGGGTGGTGGCCTTCATCATCTGCTTTGGCAACATTTTTGTGATATGCCTGCGGTCTTGCATTGCATCCGAAAACCAGCACCACACCATGGCCATCATATCACTGTGCTGTGCTGACTGCTTGATGGGAGTATACCTGTTCTTCATTGGTGCATTCGACATCAAATACTGTGGAGAGTACAACAGACACGCCCAGCTGTGGATGGAGAGCATGCAGTGCCAGTTGATTGGCTCTCTGGCCATGCTGTCCACTGAGGTGTCAGTCATGCTTTTGACCTACATGACTATGGAGAAGTACCTGTGCATTGTGTTCCCCTTCCACAACTACAGAGCCGGACGGAAACAGACACTCTGCTACCTCATCTTCATCTGGGTCCTGGGTTTCATAATCGCCGTCATTCCCCTCTGGGACAAGCAGACGTTTGGGAATTACTACGGCAGGAATGGAGTGTGTTTTCCACTTCACTCAGACGAGATGGAGAAACCAGGTGCCCGATGCTACTCCACTGGAATATTTCTGGGGTTGAATCTCTTTGCATTCGTCATGATCGTCTTCTCCTACACCAGCATGTTTTACTCTGTACAGAAAACTGCTAAGACAGCAAGACAGTCCGTCTACAACAAGGAGGTCTCTATAGCCAAGAGGTTTTTCTTCATTGTTTTCACAGATGCCATGTGTTGGACACCTATATTCCTCCTAAAGATCCTCTCTCTTTTACAAGTGGAAATAGCAGGAACAATCGTTTTATGGGTGGTGATCTTCATCCTGCCCATCAATAGTGCCCTAAACCCCATCCTGTACACCATCACCACCAGCTCCTTCCAGGAGAGACTGAAACTCTGCCTGAAGGCCAAGTGCAAACAGACTGGGCTCAGGGAAACTTCCCAAAAAGTATCTGAAGTCTACCAGAACCCCAGCCCTCCTCCTTAACAAAAAGGAACCTCTCAGTCAGGGAGCTAGCCAACCCTCCTGGGTGTACAGGCTTTTATTCCAGTCCTTCTGGAACACACCTGATTCAGATCATCAAGATCTTGCAGATCATCTGATTAATAGGATCAGTGTGTTTGAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1007933 lncRNA downstream 43375 38292792 ~ 38293032 (-) True G885840
TU1007919 lncRNA downstream 100633 38235418 ~ 38235774 (-) True G885827
TU1007848 lncRNA downstream 161050 38117202 ~ 38175357 (-) True G885761
TU1007577 lncRNA downstream 272153 38062852 ~ 38064254 (-) True G885509
TU1007649 lncRNA downstream 275942 38060184 ~ 38060465 (-) True G885572
TU1008054 lncRNA upstream 3035 38437436 ~ 38437731 (-) True G885950
TU1008108 lncRNA upstream 34284 38468685 ~ 38469374 (-) True G885999
TU1008145 lncRNA upstream 55705 38490106 ~ 38490384 (-) True G886035
TU1008159 lncRNA upstream 62700 38497101 ~ 38497311 (-) True G886049
TU1008164 lncRNA upstream 67936 38502337 ~ 38502642 (-) True G886054
XM_021618378.2 mRNA downstream 56401 38245016 ~ 38280006 (-) True LOC110533838
XM_021618376.2 mRNA downstream 200676 38127426 ~ 38135731 (-) False LOC110533836
XM_021618377.2 mRNA downstream 200676 38127426 ~ 38135731 (-) True LOC110533836
XM_021618373.2 mRNA downstream 223591 38065806 ~ 38112816 (-) True arhgap20b
XM_021618374.2 mRNA downstream 223592 38065806 ~ 38112815 (-) False arhgap20b
XM_021618384.2 mRNA upstream 110651 38545052 ~ 38617748 (-) True LOC110533842
XM_021618398.2 mRNA upstream 494068 38928469 ~ 38945302 (-) False LOC110533851
XM_021618397.2 mRNA upstream 494068 38928469 ~ 38945732 (-) False LOC110533851
XM_036990225.1 mRNA upstream 494068 38928469 ~ 38945732 (-) True LOC110533851
XM_021618404.2 mRNA upstream 518207 38952608 ~ 38971312 (-) False LOC110533854
TU1007856 other downstream 95848 38238950 ~ 38240559 (-) True G885767
TU1007025 other downstream 632621 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 1017543 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 1671050 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 1943880 36391103 ~ 36392527 (-) True G883754
TU1009059 other upstream 749297 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 782912 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 1420565 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 2062313 40496714 ~ 40547367 (-) True LOC110533878
TU1012917 other upstream 3548300 41982701 ~ 41984417 (-) True G890360

Expression Profile