RNA id: XM_021618386.2


Basic Information

Item Value
RNA id XM_021618386.2
length 4094
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110533845
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 38755443 ~ 38815017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTTTACCTTGTAATGGCTGTTTTATTCAGCAGGGAGCTATGGGCGGAACGGTTAAAGCTCCTTCGTCTTCAGGCTACAGAAgacacatttacacacaataaATGATTTCAGGTGACTAATTACAGAGACAAAGTACCATATGCCTACACAATACCTCTTATGAATGTTTTCCATTTGAAACAATTTATTTGCTCATTCATGaacaggcctactgtatgtgaataTTCATACTGAATTCATGAATAGCCTatgaatataataatacatgtgGTTCATGGTTGTATAATATCTACCTATAGCAGATGTTTGTTTCCTTGTGCTTCTATCATGTTAATAGTGTTTTGTTTTTCATGCCACTTCTCAGCTCTGGTATCTTGCCACCTGTGTGTCGAGCTGTGATGATGTCACCCCTCTGTGCCCTCTCTGGGTTGTCTGGCAGAGCCTTTGATGTTCCACTACCTCACAGCAGAGGGATGTCTGTGGTTAGGGGTATTTATGAGTCATATTGGACCACAGTCAGACTCTTTGCCCTGGTTGGTGTTGATAGAGCCATGATGCCTTAGGTGTTTCCCAAGTCTCTAATGAGAGCTCGGGCAACCAGGATTTCCTAAGGCTTTGAAACTACTCTGTTTCAGGATGGCACATGTGGAGAGAGGTGTCACTGAGCTGTAGCCTATTGACCCACAGCTGTAGGTTTAAGAACAGCCCTGGTGATAAGAGACAGTGCTTCCAGCAAACAGAAGATGTATGCTACATAGAGCAAAGTCAGTCTACAAAGCCTGGTTATGCTCAGAATACTTCAACGCCACCCAGAGCCAGTGTCAACACAGGATTCCCTGCAAGCAATATTGTCTGGAGGTCCAGACCATGTGCCCCTTTGTGTTACCAGACAATGACGACTTGGTCTACGGAGGACTATCCAGTTTCAtctgtacagGGCTACTAGAAAACCATTTAACCAATGCAGACCCAGAGTGTTGTGATGTCAGATGGAGTGGCTGCGACCCCTCTGTGGGGGCGGCGTGCGCCCTGACACAGCTTCCAGGGTCGTCGTCATGGCAGCGGCGCAGCTCCCCGCCCGTGTCAGCTGCATCGCGGCTGTGCAGCAGCAGACTAAGACTGTGTGTTCTGGTCCTCATCCTGCTGCACACTGTCGTCTCCTTCTCCACTGTCCAGAGCAGTGGCACTGTGGGCCTGGAGGCCATGGTACCCCTGCCCCTGGAGGAGAGCTCTGCCCGAGAGGAGTGACTGAATATGAACAAGAGTTTCTACTGTTCCCTGCCTCCAGTCTACAGAGACCCCTTCCTTCACAGTACCTGAGGAGTGAGGCGTTtataaccctctctctccatccagtccCCTCCACAGGACATCAGCAATGAGGAGGTTATACACCGTTCCAGGGCAGGCTACAGGTCGGTATACCTCCTCACCCTCCACCACACCGGAGGAGTGGCGAAGCACGGGCCCTCCCCTACCTCGACACAGAGAGGTATGGAGGTGGATGAGGTTTCGAAACTGAGAACCAGACATGTCTCACATGTAAGGAGGACATGAAAGGGCATAGGGAAAGAGAGGCGGGTCTCCTATCATCCCAGGGTCCAGAGGAAGCGTCGATTTTGTAACTGAAAGAGGTACTGTATGCTGTTTCTGAGAAGGTTTTGGGTACAAATGGCCTTTTTCAAGTTTTATCACTACTCTATTTAATGAGTTGAGTGATGTTTTTGGGGATTTACGTATGACATTGGGTGTTGAGTTTGTGAACTGCACAGTGGGGAAAAGTATGAGTTGCAGGCTCGTATGCTATTTTTTTtatctggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatacagtGAAGAAGTCAGCAATATAATGTAAATGACCCAACACAAATCAGATGACCATTACATCTTCCAAGCTAACAGAATACGCACAACAATACTTTGTTTGGCTCAGAGTAAATATTATTCTTATTCTCAGTACCACTACCCTCATTATCATACACCAAGTAGAATCAGTTCATGCAAGTATTGGATTACAGATCCTAATCAAAGGTAAACCATGTTGTTTTTGATAGATGTCAGAAGTACACTACTAATGCTGTGGAGGAACATGTGTTTATGCAAAGCTGATTGAAACGAGTTGAAACCCCCACTGGGTCTCTAATCGCTTACAGAAGGCACATGATTGTGCAATGGAAGACTGTCTGTATTATAACTACACCAATCATTTCTTACTCATAAAACAGACAATTTACCACGTATTACACATAACAAAGACCCAGAGTGATAATTGGAGCAGAATGTTATCATGGCTGAATGTTTAAGAAATGTTCAAGATGTGAATGCATCGCGTCATCAAAAAACTGAGGCATGTGTCTATGCCCTCAATGTCTTCTTGTGTGTTCATTACATTCATGGTGAAATACAGTGATTACAGTATTTGGAATGAACCAAAACTTTATAAATATACTTCTAAATATTAGAGATATAGAAAAAGATCCACCTTGATTTATTCATAGGCAATCTGTTGGGAAGCGGTTTTGTTATTTGTAAAGACAAGCTAGAGCATGATTATATAAATGGTTCTCATATGTTTCTGATTTCTTGGATTGAATACTTCTGACCTCTCTTTTCCTGGCATAATTTGTGTATTATTCTTACAAATAGTTGGTAAAAATTGGGCTTGTATTTGggaagctgaaataaaataactGTCTTCCAATGTGACAAATTGATTCACAAATAGGAATTGTGAATAGTTTTTTATCTTACAAAGTATTCCTTGGGTTCACCTCCCAAACAGATACTATATGTGACCTTGGTCTACCAGAATACAGGCATATTGTTTATGTCCTAACAAAACTATCTTAACTATTTTACTATTGAAAAACTATATCATAGCACAGGTTTTTACAGAGtattgtatacagtatgtatatgaaTTTAACTTGGATTTGAATATCTGAGCATTTTAGTAATATAAACAAATCAGAGATCTATGAGATGCATGAGATTCAGATTATTTATTtatctaaaataaaatatattatactattggtggttcgagccctgatggctgattggttgaaagccgtggtatatcagactgtataccacaatatgcccccaaaaatatttgtactgttctaattatgttggtaaccagtttataatagcaataaggcaactCTGGCgtttgtggtacatggccaatataccatggctatatccaggccctaagaacagcccttagccaatatatattggctatataccacaccgcctcgtgccttattgcttaattatatcaCTGTAGCCTTTAATGCCCACAATGAATTAGTAAGAACTAATCTCATGTCAGTCTGATAAACTGCTCGTTTCTTTTGCTAAAAGTGCAATATTTTGTTTTTGACAGCCTGTGTTGTTTCATTTAATATCTAACGGACATTGTCAGCATGCTGATTATAAACTGGTTTAAGATGCCAAACACTCTAAAAGAGACAACAATGTTGATAACTGCAACTTGGGATTGGAAATCTTGCCTGCCTTATATGACTAACGTGTGTAACATTGTATGGTCTCTCCATTTCCAAAAAGGTCACTTGTACCCTTCTCTCTCCTATGTCAGTCATCGCTGTTGCTTATCCGTTAGAATGTAAAGGATTGGTACCTCAATCAGAGAAGGGAAAAGGGGTATAAATCTACACTGGTGTCCTAAGCCTGTATGCTGTGAGGAGACTACTTCTTATGCCATTTTATACACTGTGCTTTAATGTTAAGAACTTTTTGCACTAGTtctaataacttttttttttcctGAGATTTGTTTTAAAACTGTGCTTACTAATTCCGTTCTAAAACAAATATTATCCCATATCTGTGTTTCTAGTTGTATATGTAatctgttttctgtttctattgtATTTTGGGCGGAGCCGTGCCTGCTCACTGTTAAAGCTCATTAAAGTAATACAATCGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008496 lncRNA upstream 38209 38718287 ~ 38718497 (+) True G886378
TU1008482 lncRNA upstream 45612 38710886 ~ 38711094 (+) True G886365
TU1008462 lncRNA upstream 56040 38700432 ~ 38700666 (+) True G886345
TU1008458 lncRNA upstream 61842 38694349 ~ 38694864 (+) True G886341
TU1008454 lncRNA upstream 65131 38691298 ~ 38691575 (+) True G886337
TU1008494 lncRNA downstream 74386 38889403 ~ 38890367 (+) True LOC110533846
TU1008601 lncRNA downstream 98498 38913515 ~ 38973414 (+) True G886474
TU1008650 lncRNA downstream 192508 39007525 ~ 39009684 (+) True G886521
TU1008689 lncRNA downstream 209310 39024327 ~ 39024713 (+) False G886551
TU1008690 lncRNA downstream 209310 39024327 ~ 39028030 (+) True G886551
XR_002475183.2 mRNA upstream 13449 38734143 ~ 38743257 (+) True LOC110534919
XM_021618381.2 mRNA upstream 420417 38310821 ~ 38336289 (+) False LOC110533840
XM_021618387.2 mRNA downstream 14601 38829618 ~ 38891890 (+) False LOC110533846
XM_021618388.2 mRNA downstream 14601 38829618 ~ 38891890 (+) False LOC110533846
XM_021618389.2 mRNA downstream 14601 38829618 ~ 38891890 (+) False LOC110533846
XM_036990221.1 mRNA downstream 14601 38829618 ~ 38891890 (+) False LOC110533846
XM_036990222.1 mRNA downstream 77954 38892971 ~ 38898218 (+) True LOC110533847
TU1005877 other upstream 1905553 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 1955121 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 2461159 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 3070133 35682655 ~ 35686573 (+) True LOC110533748
TU1004303 other upstream 3340468 35414975 ~ 35416238 (+) True G882624
TU1012334 other downstream 2897310 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 2897310 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 2897310 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 3263198 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 4167665 42982682 ~ 43109676 (+) True G891133

Expression Profile