Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_036990222.1 |
| length | 3919 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 5 |
| gene id | LOC110533847 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 38892971 ~ 38898218 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0030100 | regulation of endocytosis | biological_process |
| GO:0060898 | eye field cell fate commitment involved in camera-type eye formation | biological_process |
| GO:0090037 | positive regulation of protein kinase C signaling | biological_process |
| GO:0035567 | non-canonical Wnt signaling pathway | biological_process |
| GO:0031016 | pancreas development | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0051496 | positive regulation of stress fiber assembly | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0001839 | neural plate morphogenesis | biological_process |
| GO:0045860 | positive regulation of protein kinase activity | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0030308 | negative regulation of cell growth | biological_process |
| GO:0060021 | roof of mouth development | biological_process |
| GO:0007417 | central nervous system development | biological_process |
| GO:0060031 | mediolateral intercalation | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0030336 | negative regulation of cell migration | biological_process |
| GO:0034394 | protein localization to cell surface | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0061101 | neuroendocrine cell differentiation | biological_process |
| GO:0001702 | gastrulation with mouth forming second | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005109 | frizzled binding | molecular_function |
| GO:0030295 | protein kinase activator activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1008494 | lncRNA | upstream | 2604 | 38889403 ~ 38890367 (+) | True | LOC110533846 |
| TU1008496 | lncRNA | upstream | 174474 | 38718287 ~ 38718497 (+) | True | G886378 |
| TU1008482 | lncRNA | upstream | 181877 | 38710886 ~ 38711094 (+) | True | G886365 |
| TU1008462 | lncRNA | upstream | 192305 | 38700432 ~ 38700666 (+) | True | G886345 |
| TU1008458 | lncRNA | upstream | 198107 | 38694349 ~ 38694864 (+) | True | G886341 |
| TU1008601 | lncRNA | downstream | 15297 | 38913515 ~ 38973414 (+) | True | G886474 |
| TU1008650 | lncRNA | downstream | 109307 | 39007525 ~ 39009684 (+) | True | G886521 |
| TU1008689 | lncRNA | downstream | 126109 | 39024327 ~ 39024713 (+) | False | G886551 |
| TU1008690 | lncRNA | downstream | 126109 | 39024327 ~ 39028030 (+) | True | G886551 |
| TU1008743 | lncRNA | downstream | 195158 | 39093376 ~ 39098544 (+) | True | G886602 |
| XM_021618387.2 | mRNA | upstream | 1081 | 38829618 ~ 38891890 (+) | False | LOC110533846 |
| XM_021618388.2 | mRNA | upstream | 1081 | 38829618 ~ 38891890 (+) | False | LOC110533846 |
| XM_021618389.2 | mRNA | upstream | 1081 | 38829618 ~ 38891890 (+) | False | LOC110533846 |
| XM_036990221.1 | mRNA | upstream | 1081 | 38829618 ~ 38891890 (+) | False | LOC110533846 |
| XM_021618385.2 | mRNA | upstream | 77954 | 38755443 ~ 38815017 (+) | False | LOC110533845 |
| XM_021618391.2 | mRNA | downstream | 4465 | 38902683 ~ 38908772 (+) | False | LOC110533848 |
| XM_036990223.1 | mRNA | downstream | 4465 | 38902683 ~ 38908772 (+) | True | LOC110533848 |
| XM_021618395.2 | mRNA | downstream | 17675 | 38915893 ~ 38920113 (+) | False | LOC110533849 |
| XM_021618392.2 | mRNA | downstream | 19510 | 38917728 ~ 38920113 (+) | False | LOC110533849 |
| XM_021618393.2 | mRNA | downstream | 19514 | 38917732 ~ 38920113 (+) | False | LOC110533849 |
| TU1008492 | other | upstream | 80832 | 38755509 ~ 38812139 (+) | True | LOC110533845 |
| TU1005877 | other | upstream | 2041818 | 36849646 ~ 36851153 (+) | True | G883966 |
| TU1005835 | other | upstream | 2091386 | 36799385 ~ 36801585 (+) | True | LOC110533788 |
| TU1005301 | other | upstream | 2597424 | 36293314 ~ 36295547 (+) | False | G883473 |
| TU1004434 | other | upstream | 3206398 | 35682655 ~ 35686573 (+) | True | LOC110533748 |
| TU1012334 | other | downstream | 2814109 | 41712327 ~ 41717292 (+) | False | G889906 |
| TU1012335 | other | downstream | 2814109 | 41712327 ~ 41717292 (+) | False | G889906 |
| TU1012336 | other | downstream | 2814109 | 41712327 ~ 41717292 (+) | True | G889906 |
| TU1012699 | other | downstream | 3179997 | 42078215 ~ 42153778 (+) | False | G890228 |
| TU1013804 | other | downstream | 4084464 | 42982682 ~ 43109676 (+) | True | G891133 |
