RNA id: XM_021618409.2


Basic Information

Item Value
RNA id XM_021618409.2
length 2173
RNA type mRNA
GC content 0.47
exon number 14
gene id radx
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39006334 ~ 39016120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAAAGATGACCCTCCTGTGTGATCTAGAGTCGTCACTCGGATGCATGTTTCGACCTCTCCCCCTGCTAGTGAGGGTGATTCATAAATCCAGACTTCGGTATTATGGAAAACCTGACCTCAATATTTATTACCCGTACCAGGCCTACTTTGAGGTTGCAGACCAGAGTGGCACCATGTCCCTTGTCCTGTGGAATGAGCTGTGCCCAGAATGGTACCAGAGACTGAATGTTGGAACTGTGCTCTATCTCCAAAACTACACCCTCAAGCAGAGCTATCAGAACAGGTCACGACCTCACATAGACAACCACAGAATGAAGAGCTTTCACTCAAAATTTGTCTGAATCCACGGAATCCCACTGCAGTCCTTACTGTGGTTCCAGCCAAGAGTGTGCCACCTCAATGGGGCTTGCCTGAGGTTTCCTACCAGTTCGCCATTAGATCAGAACTGGACAGCATGGCCAGCAATTCTGCATGTGATGTCATTGGCTTGGTAACTTTTGTGAGTCGGGTGGAGAGAATAAAGAGTAAGGGGAACACAGGCCCAGAAAAATACTGGACTTACCGCTGGGTCCATGCAGTGGATGGAACATCCAATATTCCTTTCATTTTGGAGATTTTTGCTTCTTCACAACCAGAAATATTCAATGGGCTATACCCAATGACATACCTGGTCTGCACTCAGATGAGGAAGTGTCAAGAGCAAGACTCACTGCCTTACCTCACCAGCAGCTGTGAGACACAGATATTCACTACAGGGTATCATAAGGGCCAGCCCTACGTGTCAGACCCCAGGGTTAAGAGCTTCATCCAATGGACCAAGACTCTGAAGGACAGTGTCATGCTGAAGAAGACTGCTGTTGGTGGCCATTACTGCTACCCTCACGCCCCTATTATCTTCACACAGTCTGTGGCAGATGGCTCAGCTCAAGTTCCTCTAGTTGCTGCAAATGACTTGAAGAGTGAGATGGAGGGTCTGCATTATCGTGAGCACAAGCGTCTGGCAATCCAAGGACAGATCATGGCTGTGTACTATGTGACATTGCCAGAGGAGACTCTGTCAGACCAGCAGATGGTTCAGTCTGTTGTGGCTGAATCTGACCCACCCAGTGATCAGAGGATGGTAGAAGTGACTCAGACGCTGATAAACAGGGAAACAGCGCCCTCTAGTGTGCAGAGCTCACCCAGCAGACGGAAAAGAAAACAAGCCAAGAGAGTGATGAAGCGATGCTACATTACTCGTGCCAGGATGCAAGAGAAAAGAGAGGCTGGCCATGGCTTAACAGAAGAGGAGCGTGATTCTGAAACAGAGGAAGTTAGTTCACTAGAAAAAATAACTGACCAAACTAGAGCCAGTGAACAACTAGGTCCACCAGATATTCCACAGAGTGAAGGCGCTACTGGAGAGAGAGCAGTTGCAGACTGTGATAGGACATCGTGGGAAAGCAGCTCGTGGCCAAAGCAGAGACAAGAAGTGTTAGAATATTTACATCCTGGTGGTGTGTACTCAGAGAGCCTTTCTCAGAGATTCAGATTTGACGACAAGACCCTTCTGCTGCAGCAAAGTAACCTACATGCTGCTAGGTGGACTCCAGAGCAAACCACAGACACCCTCTCACCAGTAACCTGCAAAGGATACTATAAAATCACAATATTAGgtaTAAACCAGCAGATGGCCATCGATGCTGCCTTTGTTCCCGTGATGTCATCTGGGGACCCCAGGTCCGTAGGTCTAACGCAAGACCCCCATGACAACACACTTCTGTCCTGCCTGTCTGCAGGCTTCATCTGCCCTCTCGCAGACCCCCTGAGCCAGAGTGAGGTTGCTCTCCCTGAACCAGAGGAGATTTTAGCAACTGCTGAGGAGCTGAAAGACACCCATCTTGTGTGTATCCTTGACCTCTGTCATCTGGGAGGAGAGAACGTGGAGGTTATCATCACCAAGGTGTATAGAATGACTGATATTGCTTTGGTATAGATATTGGACCACAGTATGTGTTGTCTTGTCTGACAAATCTGAATTGAATATGTCCTTTTAACATGATTAGCCAGACACATTTTATTGTTAAATACTGGAAATATTTTTgtagatatttttttaaatgggggTTTGAGTattttgggagaaaaaaaaacacaatttcaacaacaaataaaataatcACATTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1008954 lncRNA downstream 86399 38917578 ~ 38919935 (-) True G886799
TU1008895 lncRNA downstream 97572 38906460 ~ 38908762 (-) True G886744
TU1008917 lncRNA downstream 125565 38858769 ~ 38880769 (-) True G886764
TU1008879 lncRNA downstream 191346 38811888 ~ 38814988 (-) True G886729
TU1008483 lncRNA downstream 294694 38711401 ~ 38711640 (-) True G886366
TU1009065 lncRNA upstream 114213 39129115 ~ 39129417 (-) True G886892
TU1009068 lncRNA upstream 122832 39137734 ~ 39138012 (-) True G886895
TU1009104 lncRNA upstream 172222 39187124 ~ 39187343 (-) True G886929
TU1009060 lncRNA upstream 179193 39194095 ~ 39194480 (-) True G886887
TU1009111 lncRNA upstream 179729 39194631 ~ 39194846 (-) True G886936
XM_036990226.1 mRNA downstream 5603 38984255 ~ 39000731 (-) True LOC110533855
XM_021618403.2 mRNA downstream 34272 38952608 ~ 38972062 (-) True LOC110533854
XM_021618401.2 mRNA downstream 35012 38952608 ~ 38971322 (-) False LOC110533854
XM_021618402.2 mRNA downstream 35013 38952608 ~ 38971321 (-) False LOC110533854
XM_021618404.2 mRNA downstream 35022 38952608 ~ 38971312 (-) False LOC110533854
XM_021618411.2 mRNA upstream 9341 39024243 ~ 39060428 (-) False LOC110533857
XM_021618410.2 mRNA upstream 9341 39024243 ~ 39096076 (-) False LOC110533857
XM_021618412.2 mRNA upstream 9341 39024243 ~ 39096076 (-) False LOC110533857
XM_021618413.2 mRNA upstream 9341 39024243 ~ 39096076 (-) False LOC110533857
XM_021618414.2 mRNA upstream 15808 39030710 ~ 39096076 (-) True LOC110533857
TU1007856 other downstream 765775 38238950 ~ 38240559 (-) True G885767
TU1007025 other downstream 1302548 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 1687470 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 2340977 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 2613807 36391103 ~ 36392527 (-) True G883754
TU1009059 other upstream 168796 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 202411 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 840064 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 1481812 40496714 ~ 40547367 (-) True LOC110533878
TU1012917 other upstream 2967799 41982701 ~ 41984417 (-) True G890360

Expression Profile