RNA id: XM_021618411.2


Basic Information

Item Value
RNA id XM_021618411.2
length 6596
RNA type mRNA
GC content 0.42
exon number 21
gene id LOC110533857
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39024243 ~ 39096076 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTGTTTACAAGGGACTGTCAACGGAGGATGTTGAGTGGTAGAGGAAAACAGACCGAGCATAGACCTGAAAATGATTACTCCTGGAATCTATGTTTCCGAATAGGGATGTTACTCAAATTGTAGTTTGAATAATACTTAGGCAGCGTCTGTACACACTATGATCTGTTTGCGATGTGCTTGTGGTGAGTCAAGCTTAGGATCGTTGGCTCAGTGATTTACACAGTAGGTTGTTGGAAAAGGAGTACCTTCAAAAGTAAAGTATGGATCTAAAGTCCAGTTTTCAAGGTTTTGGTGTTTCTGTGGTGGACTCCAGGAGGAggtgggcagcagcagcaggtgaTCATTAGCTTTTTCCTGGGGCGCAGATGGGATACATCAGACTTCAGATAGGGCCtggctgggagagggagtgagaatggACAACCTTTCCGACTTTGGGTCCCTATGTCCGTCCAGCAGGAGGGAATGGGACACCAGCAGCTGTGTGGACGATTTGATGGATGAAGATGATAAAGACAGGGCAAAAAGGGCATCTCGGAACAAATCAGAAAAGAAAAGAAGAGACCAATTCAATGTGCTCATCAAGGAGCTATGCACCATGCTGCAGGGCCAAGGCCATCCACGCAAGATGGACAAGTCTACCATACTGCAGAGAACTATCGACTTCCTGCAGAAACAGAAAGAAATCACAGCACAGACAGAGTCATGTGAGATCCGGCAGGACTGGAAGCCTTCGTTCCTCAGTAATGAGGAGTTCACCCAGTTGATGCTGGAGGCTTTAGACGGTTTCCTCATAGCACTAACTACAGATGGAAACATTATATATGTGTCCGACAGTGTGTCTTCACTCATTGGCCATTTACCGTCAGATATGGTGGACCAAAATATCTTGAACTTCCTCCATGAGCGTGAGCATGGGGAGGTCTATAAGCTGCTATCATCCCACATGCTGATGACTGACCCCATCTCTGCTGACATCCTGGACAGTAAGACACACATTGAGTTCTGCTGTCATTTAGCCAGAGGAAACAGCCACCCAAAAGAACCGCCTACATATGAGTATGTTAAATTTGTCGGAGATTTGAAGTTTCATAACAATGTGCCTACATCTTCTTGTAACGGGTTTGATTTGACATTACCAAGAACCCTGCCGTCATCGTTGGAAGAGCAGGTCTGCCTTGTTGCCACTGTACGATTAGTCACTCCGCAATTTTTAAAGGATTTGTGTAATGTGGAAGGTCCCTGTGATGAATTCACATCCAGACACAGCCTTGAATGGAAGTTCCTGTTCTTAGATCACAGAGCTTCACCAATCATTGGCTACTTGCCCTTTGAGGTTCTTGGGACTTCTGGCTACGATTACTATCATGTGGATGACTTGGAGCTTATAGCGCGGTGTCATAAGCAATTAATGCAGTTTGGGAAGGGTAAATCCTGCTACTATCGGTTTCTAAGCAAGGGTCAGCAGTGGATCTGGCTCCAGACACACTACTACATTACATACCACCAGTGGAACTCCAAGCCAGAGTTCATAGTGTGCACTCACACAGTCGTCAGTTATGCGGAGGTGCGagcggagaagaggagagagtttgGCTTGGAGGAGACGTCCCCTGACATGGCCACTTCGTCATCCATGAAGGCTCAGGAGGTGTACCTGGACATCTGTCCCAATCTGGACCCCTCCGGACTGGACAGGATGAGCGGGGCACGCTCAGTGTCCTCCCACAGCTCCCGGAAGTCCTCCCACACGGCCCTGTCCGACACGGCATCAGCCAACTCATCTTTGCGGTACACAGATGCTTGCACACCATCACGGCAGTCTGCATCCATCGCTGGGACAGAGAAGAATTTGTCCAGACTCGCACCCAGTAGTGCAAAGtcgcagcaacaacaacagaagccacagcagcagcaacagtccATGTACCAGCAGCAGCCTCCTGAGCCTCAGCTAGGTGTCATGCACCAGCTCAAGGAGCAGCTGGAGGAGAGGACACGCATCCTGCAGATGGACATCAAGACTCAGCAACAGGAGCTGCATGACATCAAGGAGAAGCTGCAGCTGGCTAACCTCCAGatgttgttacagCAGCCGGTCCACAGTGACTTTGGACAGgtccaacagcagcagcaacaggctCAGCATCAGGGTCCAGGGAGACcagcccagcagcagcagcaggcccagTCTGGGGTGATCAGGCAGGCTTCGAGCCACTCCAAACAGCCTCTTCATGGAGCCCACGGCTcgtcccctcactctctcctcacaGAGCACAGCACACCCTCCCCTCAGGTGCAGCAGAGGTTGATAAGGAGTGCAGGCGGGCAGATGCAGGCAGTCAGTCTCCCGGTGCAGACCCATGCCAACTTGACCATGCCCTTCTACAGCAACCCCATGATGTTCTCTCAGCAGACAACCACACAGGCACTGCAGGACGTAAACCAAAGACACTCAGACTCGGAGTTTAGCCAAGAGAGACAGCTACGCATGCTGCTCAACCAGCCAGTGCAGACACTCGTACCTGATAGCCGTGTTAGCTCCCAGGCTTCCCAGTGCAACACAGCCATCCAGCAAACCAAATACACCCTGGAGCAGCAGATGATGACCCCGTCGTTTCCCATGCAGCAGGTGAACTGCAACGCTGTCCTGGTCCCCTCTCCCGTCTTCACGTCCTCTATCATGATCCCTCACAACAGCTTTATCACGCACCAGGCCCAGCCCACCTACCACGCTCAGCAGCAGGCCTGCCAGCACTCTCTGCAGCTGCAGCAGCCCCAGCAGTTCTTTCAGATGCAGCCCCAAGGACTCTTACACAGTGGAACCACTCAGGCTTTTTTCCACACTACTAATGTCCCACAGCAAGGTACTGTCAGTTATATTCAACAACAAccgcagcaacaacaacaaccgcaacaacagcagcaacaacagcagcaacaacagcagcaacaacagcagcaacagcggcAACACCACCATTCCCAAAACCAGCCTGGCAGCCTTTCAGACTTCCGAAATATGCTCACTCAGTAGCACCGAAGACACAAACAGTGGTGAGATATTTTCTGAAACTTATTGTTACAGGTTTGGTGGCAGAATTCTATGGGATGCATAGAAGACACAGAGAGGCATATTTGGTCCCATGCTGTGCTGTGTTCTTCACTGTTTAAGAAGCCATTGTGGCTTTTTTTACACAGCAAAAACAAAAGGTGAAAATGCTAATATTCGCTGCAGCAACATCTCTGTCCCACTCCACTGTGCTACTGGAGGACATGCTTACTCGTCATATTTCATCATGACACTGCTGGATGGAAAAAAAACGATCAAAGTAATCAACAGGAAAACGGTGCTGCTGTGTGTTTTCGTGCAGATGTGTTTTCAACAAAAAGAGAGGTTGTTAGGTGAGCCTTGTTGTGCACTGACTGCACTGTGGTCATACCATCTGTCCTGTTGTTTCCAGAGAGTAAACACCTGCAGTGAGCATTTACTCCTTCAAAGTTGCATCTTCATTTCACATGAAAAACACTTGTCTGTAGGTTATGGTTTTGctgtgcatacatacatacatttgtTTTGACATAGGAAGACTATTAGGAAACAGTAGTTTCAAGGAAACATAAAGGAAGGGGTTCATTTTGATGTTGGACGTGTCGTCTTTTCATCAAACATTCAGTCAGCCACTCCCAGACATAGTTGATATCATTATTAAACACTGAAGTATATTCACCACTCAACACTATTAATCCATGTTtggggaaaaaatattttgcatgacTGACACAGCAACAAATGTCCTCATACAATTACTATTATTTTCATTATAGAATCAAATATTTAGACATGATTTTTTCTAAAAGCGAACAATAGTACCAATTAGTTATGGCAACATTTGTATtcaataattcataaaaatcaagCTTCATATTCTTTATCCACACCTTAATGGAAAGAGCAAACCTTATTAGTAGACTACCATagcatgtttgtttatttatcaTACATTTCTAAACAAATTTAAGCTGTTCTACTGGGTGTGTTTTTAATCAGGCATTGAAAGATAAGTCAATAAGGTCTTAATGCATTAACAGCTACTAACAGCACAGTAACAGTAGTTTGTTGCCCAAATCACCTAAGAACTCATTGTTTTGTATCAAGTGTAACAGATGCTGCAATGATTAGGAAGACATCACTAATATATTGTAGTTGTCTTACATTGATTATGTATACTTTCATAACGTAATTCTTTTCTCAGGTTATTTGTGGAAACAAATATTCTCAGTATTACATTAACAATTTGTACTTTTCATAATTTGTTGGTTACAGTTTAATTGTCTATATTTGGTAATCTTTGCAATTCAGCAGAATGTTGTTGATTTTTGGACTATAGAGACTATGTGTATTTATCCATGAATGAGTAATTATGTCCATACACTGGTGATTTTAGGAATACTGTGTATGAAGAAAATACTAACCAGAGACAAATGGCCTGCTAATGTAAATTACAATCAAACTGACCACTTAAAATAATACTACGTATTTCCTAtttacttttttttcttcaagtTCCATACGTTTTCCCCAAATAACTACAACAGTAGGTATCTGATTTGAGTTGCCCTACCCCCATTAGATATTGTAATATTTGAATGGGAAAGTCCTACTGTGAAACACTTATATCCTGTCAAACAATGAGAGAAATGTATGCCTCAATTTCCCTTTACATTCACTAGCCATAACAAAATGGAACAACATATTGGAATTCTAATCTAAACTAAATGTGCCATTTCACATGAAGTGAAGGTTGAAATGCATTGTGGAGTGATAAGAATCTTAAATTGTACAACGTTTATGACAATCCtaccaatctctgctgtggacaTTGAGTCGCTATCACTTCATCGGTTATAGTCACTCTCACGAAGACTGGTGCTGTTCATCTTGGTTGAAGAGATCAAACAAAGTTCTAGAATTCTTATAGTATGTGTCGTTTTAATTTAGAATAAATGATTTATGCTGTTGAAATTATGGTTCTAGGCAAGTATGTactcatgtaaaaaaaaaaaaaaaaagatatagtTGTATACTATAAACTAATGTACTATGTGAATTAAATGGAAATATCTTTAACATTCCTTCAACCATGAATATCAGCAGTATCTTTACTGAGGTACAGCTTGTATCTGCTGAAGACTTTGTTAGAATGGCTTAATCTACACTAAAGACTCAGGTCAACTCTTCTCAGAGTGATGCTGGCATCATGAAAGGGGGCCATATTAGATTCAGTAAAAACTTGTTGGCCTCTTGCTGGGGTCAGCCCAACATAAACATTGTTTTAAGCGATATGACGAACACATTGTTTCAACATAGTTTTACTGTGTCAGTTTGTTATTACTCTAAAGACACAACAGTGACTCTATTCAAGACCTAGATGCAGATTCGTTTAGAAACGGTCCTGTTAACATACTCAATCCTTTTTAAATCCTGTTTGTTGATAGTCAGCTAAATATGTCACCCGGGTTGGCCTCCACTCAACCTTATCATTCAGCAAATAACTGTTGTTGGTTCAATGTGCGCAATGCCCAATCATATAGTAAACTGCCTTTTGAAGCTGGTTGAAGGAACATGTAGTGTATGTTTAATTATCAAGCTCATAGAATAATAGTAAAACATGTTCTCAAAATTGTCCAGTGTGCTCTCTAGCTAACTGTAGTTTATCCTCCATCTTGTGTAAAGAATTTGCTTTAGTTGCCCCTATTTGCACCCACAGGCAGTTATTCAATTTCCATTTTAACCCAGTCCCACAGATGATTTCCCACAGAGGTCATACTGATAGCCATTGTGTGTTTGCTGTGTATTGCTTCAGTTTATACAAAAGTTCATGTTTATTGGTATTTGTTTGTTAATTGTGATTGCTACACTAGATCAAATGATACTGTTACTCTCTTTTGATTCTGTTGAATCTGTCTCCCCAGCAGTAGAATACACACTTTGTGTTTTACCGTTTGACTGTAGTTTTATGTTCATTGATTCTTCATCAAGTGTCATTCTTTTTGTGACCTTCATTTTTACATTTCTGACCTTTTAGAAGTGACTGCGCATCCTTGCAGTATATGGGGTGGAGAGTCCATGAATGAATACTGTATAAAATGTGCCAGGAAGAAGTAAGACACAAACAAAAAAAGAAcctggtactgtacataacagCCATTTCATTGCAGAAAACGAATTGAAAATATTGTATTATAGAGTGTACAAAAAATGTTTAGATTATATAGTTATTTTATAAGATGTCAAATAGATtgaatatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgttacaTGATTTTAAAGTAAAACAAACAGAAGTATTTTGTaacacattattaaagtgtcttaTTGGGGAGCTgagttttttattttcttcaattCAGCAAGTTGGTGTTGCACAGTTGATAAtattgtatggcttgtttttctctctgtatATACCATCAAAAATAAAATTGTAACATATTAATattgttttaaaataaattaataaaaaaagttTACATTCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1009007 lncRNA downstream 2243 39005186 ~ 39022000 (-) True G886839
TU1008954 lncRNA downstream 104308 38917578 ~ 38919935 (-) True G886799
TU1008895 lncRNA downstream 115481 38906460 ~ 38908762 (-) True G886744
TU1008917 lncRNA downstream 143474 38858769 ~ 38880769 (-) True G886764
TU1008879 lncRNA downstream 209255 38811888 ~ 38814988 (-) True G886729
TU1009065 lncRNA upstream 68687 39129115 ~ 39129417 (-) True G886892
TU1009068 lncRNA upstream 77306 39137734 ~ 39138012 (-) True G886895
TU1009104 lncRNA upstream 126696 39187124 ~ 39187343 (-) True G886929
TU1009060 lncRNA upstream 133667 39194095 ~ 39194480 (-) True G886887
TU1009111 lncRNA upstream 134203 39194631 ~ 39194846 (-) True G886936
XM_021618407.2 mRNA downstream 8123 39006334 ~ 39016120 (-) False radx
XM_021618408.2 mRNA downstream 8123 39006334 ~ 39016120 (-) True radx
XM_021618409.2 mRNA downstream 9341 39006334 ~ 39014902 (-) False radx
XM_036990226.1 mRNA downstream 23512 38984255 ~ 39000731 (-) True LOC110533855
XM_021618403.2 mRNA downstream 52181 38952608 ~ 38972062 (-) True LOC110533854
LOC110534920 mRNA upstream 59726 39120154 ~ 39121838 (-) True LOC110534920
XM_021618418.2 mRNA upstream 123331 39183759 ~ 39185578 (-) False rpl36a
XR_005034354.1 mRNA upstream 137537 39197965 ~ 39199921 (-) True LOC110533862
XM_036990229.1 mRNA upstream 249758 39310186 ~ 39634685 (-) False LOC110533864
XM_036990230.1 mRNA upstream 249758 39310186 ~ 39634685 (-) False LOC110533864
TU1007856 other downstream 783684 38238950 ~ 38240559 (-) True G885767
TU1007025 other downstream 1320457 37598633 ~ 37703786 (-) True LOC110533823
TU1006746 other downstream 1705379 37316917 ~ 37318864 (-) True G884736
TU1006338 other downstream 2358886 36659518 ~ 36665357 (-) True scn4bb
TU1005624 other downstream 2631716 36391103 ~ 36392527 (-) True G883754
TU1009059 other upstream 123270 39183698 ~ 39185494 (-) True rpl36a
TU1009518 other upstream 156885 39217313 ~ 39217738 (-) True G887329
TU1010435 other upstream 794538 39854966 ~ 39893703 (-) True ksr1a
TU1010822 other upstream 1436286 40496714 ~ 40547367 (-) True LOC110533878
TU1012917 other upstream 2922273 41982701 ~ 41984417 (-) True G890360

Expression Profile