RNA id: XM_036990263.1


Basic Information

Item Value
RNA id XM_036990263.1
length 5280
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110533875
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40366196 ~ 40378922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAATTATGAGTCGTTTGTTTTCTGGCCAGTTACAGTTGCCAAAGTCAATAAGCTTGCAATCATTGTTCACCCTAACAGAACAACCAAATTCCTGATATGATTTATGACAATTATTTTCCACGGATGACAATATTTTGATTATGTTCTAGGTTATCGTGTTCCTTGTACCCAAAGCTCAAGCTGCTACTCGAAACGCCCATGTTTGCCTCTACCAAGAACAGTGCGCGGTTGTAGAGCGCATGCTCAAAACGTCGTTCTACGCAAATTTGCGCCAACTCCGTGGTGAGGCTGAAGGAAGCAGTATCAGGGGTGATgcttagcaagctagctagtgtTTCTTCACAACAACAATAACCATTTAGCTTTCTAGAGTTTCGGCACTGTTTTTACCCGTATATAAGGACAGTACTTCATCTATTTGCAAGTATATGTCAGGTATGTGAGATACTGTGTTATTTTATAGCCGTATTTAATATGGAAGGGAACAGATATGCCTCTGCCTCTATAAACAGCatcatagctaacgttagcttcaaCCACCGGCGTAGGGACAAGCACCATAATGTACAAAGCTAGGCCTCAGTAGTAAGTCCAAAAGCCGAATATCTGTGGTATTGTACCTTATCTTTTCTCCAATTTGGCAACAAGAGAAGTACTGTTTTGTCTTTTTTGCATTACACAGTTGGGACAACGAAGCGGAAGATAACCTATTAAGGACAaccatgctaacgttagctagctaagccAAGGATTTCATGAAGAAAGGACTTCGTCTTTGAACTGAAGGGAGGCTTTGGATCTTACTGGGATCAACAGTGTGTTCTCCATTTCACTAACAATTAGCAAACTAACCAATaggaacttgttttttttttcaagacAGCGTTGTTTGGGAAATAATCTGCTGACAGTGAGGATATCGCCTCTTGTCAGACATTGCTTGAAGTATTCGTTAAACAGAGCTGATTGCTTGCTCACTTCGGCTGTGTTTGAATGTGGGATAAAATGGAGACCCCAACGATTGTCTACGATCTTGACACTTCTGGTGGTCTTATGCAGCAAATACAAGCATTGCTCGCGCCTCCCAAGTCTGAAGATGGAGAAAAAAGAGGTCGGAAACCAGATAAAAACGCACGGAGAGCGGGGAGAGCCACGAATCACGACACCTGTGACAGTTGCAGAGAGGGGGGTGACCTCCTCTGCTGTGATCATTGTCCCGCCGCCTTTCATCTACAGTGCTGCAACCCACCTCTGAGTAAGGAGATGCTGCCCCCTGGAGACTGGATGTGTCATCGCTGCATGGTGCGTAGGAAGAAGCGGGAGATAAAGAAGGAGCAGATGAATGGTCTGCTGGACCGCCAGCTGTCTAAGCAGTCTCCCTCTCCTGCAGCAGAGTTCGAGCTGGCCCCGGGCACCCTGAGGCTGGACCCCACGGCAGCAGTAGGAGGCACCACAGGCCTGAGAGCTGCAGCTGTGGCCCAGGTCCGTCTCCTGGAGAGGAGGCCCAGCAGTAGACCCAACACCCCAACCTCCACCGCCTCCACAGACACCGCCACGCCCTCGGAGCAGAACGACATGGATGATGACATGCTAGACGTGGAGGACGACTCGCAGGGCTCAGAGCCCGAGAGCTCCACCCCACACCTCAAGAGGCCCTTTGATCTTCTGATAGCAGCAGCCATGGAGAGGAACCCCACGCAGTTCCAGCTTCCCAATGAGCTCACCTGCACAACTGCACTTCCAGGAACCAGTAAaaaaaggaggagagatgagatgacAGGGAAGAATGTGAAGCGACTGCAGCATGAGCTGGACCACAATGGGCTGGTCCCACTACCGGTGAAGGTCTGCTATCCCTGTGGCAGGAGCTGCAGGTTGGCACCATTAATCCAGTGTGACTATTGCCCCCTCCTGTTCCACATGGACTGTCTGGACCCCCCTCTTACTGCCATGCCTGTGGGCAAGTGGATGTGTCCCAATCACATAGAACACATGGTGCTGAAGCAGAGGAGCCTGCCGTTGAGCGGTCGCTGCCAGCTGTTTGACCAGTTTCAGGACAGGATGTCCCAGCATGCCGTCAAGGTGGACTTCCTGCAGCGGGTGCATCGTCTCAACACCCCCGTCCGCCGAGGAGCCCACACACAGCTGAAGAAAACCCTCAAGGTCCCTGATTCTATAAAGTCCCAGTACAAGTGTCCCCCGGCCATGATTGCCCCGGCAGGGATCCGCAACGGGGAGCTGGTCTGTAACAGCAGTTCAGAAGCCCCTCAGCAGCACTTTACACCCTCTCAGCACTTAACCAGTGAGGATGAGCAACAGGAGTGGCTCAGAGACGTCATCACACTCCAGTGCAGCATAGTGAGACATCTGTCAGCCAAGCAGAAGCTGTCGTCCGAATGGGACTCTGGGAAGACGGACATGGCCGACATCAAACCCTGTGTCACAGCAGAGGAGGCTAGTGCTGTGTGCACTTCTAACCAGACTGAGTCGCCAGCCTCCAAGCCTAAAGCTGACAGTGCAGCAGTTTGCCTCCAGGGGGCGCCTGCACTCAAGGAAGGGAAGTGTAGCATGTGTACAGAGAAGCCTTGTCACAACTGTGGGCCCAGTAATGTTAACGGTCCCCTGGAGGAGCAGCGGGCTTGGACCAATGGGAGTCCAGAGGCCTGCAGACAGGACAACCTCCACAAGCTGAGAGAGCCCTCAGGTCTTGATAGGCCTGTTCCTCAGACACCTGCAGCTTCCAGCCCGGAGTCACCCAACCACACTGGTAAAGCTGTGGTCAAGACCGAGAACACCCTCTTAAGACCCTGTGAAGGGACGGCCTCCTCATCCACCTGTCCCTTCAAACCAGACCTCAGAGGCCCCTCTCCACCTCACAGACCCTCCCCAGGCACACAGGGCCCTGCTCTaaccagtagtagcagcagcactgTGGGGTCCTGTGCCCTCACTCCACCCAGAGCACCATACCAGATCAAGAGGATGACCAAGCTGGGCTCCACCCCACCAGCAGATGGGAAAGTCAGTCGTGATGCTGTGACCACCAGGAGTGGTCCTCTGCTCCCCAGCTCTTTCTCTATGGTAGACCTGTCCAGCTGTCTGAAGGCTGTGGCAGACTGCCATGGTGAGATTCAGATGAGTAGTCTGGATGAGAAGTTAATTGAACTCCTGGCCTGGCAGAGGATCCAGCAGCTGTTTGGGCCTAAAGCCCCTTCCCCTCCACAGAGCAGCTGTATCAGCCTACCTCCTGTTCCACAACCCCAGCCTACAGAAGCACAAAACAAGAATATCCAGGCCAGGGCTGTGTTTTATCCTTTGACTGGGAAAGGAGGAGCTGTCCGTATGTGCTACAGAAGCCTGTACATAGGAACTGGCGCTGACATGGACGTGTGCCTTACAAACTATGGTCATTGTAATTATGTTTCAGGAAAACATGCCTGTATCTTCTATGATGAGAACACCAAGCAGTATGAGCTCCTCAACTACAGTGAACATGGGACAACGGTGGACAATGTGCTGTACTCCTGTGACTTCTCTGAGAAGACTGGGCCAAGCCCCTCCAGCAGCCTGGTCTCCAAAGTGCAGAACATTATCAAGCGCTGCAAGAGGAGGAAGCAGGAAGAGGAAGGGGCAGCGGAGCCCATGGTGCTAGAGGAGGGGGTGATGAGACCGTGTCAGGTGACTCCTTCTAGCCCCTGCTGCGACTGCAAGGCCAGCAGCTCCAGTCTGATCGGGGGCAGTGGAGCAGGCTGGGAGGGCACTGCCCTGCTCCATCACGGCAGCTTCGTCAAGCTGGGCTGCATGCAGTTTGTCTTCAGTATTACAGAGTTTGCCTGCAAGCAGCCCAAAGAGGAAACCTTTAACAACCCAACTACCACCACTGCCACCCCCCAGTGCCAGGAGGGAACAGAACCCTCTGACAAGCACACGTCCACCTCCCAGCTCCACCAAGTGCCAGTGCTGCaccctaaccctgtcccctaGCCCAATCATGTCCCCTCAGCAACAAGAACCAGCCTCAGCAGCTATACTTGTATACTGCATCAAAAAGAGAGAGCTTTTTTGATGTTCATACATTTGCATGAAATGAAGTATTTTTCAGTCAGATTTTGTGGGCAAATTGCACATACAatttgtattgttattttttgtAACTGGACAATTTTCTGAACGTTTTTGAATTGGCTTTGAAAAAGGGGGATGGTTTATCGTTGACATTATGTGAAGAAATGTAAACATCACCAGGTTTCCAGCATACTTGTAAAGAACTCCAATCATTCTATTTTTGCCAGTAATGATGgcataaactttttttttttcctctGAAAATGCAACTTTGATTTACTTTTTATAAATTTAGTTTGTGTACTGTATCTGAAAATGTAGTTGTGTTCAGATGTTTGTTTTGCTACTATTGCACTCCAGTAGCACTATATTCAAACATACGTGTACACATCCATGCTTATGCATACATGTTGTATACATGGTCGTGTGTgttgaaatacacacacacaaaatatacatGATTAAGAATAATTTTAACATAGAACAAGGGAAGCATAGGATTCTGTATGCAAACTTCAATTATGGCCATTTTGGCTTTTAAATCTTTCCAGTGCTTCATGTGAATTTGGTGCAGTAGTTTTCAAAAGTTTTAGTCCAGTTTTTTTTCAAGTGTCTGTTTTTAGAAATAATTCATCTGAACTTTGTCATGTACTCTGTAAATACAAAGCAACTTTGACTTGGTTTCTTGTCTGTCATAGTCACTGTAAATACCTAAAGATTTTTAAGCGTCAGTGAAGACTGTGGCTTCTGTCATTTCATTCGTCGCTAACAACCAATTGGGCGATTCCATGCCAGCATAGCCCGAAAATATTTTTGGTATccgattgttctggcaattctcacattgggaggaaggatgtttgacatgtttttttacattttgtatcacaaacttttttttttttatcaagaatGTGGCCATTTTAGGCTGTTTTTAGACCTATACATTCCTTCTGTAAGACCTGATGTCTGAACTGTACATAATAGACATCTTGTTGTCATTATACTCCTCATAGTGTAACTCTATTATATGGAATACAGTGGGTATCATACGTGTTCATCCCTTTTGgaatttttttcacatttttgttgcattacaaagtAGGATGGAAatggattttattttttatattttgtcaTTGATCTACACGAGATGCTTCATGTCAGTGAAATAaaattctacaaattaataaATGAAGTAACTAAAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1010073 lncRNA upstream 60506 40168623 ~ 40305690 (+) True G887819
TU1010135 lncRNA upstream 115903 40249897 ~ 40250293 (+) True G887878
TU1010035 lncRNA upstream 243160 40122763 ~ 40123036 (+) True G887795
TU1010026 lncRNA upstream 257098 40109008 ~ 40109098 (+) True G887787
TU1009992 lncRNA upstream 259708 40104804 ~ 40106488 (+) True G887755
TU1010248 lncRNA downstream 51118 40430040 ~ 40430261 (+) True G887979
TU1010247 lncRNA downstream 117795 40496717 ~ 40498305 (+) True G887978
TU1010288 lncRNA downstream 133521 40512443 ~ 40513908 (+) False G888019
TU1010289 lncRNA downstream 133521 40512443 ~ 40513908 (+) True G888019
TU1010291 lncRNA downstream 135238 40514160 ~ 40547748 (+) True G888021
XR_005053663.1 mRNA upstream 5767 40152031 ~ 40360429 (+) True LOC110533874
XM_021618442.2 mRNA upstream 5769 40152031 ~ 40360427 (+) False LOC110533874
XM_021618444.2 mRNA upstream 5769 40152031 ~ 40360427 (+) False LOC110533874
XM_021618441.2 mRNA upstream 6748 40152031 ~ 40359448 (+) False LOC110533874
XM_021618450.2 mRNA downstream 12454 40391376 ~ 40393654 (+) True LOC110533877
XM_021618454.2 mRNA downstream 91097 40470019 ~ 40475795 (+) False LOC110533880
XM_021618453.2 mRNA downstream 91098 40470020 ~ 40475795 (+) True LOC110533880
XM_021618452.2 mRNA downstream 100817 40479739 ~ 40495940 (+) True aatf
XM_021618461.2 mRNA downstream 482429 40861351 ~ 40879099 (+) True LOC110533884
TU1008492 other upstream 1554057 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 3515043 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 3564611 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 4070649 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 4679623 35682655 ~ 35686573 (+) True LOC110533748
TU1012334 other downstream 1333405 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 1333405 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 1333405 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 1699293 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 2603760 42982682 ~ 43109676 (+) True G891133

Expression Profile