RNA id: XM_021618456.2


Basic Information

Item Value
RNA id XM_021618456.2
length 2098
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC110533881
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40631165 ~ 40639661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAATCATTCTATATCAATTTTTGAATGCACCGATGAGAGATCCAGTTTACACAGGGACTGCCATGGCTTATCACCCTTTCCACGCTCACCGGCCGACCGACTTTCCTATGTCAGCCTTCCTTGCAGCTGCACAGCCTTCCTTTTTCCCTGGACTGACGTTGTCTCACGGCGCTCTCACTAAACCTCTATCAGGCCATGCTTTATCTGGAGCCGCGGAAGCGGGACTCCACGCGGCGTTGGGTCATCACCATCAAGCGGCTCACCTCCGCTCCCTCAAGAGCTTGGAGccggaggaagaggtggaggacgACCCCAAAGTCAACCTGGAGGCCAAGGATTTATGGGACCAATTTCACAAAATAGGAACCGAGATGGTTATTACGAAATCAGGAAGGAGGATGTTTCCCCCATTCAAAGTTCGTGTCAATGGGCTTGATAAGAAGGCCAAGTATATCCTCCTTATGGATATAGTCTCTGCTGACGACTGCCGCTACAAGTTCCACAACTCGCGTTGGATGGTAGCTGGGAAAGCCGACCCGGAGATGCCCAAACGAATGTACATCCATCCGGACAGCCCTGCCACAGGGGAGCAGTGGATGGCGAAGCCTGTTGCATTTCATAAACTCAAGTTGACTAATAATATCTCCGACAAGCATGGATTTACTATCCTGAATTCGATGCATAAATACCAGCCCAGATTTCATATAGTGAGGGCCAACGACATTCTGAAGCTCCCTTACAGCACCTTCCGGACATATGTTTTTCCAGAGACAGATTTTATCGCTGTCACTGCATATCAGAATGACAAGATCACACAACTCAAAATTGATCACAACCCATTTGCTAAAGGGTTCAGAGACACGGGAAATGGACGACGGGAAAAGAGGAAGCAGTTAACCCTTCCATCGCTGAGCATGTATGAGGACCGGGACCTTAAAGGGGACGGGGACTGTGCCGATTCAGATGACTCCTCCTTTGAACAAACCACCGGAGGGGACTCGGTTCATTCTCCACTGGGACATGTAACTAGTCCACTGAGGTTCAACCGAACCAGTCGAGACGACAAGAACTGCACTGACAGTGATCAGGAGCTTGACCCACAAGAGGAGCGCTCCATCGCAGCCAGCAGCCCCGGGCCTGAACCAACCTCTCCTCTCAGCCCTAAAGGCGATAACAGAGTGAGGGATAGGAATCTTCTGGAAAAAAAGAGCGAACACCTGGATTCAAGGAAAGAGAGCGACTCTGTGTTCAGTATTCGAAATCTTGAAAAGGACAAGTTAGATCATAAGCACCGCCAAGAGACGGAACCTACAAAGAACAACACGGATAGTGGGGGCATCAGTGGGGTGAAAGATGGGTTTTCTCCTTTGATGGTACAGACGGAGAGCCCATCACACTTTAGTGCGAGTCACCTGCAGAGTCTGGCATTTTCTGGTTTGCACAGTCAACAGTTCTTTAACCCTTTGAATACGGGACAAATGTTGTTCCACCCCGGACAGTTTGCGATGGCACCAGGGGCATTCTCCACCATGGGCATGGGGCATCTGTTGACATCTGTTTCTGGAGCGAATGGCCTGGAAAACGGAAGCCTCTCCTCTCAAAGCGCGGGCTGTCATAGTCACTTCCCGTTCCACCTGTCACAGCACATGCTAGCATCTCAGGGAATTTCGATGCCACCTTTTGGAGGACTGTTCCCGTATCCATACACCTACATGGCAGCTGCAGCTGCTGCGGCCTCGGCCCTCCCCTCCTGCACTGCAGCCTCCTCATTGGGCAGAAACCCTTTCCTCACCACCTCCCGACCACGGCTGCGATTCAACCCTTATCAGATACCCACATCTATTCCTTCAAGCACAAACCTGCTCACCACAGGGCTGCCGGGCAGCATCAACGCACCATCCGACCTGTCCAAATCAGGCAGCAGAGAAACAAGTCCTGTATCTGAgcaccacagccacaaagtggcCAGCCAGAGGACGGCATCCCCCAAAACATCTAAGAAGGATTCCACTAACGAACTGCAAAATATACAGAGGCTGGTCAGAGGACTGGAACAACCCAGAGAAATGTCTCCTGCCATTGACGCTCCAAAGTGA

Function

GO: NA

KEGG:

id description
K10176 TBX2; T-box protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1010852 lncRNA downstream 169681 40462350 ~ 40462564 (-) True G888505
TU1010851 lncRNA downstream 170229 40461676 ~ 40462016 (-) True G888504
TU1010815 lncRNA downstream 195306 40436714 ~ 40436939 (-) True G888485
TU1010765 lncRNA downstream 253370 40331020 ~ 40378875 (-) True G888437
TU1010618 lncRNA downstream 517342 40114658 ~ 40114903 (-) True G888293
TU1010965 lncRNA upstream 15708 40654967 ~ 40655198 (-) True G888612
TU1011040 lncRNA upstream 84170 40723429 ~ 40723710 (-) True G888687
TU1011055 lncRNA upstream 91631 40730890 ~ 40731782 (-) True G888700
TU1011077 lncRNA upstream 108105 40747364 ~ 40747573 (-) True G888722
TU1011111 lncRNA upstream 136659 40775918 ~ 40776146 (-) True G888752
XM_036990268.1 mRNA downstream 84852 40496720 ~ 40547393 (-) False LOC110533878
XM_021618458.2 mRNA upstream 200843 40840102 ~ 40852716 (-) False LOC110533882
XM_021618457.2 mRNA upstream 200843 40840102 ~ 40852717 (-) False LOC110533882
XM_036990281.1 mRNA upstream 200843 40840102 ~ 40853480 (-) False LOC110533882
XM_021618459.2 mRNA upstream 204648 40843907 ~ 40852716 (-) False LOC110533882
XM_021618460.2 mRNA upstream 204703 40843962 ~ 40852716 (-) False LOC110533882
TU1010822 other downstream 84878 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 738542 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 1414507 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 1446751 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 2391686 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 1343442 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 1348452 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 1437482 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 2419751 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 2554423 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile