RNA id: XM_021618459.2


Basic Information

Item Value
RNA id XM_021618459.2
length 1725
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110533882
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40840102 ~ 40853480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacacagGCGGTTCAAATACCTTACGACCAATCGTCGAAAAATAAACAGAAGCAAAGAAGGAACGGGGAAAAGGTTTTTCGATCCAGATATCATTGCAGATTTTGGCTTCAAACACGGCTTAGCATAACCGGTGGACAAGTATTTATTGTATAGCTTTGCTTGGATTTTTCATGGCCATGAACGACGCATTAATTTTCCGAGTTAGTGCATTCTCCGAGCAAGGAGGAAGGAGATACATGGAGGATGTTATTGAGTTTAAAGTGGAGTACGAACCGCCTGAACCAGAGCCAGCAGAGGGTGGTCTGAATTCGGTAGAACAACAAGATGAGTCAAAAGTAGAGAAACAGGAGAATGGTCATACTGAGCAGACCATAATAAGCAATTCCCCCGAAAACGTTCAAGAATCGGTGCCTGTTAGTGCAATGTGGACAGAAAACATAACATGTGAGAAGCATGGGGACACTTCCCAGGCAGAAGTTCCAGCAGTGCACACGGTCGTTCGGAAGTCTGTGGCGTTTTTTGGTGTATTTGACGGTCACGGAGGGCGAGAAGCTGCTCATTTTGCGCGAGACAATCTGTGGGGTATTCTGAAAAAGCAAAGGGGGTTTTGGTCAGAAGATCAAGGGGAAGTCTGTGAAGCAATTCGAAAGGGCTTCATTGCCTGCCACCATGATATGTGGAAAGAGCTACCTGAGTGGCCCAAGACTCTGACCGGCCAGCCCAGTACTGCAGGAACAACGGCCAGTATAGTGCTGATCCGGGGGGATCTGATGTACGTAGCCCATGTGGGGGACTCGGCAGTGGTTGTTGGGGTGAAAGAGCCCGGTGAAAAGAACATCAGAGCCTTGGAAGTCACACAGGACCACAAACCTGAACTTCCCAAAGAGAAGGAGCGCATTGAGAGACTTGGGGGCAGTGTAGTGAAGAAGTCCGGGGTGAACCGTGTGGTGTGGAAGAGGCCCAGACTGACCCACAATGGCCCTGTCAGGAGGAGCACTGTCATAGACCAGATTCCCTTTCTCGCTGTGGCCAGAGCTTTGGGGGACCTGTGGAGCTATGACTTCTACAGCGGGGAGTTTGTGGTCTCTCCAGAGCCTGATGTCACTGTAATGACCATTGACCCTAAGAAGCACCGCTACATCATCCTGGGTAGTGATGGCTTGTGGAACATGATGCCAGCTAAGGATGCTGTCGCTATGTGTGAGTGCCACGATCAGATGGTGGGCCCTAAGGGATGGTCCTGTGCCAAACGGTTAGGATGCACGGCCTTGCTGTTCTGGCGCCAGCGCATGCTCCGTGCAGACAACACAACGGTCATAGTGATAACCGTGCAGCACCCTGATGAGCCACCCATGACCATGCACCTACAGGAGCTCTATGTCAATATGGCAGAGGGCCTTGATAAGATCCCCCCCGTTACAACCGCAAACTCTCCCCGCCGTTACGACGGCCCCATTATGacagaggaggaggatggggaggtcTGTTTTGATGAAGAACATGGGCATTGGCGACACCTAGAATGGGAGTGAGAACCCAGAGGTTAACACTGTGTCCTCTGTGGGTgagcctctccccctcccagctCTGGAGTGGAGGAATAGTCTGTGTGAGGCTGGTCTCTGTCCCCCTTCAGAGCCCCTGGCAGAGGTGGACTCAAAGAGAGTGACCCCAACAGACAGAACCTTGAACGTTTGTTCAATTGAAGGCACAGGGACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011603 lncRNA downstream 981 40840140 ~ 40842926 (-) True LOC110533882
TU1011646 lncRNA downstream 13395 40830163 ~ 40830512 (-) True G889243
TU1011634 lncRNA downstream 26128 40817459 ~ 40817779 (-) True G889231
TU1011631 lncRNA downstream 31797 40811811 ~ 40812110 (-) True G889228
TU1011628 lncRNA downstream 34894 40808740 ~ 40809013 (-) True G889225
TU1011613 lncRNA upstream 84705 40937421 ~ 40938369 (-) True G889210
TU1011704 lncRNA upstream 89532 40942248 ~ 40942485 (-) True G889300
TU1011800 lncRNA upstream 233368 41086084 ~ 41086436 (-) True G889395
TU1012230 lncRNA upstream 779662 41632378 ~ 41632587 (-) True G889803
TU1012267 lncRNA upstream 805895 41658611 ~ 41658931 (-) True G889840
XM_021618455.2 mRNA downstream 204246 40631165 ~ 40639661 (-) False LOC110533881
XM_021618456.2 mRNA downstream 204648 40632245 ~ 40639259 (-) True LOC110533881
XM_036990269.1 mRNA downstream 296514 40496720 ~ 40547393 (-) False LOC110533878
XM_021618479.2 mRNA upstream 404108 41256824 ~ 41371473 (-) False LOC110533890
XM_021618480.2 mRNA upstream 404108 41256824 ~ 41371473 (-) False LOC110533890
XM_021618478.2 mRNA upstream 404108 41256824 ~ 41371993 (-) False LOC110533890
XM_021618475.2 mRNA upstream 404108 41256824 ~ 41441749 (-) False LOC110533890
XM_021618473.2 mRNA upstream 404108 41256824 ~ 41441750 (-) False LOC110533890
TU1010822 other downstream 296540 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 950204 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 1626169 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 1658413 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 2603348 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 1129985 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 1134995 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 1224025 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 2206294 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 2340966 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile