RNA id: TU1011603


Basic Information

Item Value
RNA id TU1011603
length 2447
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110533882
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40840102 ~ 40853480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAATCGGGAGAGGGGGATCCATGGTGTTTTGAATCGGGAGAGGGGGATCCATGGTGTTTTGAATTGAGAGGGGGATCCATAGTGTTTTGAATTGGGAGAGGGGGATCCATGGTGTTTTGAATTGGGAGAGGGAGATCCATGGTGTTTTGAATCGGGGGATCCATGGTGTTTTGAATTGGGAGAGGGGGATCCATGTTGTTTTGAATCGGGGGATCCATGGTGTTTTGAATCGGGAGAGGGGGATCCATGGTGTTTTCAGAACTACATGTGTTAAATGTAGAATATCCAGAATGTGCTACCTGCTATGAATACTTTATATATCCCCATAGTTGATTTATTTCAAATAGTTGAATCTTTCCCTGGTTCCCCATGAATAGTTGGCCTTGCATCATTGTTCTCATGTATTGCTTTCAGCTATCCACTGGAGGGCACCCACTGCAAGTGTAAATGTGGTGTCAAGTCGTTTCAGTGCTGTGTGATTTACTTTGCAAGTGTTCAAATACCCCATATTCATAAAGTATAGTGGATTTGATCTCATGAAAGTTATGATTGTTGTGTCAGTTTAATGCCCTCTTGGATTTCTGAATCCATAAAAGTGTGAATTAAATCTTAAAACGATTAACAAATGACAGCTCATTATGTCACCCCGTTGGGAAGTTGGCCTTGCTTGTATGATGAGATATTTGGAGTTAAAATATTTGACTCAGCTAAAATGTGTTTGTTGACAATTACCTTAAACTTCAATCAGTCAAATAGTGTTATGTTTACAAAGCTGAGTTCTCATAACCAGACAAGTGGAATACACCTctgaaatacactacatggccaaaagtatgtggacacctgcttgtcaagcatctcattccaaaatcatgggcattaatatgaagttggtcccccccctttgctgctataacagcctccactcttctgggaaggctttctactagatgttggaacattggtgcagggacttgcttccattcagccacaagagcattggtgaggtcaggcactgatgttaggcgattaggcctggcttgcagttggtGTTCCATTTCATCCCTAAGGTGTgcagttgaggtcagggctctgtgcaggccagtcaagttgttccacaccgatctcgacaaaccatttatgtatggacctcgctttgtgcacgggggcattgtcatgctgaaacaggaaggagccttccccaaacttttgccacaaagttggaagcacagaatcgtctagaatgtcattgtatgctgtagcgataAGATTTCCTTTCATTGGAACGAAGTGGCCCGAACCATGAGAGacggccccagaccattattgctCCTCCACCAAAttgacagttggcactatgcattgggacaggtggcattctcctggcatccgcaaaCCTAGATTcatctgccagatggtgaagcttgattcatcactccagaaaacgcatttccactgctccagagtccatcggcggcaagctttacaccactccagccgacttgGCAttttgcatggtgatcttagccttgtgtgcggttgctcggccatagaaacccatttcatgaatcacccgacgaacagttcttgtgctgacgttgcttccagaggcagtttggaactcggtagtgagtgttgcaaccgaggacagacgatttttacgtgcttcagTACTCGGGGGGTCtcgttttgtgagcttgtgtggccatcactttgtggctgagctgttgttgtccTCTATGTTTCCACTTCGAAATAACAgctacttacagttgaccggggcagctctagcagggcagaaatgtgatgaactgacttgttggaaaggtggcatcctatgacagtgccacgttgaagctcgtcagtaaggccattctactgccaatgtttgtctatagagattgtaaggctgtgtgcttgattctatacacctgtctgcaacgggtgtggctgaaatagcagaatccactaatatGAAAGGCTGTCCACATACTCTTGTATATATATGGTGTATGATGCCATCTTTAGTGCACCCATGGCTCACTGGATTTACAAATCGGATAATTGCACATTTGCAGCACAGATAATTGTTCTTACACCAACCATTGTGGTACCATTGACACTGCAGAATAATGTCGATCTTGTACAGGCATAGATTAATACAATTGTGTTATTTTGAAAACAGAAAAATATCTTCCATAGCATTGAAGTGCTTTTGTAAATATGATTTTATTTGTACAGTATATTATGCAAAACCGGCATTGGGTTTTACATGAATGTGGCATGATCAGCTCTGTTTGTGTTGAAGTGTATTAAGGGATGGCTTTATTAATAGAAATTATTATTTGCTAGATAGATTACAtagacatttccactttacaTCCATTACAGTGATAATCAATGTATGTCTTGATGTCAAACTGCAATACCTGCCTTGAATGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011646 lncRNA downstream 9628 40830163 ~ 40830512 (-) True G889243
TU1011634 lncRNA downstream 22361 40817459 ~ 40817779 (-) True G889231
TU1011631 lncRNA downstream 28030 40811811 ~ 40812110 (-) True G889228
TU1011628 lncRNA downstream 31127 40808740 ~ 40809013 (-) True G889225
TU1011617 lncRNA downstream 45677 40794230 ~ 40794463 (-) True G889214
TU1011613 lncRNA upstream 94495 40937421 ~ 40938369 (-) True G889210
TU1011704 lncRNA upstream 99322 40942248 ~ 40942485 (-) True G889300
TU1011800 lncRNA upstream 243158 41086084 ~ 41086436 (-) True G889395
TU1012230 lncRNA upstream 789452 41632378 ~ 41632587 (-) True G889803
TU1012267 lncRNA upstream 815685 41658611 ~ 41658931 (-) True G889840
XM_021618455.2 mRNA downstream 200479 40631165 ~ 40639661 (-) False LOC110533881
XM_021618456.2 mRNA downstream 200881 40632245 ~ 40639259 (-) True LOC110533881
XM_036990269.1 mRNA downstream 292747 40496720 ~ 40547393 (-) False LOC110533878
XM_021618459.2 mRNA upstream 981 40843907 ~ 40852716 (-) False LOC110533882
XM_021618460.2 mRNA upstream 1036 40843962 ~ 40852716 (-) False LOC110533882
XM_021618479.2 mRNA upstream 413898 41256824 ~ 41371473 (-) False LOC110533890
XM_021618480.2 mRNA upstream 413898 41256824 ~ 41371473 (-) False LOC110533890
XM_021618478.2 mRNA upstream 413898 41256824 ~ 41371993 (-) False LOC110533890
TU1010822 other downstream 292773 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 946437 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 1622402 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 1654646 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 2599581 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 1139775 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 1144785 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 1233815 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 2216084 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 2350756 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile