RNA id: XM_021618469.2


Basic Information

Item Value
RNA id XM_021618469.2
length 5705
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110533887
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40920569 ~ 40937315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCATTTCTAATCTACGGAATGACGTTTATGAGTGACGTAGTTTGCTGCTTTTGCGGTTCACAAAATTGGTTTCGTTCCACGTCGTCTTCAATGTCGCAAACCATTACATTTAGCTATTTACCACTGAAATAAAGGTGTGGAAAATACAATTTAGGTGGCTCTAAGCTCCCTGCCATGTCTTTGGAGAAGACCTCCGACCTGGCCAATGAGAACACATGCTTGCCATCCTCGCTGACCCTTGACCTCCGCTACCCACATAGTGTTCAGTTTGATTCTGACCTGAGCAAGAAAGCCAAAggcaccaccacctcctccaccaagAAGCGCCACAACTATGCCACATCCACACCTTTGGACCTGCTGAATGGCACCATGGGTAGCAATTGCATCGATGAGGAAGAGTCCAgtcaacagagagaggaggagagggtccgGAACCAGGAGAACGAGCAGGGACAGCACTGCACTGGGACCAATGCCAAGTGGCTCAAGGAGGGTCAGAATCAACTTCGCAAAGTGGCAGAGAGGCAGCAGGACCAGAATATAAATTCTGACCAGGATTTGAATCACAACGAGAGCCCAGATGGAAACCCCAACCATAACTCTTTAGTGATGGACCAGCAGGAGGAAGACAGTGAGCAGAACCCGTCTTCTAAGACCCTGAGGTCCCTCTGCTCTGACCTGAATGAGCCTCTGCTGATCGACACCTCAGAGACCCCTCATgggaaggaggaagaagagaaagaggacgGGGATGAGGAAGAGTCTCCACTACTTCCAACAGgtggagagagggacacagactCGTCTGAGGCGCAGAGTAGCAGTGAGTCTCAGAGATATGACAGTGGAGAAGTGAAGGACACATGCCTGCTGTTTCAGGGCAGAAACGCAGCACCCAGTGATGAGGACTCCAGTTGCATGTCACTGTCTCAGGGCAGCACAGCCAACAGCACGCCAGACAGTGACCCAGAGTCTTACTGGGACCGCAGTGCGTTTGAGACGGACACAGACCTGCCTGCAGGGTGGATGCGGGTCAGAGACGAGTCGGGTACCTACTACTGGCACATCCCAACAGGCACCACACAGTGGGAGCCCCCCTCTCCCATAGAGGAGGGAGAAGCCCCAGAAAGACCCTCCAGTACCTCCCCTGCCATCACACCCAACGCGGAGCCAACGTTGATGTGGAATAGTCTCACCCAGTCCCGCCCCAACAGATTTAATGACGAGGAGTTCTGGAAGGAGGAAGATGCCATGGCTGATCAGACCCTAAAGGATTTTGAAGGAGCCACATTGCGTTATGCCTCTATCAACCTCAACTCCTCACAATCTGAAGAAAAGGAAAAGATGAACTCGCTCATCAATGACCCGGAGGCTAAGGTTTTTGCAGTCCGGTCTCTTGGCTGGGTGGAGATATCAGAGGAGGAGATGGCTCCAGGGAAGAGCAGTGTGGCTGTCAACAACTGCATCAGACAGCTCTCCTACCACAAACACAACCTGCACGACACGGCTGGGATCTGGGGAGAGGGAAAAGACATGCTCCTTGTTCTGGAGAATGAGATCTTGAACCTGATAGATCCGTTGGGCCAGACCTTGCTGCACACCCAGCCTATCGTCAGCATCCGAGTGTGGGGAGTGGGCCGGGACAACGGCAGGGACTTTGCCTACGTGGCGAGAGACAAACTGACTCATGTTCTGAAGTGCCATGTGTTCAGGTGTGACACACCTGCTAAGAACATTGCCACGAGCATGCATGACATCTGCTCTAAGATAATGGCCCAGAGGAAGTCATCCAAATCCTCTCTGAACAGACTCAACACAGACCCCTCTAAACTGGCAGACATTCCTTTCCAGGAATTCCCTGCACCAAAGAATGAGCTAGTCCAGCGCTTCCAGGTATGTTACCTAGGTAACGTGCCTGTGGCCAAACCCGTAGGTATGGACCTAGTTAATGTTGCCCTCGACACAGCAATGAATTCCAAAGTCAAGGAAGAGTGGACGTCAGTTACTGTGAACGTGGCCTCAGCCACACTTACCATAATCACTGCTGAGACAGAGGAGGTTCTGTCAGAGTGCCGGGTGCGGTTCCTGTCCTTCATGGGCGTGGGGAAGGACGTCCACACCTTTGCCTTCATCATGGCCGAGGGCCCCGGGGACTTCATCTGCCACATGTTCTGGTGTGAGCCCAACGCAGCCAGCCTCAGTGAGGCCGTGCAGGCCGCCTGCATGCTGCGCTACCAGAAGTGTCTGGACGCCAGGCCGCCCAGTAACAGCTCCTGCCTGCCAGGCCCGCCGGCTGACTCTGTGGCACGCCGTGTGGGCTCAAGTGTCAAGAAGGGAGTTCAGAGCCTGCTGGGCAGCTTCAAGAGGTCCGGGTCCCAGACGCCCTGAGAGGTGCCAACTAACCCACTACACACCACTCTACCCCCAGGCCAAGCCCACCATGATAGCCATGGCTCTCCTCACTCCTCCACTGCCTCTTTATCGCCCCCATTCTGAGGTGTTATGGTAGAACCTGCTTCCCTTCTCATGGGCACTGTGGGCTGCCTGTTGGGTTGGGGTACCAGTAAACCTAGCGCTGCCCAGAGCTCCTCCATGCGTTACACTTCCTTCACTTCACCTTTGGTTGGACAAGTAGGCCATCTTTTCACTTGTTTGTTTAATCTGTGAtttattaaaggtccaatgcagaagttatctcaatatcaaatcatttctgggtaagaataaagtactttactgtgatttgttttcaggtaaaatggtcaaaaagaaacaaaaacagcttcttagcaaagagcagtttctcaagaacatttatttttatcagaagagatgtttggaactctttcttattggtctgttaAGAGGAAACTTGGTCTAGTTTACAAAGTACCAACACTAATTATGCTTAGGAACACAGTTATGTTCTGTAACATTGTCTCTGCTATTTGTTTTGCAGAACAAATAAAGTATATTATTTGTGAAAATAGAAATGGAAAATGTGCAATTGAATTGTGAATGTGGTTGCGCTCATGCCATGTGCTTGTGGCACATGTTGGTTTTCATTTCAAAATGGATATCGACTTGAAAGAAATTAGAAACAGTGGCATGAGAAGTCTACATAAAATGCAGCATGGTGAATGAGTGTTGAGCTGGAAGCACTAAAACATGCTAGCTAATATAATATTTGGCAAATAAatattttggatatatatagTTTGTATAGTACATTTGTTGTAAAGCCGTTTTGTTTTAAGTCCCCTCTTCCTTCTGGGGGAGCTGGTAAACCAGCAAGTGCAACATTTTATTTGTATGTGTATTGCAAATTGCAGTAAAATGTCTGTAGTTCAACTCCTCAAATCTAAAATGGAGATAGCATACTTTTAGAGCATGACTCAAGTTTTAGTGAAACCTCTCATGTCTCAAAGAAGGCTTAGGCTATCTGTTACTGCACTCCAAGTGGACAGTATGTTGGAGGAAGATGGAAGCTTTCTATTGTGTGGAAATGGATCTGAAGTTGGTTTTGTCATCCTTTTGTTGTGATCAGATGTTGTATGTTAGTCTGTTTAACCACGTTCTTTTATCTGtttaacaatgttttttttttacgtgtCAAGTGTTATAATTGTTTTCCTTTACTCCATTCTGTATGTCTAAACTTGTTTTAATTTAGTTACATCTGAGCAGTGACAGCTATTTATAGCTACCCCCTTGTCCTTTCAAACTGTTTATAAGATCTGACAACTTTTATGCCTCCTAATTAATTGGGTCTAAGGGATGAGACACTACTGTCATTGTGATAGACATGTCACTGAACTTGACAGCTTCTGTCAGTAACTCACAAGTCATTTAAGTCCCACTTCCtttttttatttcagtttttaaactCCTGACTGCCCTCTGCTGGGCTTTAGAATAGTTATTTTTCATTAGCAGTGTGTCTGACGACACAACAGGAGAGCTAACAAGCCTGATGCATTTTGTTGTGCAAAGATTGTAATTAcggaaagtgtttttttttttacccacaaACAGTGTTTGTCTATGAAATATTCAGGCTGAAGTATGTGTGGAAGTTTCCTCCTTAGCGTGCAGTATGTGTAAATCATATGAACACTTCGCTGCATATAAACACATCTTTAAAATACACTATCCCATAGTTGACTGACGAGAGCATAGTCTTCCCTTTTTGTTTTTGAATGCAGTTGGTTAAAAATACTTTctttttaaaattaaattattatatttttctaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacagatcTGTGAGATGGAGATGCCTTTTTACCCTCAGTTCCTACCACTATGTGGTCACTGTTGCAGCAGTGTTTCCAAATCTGTATCACCATACTATTTATCCCCCTCCTTCACTTTATTGTGCCACATTTCTCTAGCTCTCATCTGTTTTGGACAGCAATTTGACCAGACAAGAAGCCATAGGTTAGGCTTTGGCCTGGCTTTAGTTGCTCGCTCACTCTTAAGTACTGATTAATAAAAACACAGATACATGTATGTACAATGTAGTTTTTTTTTAGTATGACATtggttttttttttaactgaattTGTGCGATTTTCGTCACGCCTATAATTTTTACTCCTTACTCTACACACTAAGTACTCTACACTACTTACTGTAAATGTCAGACATTGGTTGCCTTGTACAAACAGAGCTTCCTGCTGTTAGTATATCATTTATTTTTAATTCACACTGTAATATTGGACCATACTTTGAGGCCTCAAAAATACTATCAAGAATTTGTGCATGTTGTTGCTATACATGTGACTGTACATTTCACGTGTCAAATGTTTtcccttccatttcaatagtgaCTGTCACTACACATGTCCCTAATCCACTTATTGCTCACCCgtttcttttgttttgttgagaaATCAGTTATAACCTATTTATATATTCAGTGTAGATGTTAACCAGTGGGTGCACTTTGCATGGCTGTTATATAAGAACTGACCCTAGCTTCTCAGAACAGGGGAGCACAGAGGGTCCTCAGTGTGTTTTCAGCTCTGTAAGGACAAATATAGGCCACGATGGGAAGTCTGAGTACTGGTATACGTTAGCCCTACTAACAAAAACCCCATCGGATTGTCAATGTAGATTCCTTGTTGTAATGCTCAAGATATTTAGGTTGCTTTGGTGATGTTCAAGGTTAAATATTTGTCTTATTAAGGATTAATCATTGCAATAAAAATGagtaaaaaatgcttttctttaacTTAAGATAAATTATTGAAGGATTTACATGTGTTGAATATAAGAAACCGACTTTGATCCAAATGTACCGCAACACTACTATGATAGGGCTGTGATCATGTCCTCTGTCATAGGCCATGGAAAATATCTAGGTTCAGTTTTTAACAAACGTGAACTTTTATGTCTGCCTTTTTGTTCTTCagatgtgttcagtgtgttgttAACCTTTCGATGTGAGGTATTTATTAAGCCTTAAGGAAACATTACAATGAAGTGATACCTTTTTGTTCACACTCCTGTTTGTCAGCCATGTGTATTTTTTAGCTTCCTTTTTCTTTAATATCCACTGGTGACTGTAATGCAAAAAAAAGTGGTCATTTACATATCTGAAGAATGTaaatgaggtgtgtgtatgtatatgcaGTACCAATTAAAAGTttgtacaccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011169 lncRNA upstream 10588 40908751 ~ 40909981 (+) True LOC110533885
TU1011149 lncRNA upstream 88082 40832221 ~ 40832487 (+) True G888789
TU1011138 lncRNA upstream 110078 40810096 ~ 40810491 (+) True G888779
TU1011114 lncRNA upstream 141734 40778555 ~ 40778835 (+) True G888755
TU1011101 lncRNA upstream 159439 40760849 ~ 40761130 (+) True G888742
TU1011191 lncRNA downstream 4840 40942155 ~ 40942424 (+) True G888821
TU1011270 lncRNA downstream 122676 41059991 ~ 41060228 (+) True G888897
TU1011277 lncRNA downstream 132786 41070101 ~ 41070332 (+) True G888904
TU1011290 lncRNA downstream 149561 41086876 ~ 41087249 (+) True G888915
TU1012232 lncRNA downstream 696917 41634232 ~ 41634439 (+) True G889805
XM_036990285.1 mRNA upstream 3067 40910127 ~ 40917502 (+) False LOC110533886
XM_036990287.1 mRNA upstream 3067 40910127 ~ 40917502 (+) True LOC110533886
XM_036990286.1 mRNA upstream 3069 40910127 ~ 40917500 (+) False LOC110533886
XM_036990283.1 mRNA upstream 10579 40881111 ~ 40909990 (+) False LOC110533885
XM_036990289.1 mRNA downstream 92416 41029731 ~ 41240128 (+) False LOC110533888
XM_036990290.1 mRNA downstream 92416 41029731 ~ 41240128 (+) False LOC110533888
XM_036990291.1 mRNA downstream 154960 41092275 ~ 41240128 (+) False LOC110533888
XM_021618471.2 mRNA downstream 220157 41157472 ~ 41240128 (+) False LOC110533888
XM_021618470.2 mRNA downstream 249543 41186858 ~ 41240128 (+) True LOC110533888
TU1008492 other upstream 2108430 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 4069416 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 4118984 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 4625022 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 5233996 35682655 ~ 35686573 (+) True LOC110533748
TU1012334 other downstream 775012 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 775012 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 775012 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 1140900 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 2045367 42982682 ~ 43109676 (+) True G891133

Expression Profile