RNA id: XM_036990289.1


Basic Information

Item Value
RNA id XM_036990289.1
length 6812
RNA type mRNA
GC content 0.55
exon number 30
gene id LOC110533888
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41029731 ~ 41240128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATTCCCAGGTAGAACGGGATTAGGTTTTTACTCCCGGGGACCTTTCTCGGTGCTCAGGCTTGGGCGCCTTCTTGTTGATTTATCTCACACCTGAACGCCTTTTCTCTTCTTTTCATCATTTCCTCTCTTTTTGGTGCCTATGCAAGGACATTTAACCGGaaaaatatacatttgcaaacgttTCACAGAAAGGAGGGACCAATAGTAAATCAAACAAGCATTGAACAACTAAACAAAGACGAATAACGACGAAAAGAGGgaTCACTAAAGGGGATGCTGGGCCAATGAGAACCATGTGGGTCATGTGGTCAGTTGTTACGGCTCTCCTTGTCGCCATGCTGCTCAGTATCGCCCATTCAGAGCTGCAGGAAGGAGCCCTCATTCCAGatccagaCACACGGGATAGGGCCAATGAAGAttccacccccaccccctcatCTGAACATGAAGATGACAACTCTCTAGGCTATACAGGATCTCGTCTTCGTCAGGATGACTCCCCTCCCCGGATAGTGGAGCACCCTTCTGACCTCATTGTGTCCAAGGGGGAGCCAGCCACCCTCAACTGCAAGGCGGAGGGGCGTCCTGCCCCCACGGTGGAGTGGTACAAGGACGGGGAGCGTGTGGAGACGGACCGGGACAACCCCCGTTCCCACCGCATGCTGCTGCCCAGCGGCTCCCTCTTCTTCCTACGTATCGTCCACGGCCGACGCAGCAAGCCAGACGACGGCAGCTACGTGTGTGTGGCCCGTAACTACCTGGGCCAGGCCGTCAGCCATAACGCCTCACTGGAGGTAGCCATTCTCCGTGATGACTTCAGACAGAACCCAGCGGATGTGATTGTGGCAGCAGGCGAGCCTGCCGTGCTGGAGTGCCAACCGCCCCGCGGGCATCCTGAGCCCACCATCTCATGGAGGAAAGATGGCACCAACATCAACGACCGGGATGAGCGCATCACGATCCGCGGTGGGAAGCTGATGATCACCAACGCCAGGAAGAGTGATGCAGGGAAATATATCTGTGTGGGGACCAacatggtgggagagagggagagcgagattgCCGAACTGACTGTACTAGagCGCCCAGGGTTTGTGAAGAGGCCCAGTAGTGTTATGGTGCTGGCAGATGAGAGTGTGGAGTTCCACTGTGAGGCGCGGGGAGATCCGGTCCCCACTGTCCGCTGGAGGAAAGAGGATGCAGACCTGCCCAAGGGGAGgTATGAGATCCTGGAGGACCACACTCTGAGTGTGCGTGGTGTGGCACCATCAGACGAGGGCTCCTACACGTGTGTTGTAGAGAACATGGTGGGAAAGGCAGAGGCGTCCGCTACGCTGACCGTACACGTCTTCACTGTGCCCCCAGCGTTCGCCATGCGCCCCAGAAATCAGGTGGTGGCAGTTGGGAGAATGGTCACCTTCCAGTGTGAGGCCACTGGCAACCCCCAGCCTGCCATCTTCTGGCAGAGGGAGGGCAGCAATAGCCTGCTTTTCTCCTACCAGCCGCCTCAGCCCTTCAACCGACTTTCCGTGTCCCAGACAGGCAGTCTGACAATCGCAGACGCCCAGCGCTCAGACGCCGGCTACTACAGCTGTCAGGCCCTCAACATCGCTGGCTCTGTCATCACCAAGGCCCTGCTGGAGGTCACTgacaTGGTGTCAGACCGCCCCCCTCCCGTGATCCGAcagggcccagccaatcagacggCACCTGTGGACAGCACAGTGATCCTGGGTTGCATAGCAACAGGAACCCCCACTCCAACAGTCCATTGGAAGAAAGACGGGGTGGTGGTGTCCTCCGATGACTCCCGCATCACTCAGATAGACACAGGAACTCTGCAGATCCGCTACACTAAGCTTGGAGATACAGGCATATACACCTGTTTGGCATCCAGCCCCAGTGGAGAGGCATCCTGGAGGGCCTACGTGGAGGTGCAAGAGTTTGGAGTGGTTGTCCAGCCGGGTCGACCCACAGACCCTAACCTGATCCCCAGTGCCCCGTCCAAGCCTGACGTGACTGACGTCAGCCGCACCTCTGTCACACTGTCTTGGAAACCCAACCCTAACGCTGGGGCTACTCCCACCTCCTATGTCATCGAGGCATTCAGTCACGCGTCGGGGAGTAGCTGGGTGACTCTGGCTGATCATGTGAAGACGGAGACCTTTGTCCTGAAGAACCTCAAACCAGGTGCCGTCTACCTGTTCCTGGTTAGAGCAGCCAACGCCTACGGCCTCAGTGACCCCAGCCCCATCACTGATGCCGTCAGAACACAAGACACCCCTCCCACCAGCCAAGGAGTGGACCACCGTCAGATCCAGAGGGAACTGGGGGACGTGGTTGTCAATCTGCACAACcccaccatcctctcctcctcctccgtcagGGTGCAGTGGACGGTGGAGCAGGAGTCTCCGTACATACAGGGCTATAAGGTGATGTACAGGGCGTCTGCTGATCTGGGCCAGCCAGGTGGGCAGTGGGGCGTGTTTGAGGTGCGGACCCCTGGAGAGGACGGTGCTGTGGTGCCTCAGCTGAAGAAAGGGGTCACCTACGAGTTCAAAGTGCGTCCCTTCTTTGATGAATTTCAGGGAGCGGACAGCGAGGTTAAGGTGGCCAGGACGCTAGAGGAAGCCCCCAGCGGAGCCCCCCGGGGCGTTACCGTGACGAAGAGCGATGCCAACGGGACCGCCATCCTGGTCGCCTGGCAACCACCTTCCGAAGAGGAACAGAACGGAATGGTACAGGAGTACAAGATCTGGTGCCTGGGCAACGAGAGCCGTTACCACGTCAACCGGACAGTAGATGGCTCCACCTTCTCCGTGCTGATCCCCAGCCTTGCGCCAGGGATACGCTACAGCGTGGAGGTCGCCGCTAGCAACGGCGCCGGCCCTGGGGTCAAGAGCGACGTCACCTTCTTTCAACTTGaCTCTACGGGTCAGATGATGGACAGCCCTGAGGACCAGGACACGCTGTCTCAGATTTCAGACGTGGTCAAGCAGCCGGCGTTCATCGCGGGCATCGGTGCCACCTGCTGGGTGGTCCTCATGGTGTTCAGTGTGTGGCTGTATCGTCACCGTAAAAAGAGGAGCGGCCTCAGCAGCAGCTACGCCGGCATACGCAAAGTTCCATCATTCACTTTCACACCTACAGTGGCCtatcagagaggaggagagtctgTCTGCAGTGCTGGGAGACCTGGGCTGCTGAACATGGGGGAGAGTGTAAACCAGCCGTGGCTGGCAGACTCCTGGCCCAACGCATGTGCCAACCACAAAGACTGCAACATCAACTGCTGCAACAGTGGCAACGGCACCAGTGACAGCAACATGACCACCTACAGCCGCCCAGCCGACTGCATCGCCAACTATGGCAGCCAGCTGGAGAAACAGCAGGGGGTTCTGCTGGGGCCTGAGCAGGCTGTGTACAGCGACGTGGACCTCTCCAACAAACTTAACGAGCTCAAGACTTTCAACAACCCCAGCCTGTGCTATGTGGGCCCAGGGGGAGGGCCGCCCACCCCCTACGAGCCCACCCCCTATGCCACCACCCAGCTCATCCAGTCCAGCATCCTGAACAAGGCTGCAGCAGCTGGGGCCGGGGCCCCTGACATCCGCTGTTGGAACCAGCCCCCCTCCCACCTGCAGAAAACACAGATGCAGTACAACATCATGGAGCAGAACAACAGACTTAATAAAGACCACTATAGAGGAGATGGGCCTCTGCAAGGCACCGTCCCCTATAACCAGGCCCACGAACACAGCACAGGAGGCTCCCACCACAGTTCTGACAGGGGCAGCAGCAGTACCTCTGGGAGCCAAAGTCATAAGAAGGGAACTCGCACTCCCAAACTTCCCAAAACTAACACAGTGAACTGGGGTGAACCTCTGCCCCCTCCCCCTGCCAACCCCCCACCAAGCCGGAGCTGTGATGAGTATACCCTGCCCATGGAAAAAAGCTTTAACCCAGATGCCCCGTGCCCAATGCTTACCTCACGGATGTACCTGCATCCGgatgagatggaggaggaagagcaggaggcGGCGGAGGGGATGGATAGGTGTCCCACCCCCCCTGTTAGGGGGGCAGCCTCTTCCCCTGCGGGTATGTCCTACAGTCACCAGTCTACAGCcactctcaccccctccccccagggAGATCAGCCCATTGTCCTACACAACGGAACAGACCACCACAGACAACACGCAGCCAGCCCACCTCCTCCCCcacaccccctctcccccccacacacctaCGGCTACATCTCCAGCCCCCTGGCACTGGACACTGACggtcaggaggaagaggaggaggatgaagaagaggaagGGGATGAGACGGATGCGGAGATGGCCCAGGGTCACTATCACCAGCACCAAAATAACCCCCAGCCCCACCAGAAACAGccccaccaccagcaccaccctCCCCCACGCAGGCTGCACCTCCGAGGGTTGGAGCAGACGCCGGCCTCCAGCACTGGGGACCTGGAGAGCTCTGTGACGGGCTCCATGATCAACGGCTGGGGCTCGGCCTCCGAGGAGGACAATGGCTCGTCAGGACGCTCCAGTGCTGTCAGCTCCTCGGACGGATCCTTCTTCACAGACGCAGACTTCGCCCAGGCTGTGGCCAACACTGGAGACTACACAGCAGGCCTACGCATGGCCAGGTTCCCAGAGGACACAGGGCCAGCAGGGCGAAGGAGCCAGCGTCCCAGCAGCCCCCTGTCCACAGACAGCAACATGAGCTCTGCAGTGATGCAGAAGAGACCGCCCAAGAGGCACAAGCAGCACCAGGCCCAGGCTGGCCACCAGCAGAGGAACGACTTCACTGACGACTCGTGTATGCCCTTGAAGTCTCCTAGTCACATGTCGCGGTGTGGCTATGAGGTGAGGGGGGCCACACTCCCTAGGATTGGCTCTGGGGAGGGACGGGGCCGGAGAGGGAGTGCAGGAGGCCAGAGGACCAGAGAGGGCTCTGTGGAGAGACGGGAGGCGCAGGACAAGAACAGGACTCCACAGGGAGGCAAAGGGAGCAACAAAGGTCGTCAACACCCAGgttCTGAAGACATCCTCCCATACAGCAGGCCCTCGTTCCCCTCGGTGCAGGGCCAGAGCCAGGGTCAGAGCTCCTCCAGCTCCATGTCCTCCCGGGGCTCAGGGGGACGGAGGAGAGATGGGGCCCGCAGGAACCCCACAGACACACTGCCCAGCATCGCAGGCTTCCAGACCCAGGAAGAGGAACTAGAGCTGCTGGAGAGCTGAGGATCATGGGAGGAGGACAGGAAACTCCCACAGTGCCCTCACAGGAAGGCTTGAATCTGACATCAGTGACTATTATGTCAATTACTTTTCTTATCATACAGaataaggggggaaaaaaacgtaACAATACTTATTATTAGTTTTTCTTTTGACCATTTCTCATTTGATGCCATTTTGGAGGGAAAAAgaaagtgtgagtgtgagtgtgatcACGTTTCAGTCTGTGCACCCACTGGTACGAAGCACTATTAGATCATTGTTTACATGAGTTGTTGGTTGAGAACTGGCCTCTATGGTGAGCTAGTGACTAATATGAAAGTACATGCACATTAGATGACTGTTGTATACAGATACCTTGTCTTGGACCACCTTCTGTGGTGCCCCAGACTGGTCTTGGAATGTCTGTTGCGcctgttatattactgtaattaATATTTGGACTTCACCATCCATCTTGTAAATTGTTCCGTCATTTTGCTGCCACAAAAATTGCTACAATGggatttttacattttgttttcaatGTATTTTTGTAATGCACTGTTACTGTTTTGTTATTGATGTTGGTCTTGTCAATGTGCGTTATTTGTTCTACTTTGGTTTCAAAAGCACAATCACTTAACTTTATTTTAAACCATTTGGTGTCTATGACGTTCCGTCTTGAGGAAcaatgattaaaaaaataatgttgtCAATCGTATTCTGTATACGATTGGACGAGTGTTATGTGTCTTAATATTCTGTTTCTGTTGGGATTGGGATGGAAACGAGACTCCTCTGTCTAGCTTAGGTTTAATTGAAACCAGAGTGATCATTTGGACTGAAGGGGACACTGCCCAAAGCAGTGACCGCATTTATCCATTTATTATGACACAAACTACTGTGTTGGTCGGATTATACCCTCATGTCTACAAATGCACTTatgaggaagtgagagagacCGTTTGACAACCTGAGGCACACATTGCACCAATAGAGAAGGGTGAGGAAGCCTCATTTCTCTTAGTAGTAGTCTTCTTTCCAGATAAGTTAAGAGTGGAAATGTTGACGGATCCATCCTGGAAAATGGACTTCTCCGTGCCTGGTGATGGGTGGCATTTTGTCCATGAGCAAgcaacacacagtgacacatccatCGTTGTTTCCCAGCAAGACAGGGTTGAAGGAAGTGAAATGAATGCTGACTCAAAAGAAGGACTAAAGAAGAAGACTTGAGAATCCTGCAGCTTGGAGATGGAACAGCGTGTTGTTGTTGGGTTTAGGTTCTTAATGGCCACATCAAGGCCAAGCTTTGAGTCCATTTCTTTACTTCCTACACATGTACAAAATGTGTGAAACGATGTTCACTGAGGGCGCCTGACATTTGTTTGGAGTTTGTTTTAAAGAATTACACTACTATGTTCATGATGTCAGCCATGGCATTTCATTTCATTACTGGGTATGTTTAAAACGggatagaaagaaaaaaaacattgtcattttaccacattatttattattaaAATGTCTTCAAATGCCAAATGCAACGTTTGAGATCTCTTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011191 lncRNA upstream 87307 40942155 ~ 40942424 (+) True G888821
TU1011169 lncRNA upstream 119750 40908751 ~ 40909981 (+) True LOC110533885
TU1011149 lncRNA upstream 197244 40832221 ~ 40832487 (+) True G888789
TU1011138 lncRNA upstream 219240 40810096 ~ 40810491 (+) True G888779
TU1011114 lncRNA upstream 250896 40778555 ~ 40778835 (+) True G888755
TU1012232 lncRNA downstream 394104 41634232 ~ 41634439 (+) True G889805
TU1012252 lncRNA downstream 411040 41651168 ~ 41651372 (+) True G889825
TU1012280 lncRNA downstream 431550 41671678 ~ 41672001 (+) True G889853
TU1012294 lncRNA downstream 440415 41680543 ~ 41680866 (+) True G889867
TU1012300 lncRNA downstream 445292 41685420 ~ 41686086 (+) True G889873
XM_021618465.2 mRNA upstream 92416 40920569 ~ 40937315 (+) False LOC110533887
XM_021618467.2 mRNA upstream 92416 40920569 ~ 40937315 (+) False LOC110533887
XM_021618468.2 mRNA upstream 92416 40920569 ~ 40937315 (+) False LOC110533887
XM_021618469.2 mRNA upstream 92416 40920569 ~ 40937315 (+) False LOC110533887
XM_021618466.2 mRNA upstream 92416 40920600 ~ 40937315 (+) True LOC110533887
XR_005053664.1 mRNA downstream 161362 41401490 ~ 41404142 (+) True LOC118966775
XM_021618482.2 mRNA downstream 714079 41954207 ~ 41966800 (+) True LOC110533893
XM_036990294.1 mRNA downstream 739157 41979285 ~ 41984408 (+) False LOC110533894
XM_021618484.2 mRNA downstream 739268 41979396 ~ 41984408 (+) False LOC110533894
XM_021618483.2 mRNA downstream 739269 41979397 ~ 41985398 (+) False LOC110533894
TU1008492 other upstream 2217592 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 4178578 36849646 ~ 36851153 (+) True G883966
TU1005835 other upstream 4228146 36799385 ~ 36801585 (+) True LOC110533788
TU1005301 other upstream 4734184 36293314 ~ 36295547 (+) False G883473
TU1004434 other upstream 5343158 35682655 ~ 35686573 (+) True LOC110533748
TU1012334 other downstream 472199 41712327 ~ 41717292 (+) False G889906
TU1012335 other downstream 472199 41712327 ~ 41717292 (+) False G889906
TU1012336 other downstream 472199 41712327 ~ 41717292 (+) True G889906
TU1012699 other downstream 838087 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 1742554 42982682 ~ 43109676 (+) True G891133

Expression Profile