RNA id: XM_021618478.2


Basic Information

Item Value
RNA id XM_021618478.2
length 6281
RNA type mRNA
GC content 0.55
exon number 28
gene id LOC110533890
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41256824 ~ 41441750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAGCTGTAACTGCAGCTATTCATTCACCTCGGGTCTGGAACCACCACTGTTGGCTCACAACAGTGTAAAGATATAACAGCGCACATTCATTCGAAGTTATATTTAAAATCATGGTCATTCTGACTATTTCTAATCTATATTGAGTGTTTGCTTCGCTTTGGACACTTTTAGCTGGACGGAACATTGCATGAAATAGGCTCTGGGAGGTCGGGGCGATGTTATGAGACGAGCACATCGTTGCTCTGCGCGGTTGGTGTCTGCTTGGTGAGACACCCAGCTATAAACATTATGTATGGAGAAGTAGGCTGCCCATCCGGTGCGCTCTTTGAGAGAAAACATGAAGTCGTCTCGTGAATGATTTCGTTGTACACTTCACGATAAACAACTGTATTAAAAGTCCATATTTCATGTTCAAAGAACCAAAACTATTGAGAGTCGGACAATCTGCAAGATAAAGAAGTCTATCGGACAAATCTGTGTGCAGATAAACCGTGGACGGTTACTACAGTATGCCAGAATGGGTCTACTACGGTTTTTATTTTTCTGTGGACTATTGCACACCCAAATCAACGgATCTCGTCTTCGTCAGGATGACTCCCCTCCCCGGATAGTGGAGCACCCCTCTGACCTCATTGTGTCCAAGGGGGAGCCAGCCACCCTCAACTGCAAGGCGGAGGGGCGTCCTGCCCCCACGGTGGAGTGGTACAAGGACGGGGAGCGTGTGGAGACAGACCGGGACAACCCCCGTTCCCACCGCATGCTGCTGCCCAGCGGCTCCCTCTTCTTCCTACGTATCGTCCACGGCCGACGCAGCAAGCCAGACGACGGCAGCTACGTGTGTGTGGCCCGTAACTACCTGGGGGAGGCAGTGAGCAGAAACGCATCATTAGAAGTAGCATtGTTGCGTGACGACTTCAGACAGAACCCCCaggacatggtggtggcagtgggGGAGCCTGCCACCCTGGAGTGCCAGCCTCCTCGTGGGCACCCTGAGCCCACCACCTTCTGGAGAAAAGACAAGTCCCGTCTGGACCTCAAAGGTGACAGGGTCACGgTACGCGGAGGGAAGTTGACCATCTCCAACACCAGGAAGAGTGATGCagggatgtatgtgtgtgtggccaccaacatggtgggggagagagacagtgagacggCTCAGCTCTCTGTGTTCGAGAGACCCACGTTTGTCCGTCGGCCGGTGAACCAGGTGGTCCTGGTGGAGGAGAGTGTGGAACTCAGGTGTCAGGTACAGGGAGACCCACCTCCCTCATTACGCTGGAGGAAGGACGACGTGGATATACCCCGTGGCAGgtATGACATCCGATATGAGAAGGAGGATTTTCTCCTGAGAATCAAGAAGGCGTCGGCCGGGGACCAGGGAACCTTCACCTGCGTGGCCGAGAACCGTGTGGGCAAAGTGGAGGCCTCGGCTACTCTCACTGTCAGGGCTCGTCCTGTTGAGGCTCCCCAGTTTGTGGTGCGACCCCGGGACCAGATCGTGGCTCAGGGGCGCACAGCCACCTTCCCCTGTGAGACCAAGGGCAACCCCCAACCCACTGTGTTCTGGCAACGAGAGGGCAGCCAGGATCTGCTGTTCCCAAGCCAGCCAGCCCAGGGAGACAGCCGTGTGTCAGTGTCAGTCAGTGGAGAGCTGACCATCTCCTGTGTACAGCGCTCTGATGCAGGCTACTACACCTGCCAGGCCCTCACTGTGGCCGGCAGCATCCTGGCCAAGGCTCAGCTGGAGGTGGCAGACGCCTCGAAAGACCGACCCCCGCCTATCATCCGGCAGGGCCCATCCAACCAGACGCAGGCTGTGGGGGGTGTGGCCCTGCTGAGGTGCCAGGCGTCAGGGGACCCGGAACCCACCGTCACCTGGCTTAAGGACGGCCTCAGTCTGCTGGGGAAGGATCCTCGCATGGCCCTGCTGGAGCCTGGCAGCCTGCAGATCCAGAGCACTAGGCTGTCTGACTCTGGGCTGTACACCTGTGTTGCCACCAGCTCAAGTGGGGAGACCTCATGGAGTGCCTTCCTGGATGTTAGAGaGTCCAGTGACCTCATAGACTCTATGTCCCACAATGCCAGTGCCCTCCCAGGGCCTCCGTCTAAGCCAGAGGTCACTGATGTCACCAAGAGCAGTGTCTCGTTGTCATGGGAACCTGGGCCTGAGGAGGGCTCACCGGTCACTTCCTACGTCATCGAGGCCTTTGGTCAGCTGGTCAGCAACAGCTGGCAGACTGTGGCTGACCACGTGAAGACCATACAGTTCACGGTCAAAGACCTGCGACCGAACACGGTCTACCTGTTCCTCATCAGAGCGGTCAATGCCCAGGGTCTCGGAGACCCCAGCCCCATGTCTGAGCCTGTCCGCACACAAGacatcaGTCCTCCAGTGCAGGGTGTTGACCATCGTCGTGTCCAGAAGGAGCTGGGTGATGTAGTGGCCAGCATGCATAACCCTGTGGTCATCAGCTCTACCTCTGTCCAGGTCACATGGACCGTGGAGAACCCTTCCCAGTTTATCCAGGGCTATCGTGTTCTGTACAGGCAGACGTCAGGTCTGCCCTCCCCTGGGGCCTGGCAGGTGCAGGACCTCAAGGTTCCGTCTGAGAGAGACGTGGCGCTGTCTGCGCTGAAGAAGGGCGTTGTCTATGAGATAAAAGTCCGTCCGTACTTCAACGAGTTCCAGGGAGCAGACAGTGAATCAATGACAGCACGCACCTTGGAGGAAGCGCCTAGCGCTCCTCCTCAGCAGGTGACAGTGCTGACAGTGGGGAACCATAACAGCACCTCTATCAGCGTGTCCTGGGACCCCCCTCCCGCAGAGCACCAGAACGGCATCATCCAGGAGTACAAGatctGGTGCCTGGCGAACGAGACACGTTTCCATGTGAATAAGACGGTGGATGCGGCCATCCGTTCCGTGGTGGTGGCGGGTCTGCAGGCGGGGGTGCAGTACCGTGTGGAGGTGGCGGCAGGCACCAGCACCGGAGTGGGGGTGAAGAGCGAGCCCCAGCCCATCGtcatagGTGCAGAGCTGCGTGATGTGATCACGGGGGCGGAGGGCAACAACAGCATCTCAGACGTGGTGAAACAGCCGGCCTTCATCGCTGGGCTGGGAGGGGCCTGCTGGATCGTCCTCATGGGCTTCAGCGCCTGGCTCTactggaggaggaagaagaggaagggcCTCAGCAACTACGCAGTTCAGTCCTTCACCTTTACCCGTGCAGTGACGTTTCAACGAGACAGAGGACTGATTGAAAATGGAAGTCGTCCTGGTCTACTGAAAGCCGGTGACCCAGGATTCCCCTGGTTGGCTGACTCCTGGCCCTCCACCAGCCTGCCGGCCAACGGGGGCCTGGGAGGTCCCAAGGACCGGGATAACTTTGGTCGTGGAGATGTGCTACCCTCCGGAGTGGGTGAGAAGACGGGTACCATGCTGTCTGACGGCGCCATCTACAGCAGCATAGACTTCACAGGCAAAGCTGGTTACAGCAGCCCAGCACGGGGCTTACAGGCCACACCCTACGCCACCACCCAGATCCTGCAGTCCAACAGCTTCCATGAGCTGGCTGTGGACAGACCAGACCCCCGCTGGAAGGCTTCCCTTCGAGCCCAGCAGGAGATGGCCAACCTGGGCTACTCACTGACCGATGGACGCCCCTGTAACGgTGGAAAGGGTGGCAAGAAAAAGAAGTCGAAGGGTGGGTCGAAGACCTCCAAATCCAATGGGTCCTGTTGGGTCAACATGCCCCTGCCTCCCCCACCCATGCACCCTCTGCCAGGCACCGAGGTGGACCACTACCCCCTAGAGAACCATGGAGGAGGGTATGACAGTGACAGCTGGGCCCCGCCCCTTCCTGTCCAGACTTACCTTCACCAGGGATTGGACAACGATCTAGAGGAGGAGCGAGTGCCCACCCCGCCCCTCAGGGGAGTGGCCTCTTCCCCGGCAGCAGCTACCTACAGCCAACCGTCATCCTCCTCCCTAAGCTCCACCCACCACGAGGAGATGCAGTCCATGCTGCAGGCCCACCTGGATGAGCTGACCAGAGCCTACCAGTATGAAGTGGCCAAACAGacatgGCATATGAAGGGCAGCCCACACCCGCCCAAGGCGCCTGTCCCTCCGATGGGCTATGTGTCTAGCACGCTGGGGTCTGACCTGGGGACCAACCTCCAGtgtgaggaagaagaggaggatgaaggctACGGAGTGTCACGTCAGCTCTGTGGCTTTGACTACACTGCTGGACTCAGCATGGACAACCTGGAGGGCTCAGGTAAAGGGTACTCCCAGCGGGGTCGGCCAGGTAGCTCAGGCTCCACAGAGAGCAGTGCTCTGGGCACACAGAGCCTCGGTCACCAGAAGGCCACGCACACTGGACGCAAACCCCGGGCAGAAACTGTTGGGACGCTGCCCAGACGGAGAGACACCCCCACAGATgCAGCCTCTCCTGCCCCAGAGCAGGTCAACAGTGTGGGGGCCAGGCTGCATGGTTCATGGGCGGCCGGAGGCTCGGACCCCCCTGAGGAGTGTATGGTCTCCACGCTGGAGCGGCAGCACATGGCCTCCTGGAGCGGCACACCCGCCAACATGGGCACCCTGGGCAGGGCCCGCCACAGGGCTGGGGCTGGCATTGACCACCCACACAACAGCCACAATGGCCACCCGCCTCCCAACAGCACCGAGCAGAACTACGGAGAACGATAGTCTTTGTGATGAGTCGGACCCTCCAGTGCTGCCTGTCTATAAGTGCAATGAGATTTCCTCTCTCCAAATGCTACAGGACGGAGGATGGAGAAATGTCAGGAAGTGGAAAGAGTGTGACGGAAACGCAGAGCTGTAAATGTgatgtacagacacacagacacgtctCACAGTGTTCTTTTTACAGTGTTACTTTCATCCTTCCTTCCAATATAATATTCTGTATGTCACTTGCCCCTCCTGTTTCATGTCACAAAATGTACAGTAAGTCACTCTACATTAATGAAGTAAAATCACTACAGTTAAGCTATTGGCTCATGAAAGTGAAAGGACTTGCATTTCTTTGTAAATAGGTTTTGTATtttcagtttttctcttgttttgCTTCGCTATGCAAGCCAAAATCTGACATTGAAGTTGTCTCTTTTACTTGTAATTTTACATTGTGAGTTGATGGACTTGTGGTGCCACATTCGTTTTTCATAAATGCTTGAAATAATGATTTTATTTTGATGAAACTACTGTATTGTTTACTTTGCACAGAGCGTTGGGTGATAATAAGCACAAAGTCATCAGCTGAGCTGAAAGAAGAATGAAGCGGAGGAGTGTCTATAATAGAACCTAATAGATCATATATGACAGAACATGCTTTTCAGAGACACAGATGTATTGAGAgatataatgtaaaaaaaaaaaaaatggccacATAGAAAACGTTAAGatatgatgttttttttttcttcttgttcAAATCTGCGGTGGTTTGTGAGGATGATCTGGCCAGTGTGCATTGTACTGCTTGGCAGTCTGTTTCCCATACAGTATATTCCCATGACAGTGAGACAGCGGTACTTGGATTCCAAAAATGAGTGACTGTTCAGAATAATCGATAAAAGGTGAAACCGTCTACGTGTAACATTTAAAGCGTAGATGCAAAGGGCAGAGGCAAAGGGCGGCAGCTAGTTGTTGATAGGGAGGTGTTGGGCCAACAGAGCGCCACTCAGGTGTGTGGTCAGGTGGGGACAGCTGTGTGCACAGATGGACTCTGTCAGTGTTGCCCATGGGAACAAAGTGAGATAAAGAGATGTTGGCCTTGAGACGACTAGCTAATCCCAGACTGGGTTTTCATAGCTGTCAGTGACTGGTAAACATGATTAACAACTATATGCAATTAGATTCAAATAATACACCCATCATAGATATGATGGCCGTCTGTTTTAATCCTACTGGTGCAGTATAATGTGGCCCCTATCTACGACCCTGGCAACACACTGGTGACACTCATCAGGGTTAGTGAGGAATAGTGAGCCCCTCGCTTAATCAGCATATCCTCAACGCTGTAACCAGTCACGGAGGGCAGCTGGTTGCTAGCTTCACAATGCAGTGTTTTGATTCACTTCTTTGTTCTTTTCTGGTTGTTCTTTGTATTGGCTTCACCTGTAAAGACTCTGTACCTGCCAGATCCGGTCTGCCCTCAGAAATACTCAGGCACGTACAGTGTGGCCGTTCATTTTTCAACCCTACGATGCAAATAAAACGTGTATGTGGAATCAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1011800 lncRNA downstream 170388 41086084 ~ 41086436 (-) True G889395
TU1011704 lncRNA downstream 314339 40942248 ~ 40942485 (-) True G889300
TU1011613 lncRNA downstream 318455 40937421 ~ 40938369 (-) True G889210
TU1011603 lncRNA downstream 413898 40840140 ~ 40842926 (-) True LOC110533882
TU1011646 lncRNA downstream 426312 40830163 ~ 40830512 (-) True G889243
TU1012230 lncRNA upstream 260385 41632378 ~ 41632587 (-) True G889803
TU1012267 lncRNA upstream 286618 41658611 ~ 41658931 (-) True G889840
TU1012269 lncRNA upstream 289248 41661241 ~ 41661441 (-) True G889842
TU1012296 lncRNA upstream 308551 41680544 ~ 41680773 (-) True G889869
TU1012297 lncRNA upstream 309008 41681001 ~ 41682352 (-) True G889870
XM_036990281.1 mRNA downstream 403344 40840102 ~ 40853480 (-) False LOC110533882
XM_021618457.2 mRNA downstream 404107 40840102 ~ 40852717 (-) False LOC110533882
XM_021618458.2 mRNA downstream 404108 40840102 ~ 40852716 (-) False LOC110533882
XM_021618459.2 mRNA downstream 404108 40843907 ~ 40852716 (-) False LOC110533882
XM_021618460.2 mRNA downstream 404108 40843962 ~ 40852716 (-) False LOC110533882
XM_021617205.2 mRNA upstream 102994 41474987 ~ 41475979 (-) True LOC110533111
XM_021618481.2 mRNA upstream 340318 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA upstream 414990 41786983 ~ 41806880 (-) False LOC110533892
XM_036989349.1 mRNA upstream 632833 42004826 ~ 42011726 (-) False LOC110533896
XR_002475184.2 mRNA upstream 973723 42345716 ~ 42353693 (-) False LOC110534921
TU1010822 other downstream 709457 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 1363121 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 2039086 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 2071330 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 3016265 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 610708 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 615718 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 704748 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 1687017 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 1821689 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile