RNA id: XM_021617205.2



Basic Information


Item Value
RNA id XM_021617205.2
length 993
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC110533111
representative True

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41474987 ~ 41475979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGCGTTCAGTGAAGTGGATGGATATCAAGCAGTACAATACTGTTTTCCTCTCCACAACTCGTCTTGCGTTAAGGAGGAGCGATCCATAGCAGAAAATATACTCATgcaccttttttttttctctgtgtCATCATTCACAGTGTTTGTGAATCTGCTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACGAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTTGGGATTGTTGTGATTCCAGTGGAGGGCATCAAAGTCATCGAGTCATGCTGGTATCTTGGTGAAACAATGTGTTCAGTTTTTCATGGGATTGTTTTCTCTGTCATTTTTGCATCTCTATACAATTTAGTCATCATAGCTGTTGACAGATATGTTGCTGTTTGTGATCCTTTACTCTACATTTCAAAAATAACTATTGGAAAAACAGTGACTTCTATATTCCTAACCTGGATATTTTCTTTTATATATAATCTTGTTATTCTATACTGTAATGGTCAATGGTATCGTTCTCAGGCACACAAGAACTGCCATGGAGAATGTGTGTTGATTATCAGTTTTACATGGGGAATTATTGACCTTTTTGTCTCCTTTGTTGCACCttgttctgttattatatgcttATACATGAACATTTTCAAAGTGGCAAGAATTCAAGTAAAAGTGATGAATATCACAACCAGGATCAAGATGTCAGAGAGTAAGGCAACCAAAACACTGGGGGTTGTGTTATCGGTGTTCCTCGTCGGTTGGATCACATATTACGTTGGTTCACTTTCTGAGGACTACCTGGCACATTCAGATGTCATCATAGCATTTCTCTCCTGGGTTGTGTACATTAATTCATTCCTTAACCCTCTGATCTATGCATTGTTTTACCCATGGTTCAAAACAGCAGTAAGACACATCTTAACCTTACATATCCTGGCACCCTCATCCTCCTTAATAAATCTCTTTCCAGAAAATtgttag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1011800 lncRNA downstream 388551 41086084 ~ 41086436 (-) True G889395
TU1011704 lncRNA downstream 532502 40942248 ~ 40942485 (-) True G889300
TU1011613 lncRNA downstream 536618 40937421 ~ 40938369 (-) True G889210
TU1011603 lncRNA downstream 632061 40840140 ~ 40842926 (-) True LOC110533882
TU1011646 lncRNA downstream 644475 40830163 ~ 40830512 (-) True G889243
TU1012230 lncRNA upstream 156399 41632378 ~ 41632587 (-) True G889803
TU1012267 lncRNA upstream 182632 41658611 ~ 41658931 (-) True G889840
TU1012269 lncRNA upstream 185262 41661241 ~ 41661441 (-) True G889842
TU1012296 lncRNA upstream 204565 41680544 ~ 41680773 (-) True G889869
TU1012297 lncRNA upstream 205022 41681001 ~ 41682352 (-) True G889870
XM_021618473.2 mRNA downstream 33237 41256824 ~ 41441750 (-) False LOC110533890
XM_021618474.2 mRNA downstream 33237 41256824 ~ 41441750 (-) False LOC110533890
XM_021618476.2 mRNA downstream 33237 41256824 ~ 41441750 (-) False LOC110533890
XM_021618477.2 mRNA downstream 33237 41256824 ~ 41441750 (-) True LOC110533890
XM_021618475.2 mRNA downstream 33238 41256824 ~ 41441749 (-) False LOC110533890
XM_021618481.2 mRNA upstream 236332 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA upstream 311004 41786983 ~ 41806880 (-) False LOC110533892
XM_036989349.1 mRNA upstream 528847 42004826 ~ 42011726 (-) False LOC110533896
XR_002475184.2 mRNA upstream 869737 42345716 ~ 42353693 (-) False LOC110534921
XM_036990356.1 mRNA upstream 1068632 42544611 ~ 42553273 (-) True LOC118966777
TU1010822 other downstream 927620 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 1581284 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 2257249 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 2289493 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 3234428 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 506722 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 511732 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 600762 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 1583031 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 1717703 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile