RNA id: XM_021618481.2


Basic Information

Item Value
RNA id XM_021618481.2
length 8879
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110533892
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41712311 ~ 41806880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCGGTCTGGAGAGCAGAGCAAGTGCTGAAAAATTATCCTCACTTGATTTCTCATAACAAATACGTGCTTCGTTTACTCTACGCGGTGACATATTCCGTTTTGTGATTAAGACACGTGTGacattttaaatacttttttaaaaTATCGTTCAATCTGTATTTCGTGGTGTGTGGGTTTTATGCACGACATTCGCAAAGCTTGAGAAACTTGGACTAAAGGGATAGATAGATAGGTTGAAGATGAGTGCATATCTTCGCTAAGGTGCAGTTGCAACAGGATTTGAGAGTAGAGAAAAGCAATTGAACGTCGTGGCCAGAAGCATAGAGTTCATAACTACTGGTTATTAGCTGTAAAAACGAAATGAATTAATTCAAGCTTGATTTGTGTTATTTTTCGTGGTCAGAAAAATAGCGTTTTTTTGACAGCGGTAGAATGGAAGGCTGCACAATGACATGGGAATGGATTCATCGAATTTGAGGGTAAAGTTATCAATGGTACTAATGGATTTGCTCTCAACTGGTGATTTTTTTCGTCGTCGTGATACAGTATTTGGATTGAGTCATTGATACTGAGGTTTGAGGGTTATATACCTGCCTCTGGGACGACAGAAGGAAAAAACCCCGAGACAATCGCACCCTAAGAAGTCTTTGGCAAAGGTAATCTGGTGACGGACTTCATGGAACTGCACTTGGGAGCAGTTCTGTTGTGGGTCCTGGTGTTGGACTGCTGTGGTTGGGCTGAGGCTGGTATCCTCTACCGGGTCCAGGAGGAGCAGCCCCCCAGCACGCTGATTGGCAGCCTGGCATCAGACCAGGGCCTGCCAGACTCTGGTCACTTGTACAAGCTGGAGGTGGGCTCTCCGTACCTGCGAGTGGATGGGAAGACAGGGGACATCTTCACCACAGAGATCCCCATAGACAGGGAGACACTGAGGGACTGCCGCAGTATTGTCAGGGGCAAGCCCTGCTTCCTGGAGTTTGAAGTGTCCGTCACAGACCTAATCCACAACCAGAGCCCCAGGCTCATTGAGGGCCGCATCGAGGTCCAGGACATCAACGACAACACGCCGCAGTTTCCCTCCCCCGTGCTCACCATCTCTGTCCCAGAAAACACCCACTTGGGAGCTCTGTTCTCCATTCCCCTGGCCACAGACAGGGACTCGGAGAGGAATGGGGTGGCCGACTACGCCCTCACAGCTGGGCCAGACGCGGTGACGCTCTTCGGCCTGCAGGTGGCGGAAGACAGGGGGGAGAAGCTGCCCCAGCTCATCGTCCTGGGCAGTCTGGACCGGGAGCTCAAGGACTCGTACGACCTAACAATCAAAGCTGTGGATGGAGGTAACCCCCAGCGCTATAGCAGTGCCTTGCTGAGAGTGGTGGTTGCTGATGCTAACGACAATGCTCCGAAGTTTGAGAAGGCCACGTATGAGGCAGAGGTTTCAGAAAACAGCCCTGTGGGACACTCTGTTTTGCAGGTGAAAGCCAATGACTCTGACATGGGCCCCAATGGAGAGATAGAATACACACTACACCAGGCATTAGACCCAGTGCCAAAACTCCTGCGAATTGATCGCTCCACTGGCATCATCTATGTCAAAGGGCCCTTGGATCGGGAAGAAATCAGCGATTTGACATTCTACGTAGTGGCCAGGGACAAAGGTCCCCAACCCAAAAGCTCCAAGACCTTTGTGACAATCCAGGTGACTGACCAGAATGACAATTCCCCTGCTGTGGAGATCCGTGGGATCGGCCTGGTGACCCACAGTGACGGGGTGGCCAACATATCAGAGGACATGCCAGTGGGCACGGCGGTGGCCCTTGTCCAGGTGTCTGACAGGGATGAGGGGGAGAATGCAGTGGTCACCTGTGTGGTGGCGGGGGACGTGCCGTTCCAGCTGCGCCCGGCTAGTGACTCGTCCACTAACAAGAGGAAGTATTTTCTGCAGACTACAACCCCCTTGGACTATGAGAGGGTCAGGGAATACCGTGTGGAGATTGTGGCTGTTGACTCTGGCAACCCAGCTCTTTCTAGTACTAACTCATTGAAGGTGCAGGTGACTGATGTTAATGACAACTCCCCAGTGTTTTCCCCAAACCTGTTTGAGGTTGCCTTTGCAGAGGAGAACCAGCCAGGGGACAAGGTTGTGGACGTGGTTGCCACGGATGCTGATAGCGGAACTAACGCCGAGCTGGTCTACAGCATCGTAGCAGACACATCTACCAGGGGCCTGTTTGAGATTGACCCCGATTCAGGGGAGGTGAGGGCACGGAGCTCACTGGACAGAGAGCATAAAGAACGCTATGAGTTCCGGGTCACTGCGTCTGATAAAGGTTCTCCCAGTCACAGAGGAACAGCCACGGTTGTGGTCAAGGTGCTGGACCGcaatgacaatgaccccaagttcATGCTAAGTGGCTACAGCTTCTCTGTTCTGGAGAACATGCCCCCACTCAGCGCCGTTGGCATGGTGACTGTGCTGGACATGGACCAGGGAGAGAACGCCAGAGTGCAGCTCTCTGTGGAGCCAGACGGAGGGAAGTTTGTGATTCAGAATGGAACAGGAACCATCCTGTCCAGCATCTCCTTTGACCGGGAGAAGGAGAGCAGCTACACCTTCCGTCTGAAGGCCGTAGACGGGGGAGAGCCTCCCAGGTCCTCCTATGTAGGCGTTACCATCAATGTCCTGGATGAAAACGACAATGATCCTGTGGTCACCAAGCCCTCCAACTCCTCCTTCAGACTCCTGTCCCCTCTAGCTGCCCCAGAAAGCCGTGTGGAGCTAGTGGAGGCTGAAGACCTGGACACTGGGCCCAATGCAGAGCTGGTCTTCAGCATCACTGGAGGAAACCCTTATGACCTCTTCAGCATCTCCTCCACTACTGGGGAGATCACCCTGGCCAAGGAGCTGACCCGGAAACATGGTGGGCTCCATCGCCTGGTGGTGAGGGTGAGTGATGTGGGCAAACCCGCACGCCACGCCACTGCCATGGTACACATCTACGTCAATGAGACCATTGCTAATGTCAGCCTAGTGGAAGCACTGGTGGGACACAGTCTCTACACCCCTCTGGAGACAGACATTGCTGGTGACCCTGACTACGGCCTGGCGGCCCAGCGCAGTAACATTGTGTACGGAAGCCTGGCGGGAGTGGCGGGCGTTGTCATGGTGATCGTAGTGGTGGTGTTTATCCGCCACCGCATTCAGCGGGAGACGAAGAGCGGCTACCAGGCTGGCAAGAAGGAGACCAAGGACCTTTACGCCCCTAAGCAGGGGCCAAAGAATGGCAAAGGCAAGAGGGGAAGGAAAGGAAAGCCCTCCAAGTCCCCCAAGCCcttgggagaggaggaggaggtcagtCTCCAGAAGAGTCTCAAGTTCAACCTGGATGGGGTCAACGACAGCCCCAGGATCCACCTGCCACTGACATACCCCCCAGGCAGCCCTGACCTTGGCAGACACTACCGCTCCAACTCTCCCCTACCATCCATCCAGCTGCAGGCCCAGTCTCCGTCGGCCTCCCAGAAGCACCAGGCAGTCCAGGACCTCCCTGCAACCAACACCTTCGTAGGGACTGGAGGAGATGACAATTCAACAGGCTCAGACCAGTACTCGGATTATAGCTACAAGGCCAGCCAGCCAAAGTACAACAGCAAGCAGCTCCCCCATCGCAGAGTGACATTCTCCACAGCCAATCCGGTGCAGGATCTGCAGGATGCATCTCAGCACAGTTACTATGACAGTGGCCTGGAGGAATCCGAAACGCCCAGCAGTAAGTCATCATCAGGCCCCCGCATCGGCCCACTGACCCTGCCTGAGGACCACTACGAGAGGACCACCCCGGATGGCAGCATCGGGGAAATGGAGCACCCTGAAAACGATATGCGATCCATTCCTGATGTGGCAATGACGGGGAACTGTACTCAAGAGTGCAGCGAGCTGGGCCACTCTGACGCCTGCTGGATGCCTGGGCAGCCCTCCCCAGTGCGCAAGACCAGAAACCCCCCTAAACTCTCCACCTTCGTGCCTTACCAGGAGAGAGGCAGCCTGGGCCGCTTGGCCAACGGGAGCGCCAGGCTGGGTGGAGAGGAGCACCGAGCCCACCTTCCACCTTCCCGGAGTGCCTATTCCAACAGCGGCCACGCCCCAAGTCAGGACTTTCCCCTGGAGGAGGTGCCCCTGAGCGTGGCCACCGAGTTCCCGTCCACCTCCCCTCCTAGCCACACCCCCAAACGAGAGATCTACCTGTGAGAAAGCCCCATCTCCCATGTCTGATTGGTGCACAGATAGAGGAGCCACAGAGACACACCCACTTTATAAAAAGAAACATGCTCTTATGCTGCATTCATAACAAAGTGGGAAGGTGGTAATTACCTCATAAGATTGGTAAAAATCGTCTTGAACGCCCCTccactggtaattactagtgggaaacacATCTATCATCCCTAAACTCCGACTTCTCCCACATGCTCACCTCTGTCACTTACTAAGGAAATTACCTTGATAACAGCATTTTcggcagttaaatgcaacaacaCAATAGTATTTATAAAAAGCAATCTATTCATATGGTTTTTTaacactatagtttgtttacacgCATGATAGCTGTACTTTGAGTTTATGGTTGAAGCAGCTTGTTGGCCTTTAGCCAATCTGCATTTTTCAAAAGATTTAAAGCatgtgaatgcatccaactggtatttacaACTTCACAACTGGTAATTAGCACCTTCCCATTTGGTTAAGAACTCAGCATGAGGCTCtgaaatgtccatttatttgaatAAATATCCGTTCTGTAGGAAATATGGTCTGTAATTCGTGGAACCATTGGTATGTGCAATAGGAGTTTTTcagttaatttattttatttatttacatatttattGGTTCAATAATGTATTAATTAGTTAATGTATTCATTTATTGATGCAGCTTATTTGAAAGCATTGGTTGAACACTTGTGGTAAtatcacacaaaaaaatatacaatCAATCCCTCAAACGCTACTGATTTACTTAGCTTAGCCCCAGCCTGTGGAATGTTCTCTGGAACTTTTAATGTGTGATCAGTGCTTTAGTGCCATAACCAGATAACATTCAACTGACAGGCAATACATCCCTAGGGTAGACTTAATGCTTTTGATTACAAATCAAATTGAATGGTCTTTCTTAATGTACAGTgctgtaaatacatttgaatggTGTACACTGTATCCTGTATATATTTCTGTCTGGCTCAAGCTGATAACAATAGCCTCAGAATTTTTTGCAGTTGAGCTTTTCTTTCATTTGAGCTGCTGCTGTTTAAAACTTGATTGAAATGTTTCCCTAAAGCTTGGACGGACTGTGTGGAAAAGCTCTTGATTGAATTCTACACATACACACCCGTGACCCCCAATCATGATAGAACCATGGCCTTGTACCTCATGCTCTCTGGAGAGCTCTTCAGCCAGTGAAGAGAGCTGTGTGGCAGCATTTAATCGGACAATGTGTGTTCCACTGAGTCTCAGCACTGTGACTTGTCTCTTTTCCTGGAAACAGTACACTTAGAGGCCACCGCACCTGGTCGCACTGACCATTCCCAATCCTTTCCCAATCCTTTATCCAATCCTTAATACTTTAGTTCCTTTAGAACCTGTGGTTCTCCACCTAGATGAGACTATAGTCTCTGTCATGTGTGAAAAGCTCCTCTCCAATGCTAGGCCTCCCTATGCCGAAACAACACTATGCTAATCAGTGGCTCTCCACGTAGAGGTCACCATTAACTTCAACCCTGTGTCTCCAGCCTCGTTAGGGTTTCTCTTCACGATCCGCATGAATTTCAATGGTTCTGATGAATGCATGAGGAGTTATTCACACGAGTTTCAACATAGAAATCTTCAGTCCTGAGAACCACTGAAGTGACTGAGAGTGCTGTGACTGAACTCCCCTGTCTCACAGAAACTAAGCTTTTTACATTCCCAGGCTGACTCCTGAACGGCTTCAGTAATCTGGGACTAAGAGACatttcaatttgcaaagaagGGAAGCGGTTGTCAATGCCTTAGAAAACACTCTGGTCACCATTTTGTTTGAATAGACCTGTTGCATCCATTGGTGCATGTTATAAACAATGGTGAAATGGTGCCATTTCAAATAAAGTTAAATATTGGTAGCAGGAGTGTATTTACTGTCCCATATTTCCAGTCCATTTCCAGTTGACTTTCATTGAGGCCAACAGGTTATATTAGCTTGTTAGCTGTTGTTCCTCACTCTTCAATTGAGTATGATGTAGATAGAGGACATTCCTGTAGGCTGCAGCAGCTATTTTTTACAAATACACAATTTCAAAGTCATTTAAAATCAGACGTCTGGAGGACACAGGAATGTTAGTATGTAATTGGATGATGATTATGCCACCAGCCCGCCTCGCAGCACAGTAGCATTACTCATAGCTTTTTGATTTGTACACTGATTCAATTAGATTTGTACCTTAGTTTTGACCTCAGTGTATTTCTATAGAGAGAGAAACCGTGGGTATGGTCTGAGTAAGGGTGGAAGGGCCTAGAATTGATGCTCCGCTCCCCTAATTACTGTGAGTAATGAGTCCTGAGCCAGGGCATATGTGAGCACTGAGCACACACCCTGAGGACAGCACAGCAGCCAGATAATCCAAATCCATCCGCAAAATCAGTTAAAAAGGGGTATTTTTATCTGCACTTACCTCATCGCACTGCCGTCGGCAGCACATGTAGAATAATTAAACTCAGAACATATGGAATTTACTGGACATGGCAATGACTAAATAAGGTGGGTGATTATCCTAGCCTTGAGGGAAAAATTCACATTATGCTGTTTTCAAAGCCATTCCTTTACGACATAAAAAAACGGAGAAAAAAATCCCATGTGGAAAAAAACGTGCTTTCGGACACGTGTGATTAAGTCACATACAAAATGTAGATGCGAAGCTGCAACttgtacatgtttttattttgcaAGGGTTTAGCCGCTGAAATAAAATACAGCGAGTCATGATACACTGTGATGAAGCCCCTTCGCGGCCCCCCCAACCCCTTCTCAGTGTGGAACAGAGCAGCTTTACAGAGCTACAGCTGCGGGTGAGTTCACTGACCTGGAATTAATGATAAGTGTGAAAGATGGCGATGAGTGATAAAGCCAACGTCACACAGACTCAATCACTGGCTTTGGCTCCTTACGCTATGTCTGACTCCTTTCAGATTCACTGGCGTTGACTCGTCTGACTTACTGCGATTCACCGACTCCTCTGACTCGAGCCTGAATCCCCTGAGTGATCTGGCATGAATCACCAGTTTTATCTCTTTACTAATGAGAGTCTGAATCACTTCTCTCTGGCTTGACTGAATCACCAGTTATATCTCTTTACTAATGAGAGTCTGAATCACTTCTCTCTGGCTGGACTGAATCACCAGTTTTATCTCTTTACTAATGAGAGTCTGAATCACTTCTCTCTGGCTGGACTGAATCACTGGTTTTATCTCTTTACTAATGAGAGTCTGAATCACTTCTCTCTGGCTTGACTGAATCACTGGTTTTATCTCTTTACTAATGAGAGTCTGAATCACTTCTCTCTGGCTGGACTGAATCACTGGTTTTATCTCTTTACTAATGAGAGTCTGAATCACTTCTCTCTGGCTTGACTGAATCACTGGTTTTGACTCAAGACCATATTAAAACCAAACCACTGAGTTTGAGTCCTTACCACCGGTCTTTGCATccgttttcttgttttttttcccaGCCTGAATAACTGTGCTCTACTCCTTTTCTCCAGCCTATATCAATTGTTCTGAGTCGTTGAATATACTGAATCACATGGTTTTACCTGTCGTTTGAACTCATGCTGAATTTATTATTTGCGTCGACTGCTCTCTAGAGAAAGCAGGGTTGTTGTCCTTTATCAAAGTAGAGGACAGCATGAAAACCTTTTGATACACTCCACGGTATGTCCAGTCCTGTTTAGTTTTGTATTTTTGATATTTTATTTCATGTGAAGTTCACCTGAGTATCCTCTGCCTCTCTGTAGTGGTATTATATGGTGATTGTGGCTATAGATTGTTGGGACATTATGGAACACTGGAGAATGGGCAAAGGATTTTTCTTGCAGGTGTTACATAAGACTAAGCCTCCTGACATAGTAAATCAAAGTGAGCTGTATGTGGCAAATCTCTCCTGAAGGTGAACTGTACATATGTAGATCTACACGTCCCCGTGTGTGCTGTCAGGCAGGCTATGAGTTTAGCATGAATTCCAAAGATAATTGGTAGAAATTGTTTACTGTTTTTGCTGGGGTGTTAGTGCTGGTTTCTGTCCAAGACCCCTCTCCCCAAATGAGCTGACATTCACTTCACTGCACATTTCATCACTGTCACAGACAGTTCACACTAAAATATAGACAGCTACCTTGAAAGTATGTCTTAGCAGGAGAGTACCAAGTTGTTATCCTAATTGTTGGTTATATTTATATAGGACAAAATGCTTGTGATGCCATGTTTTTGTACAGTTTTATGTACATGCAAGTGAAGCTTTTTAAAACGTATGACAAAAGCCGATGGCATATAAACATTGTAATGTGTTTCTTGAGATGTGCACATCTTGCCTTGGTTGGATTGATCTTTGCTGAGTCAGTGTGAATGTGGCCGTTCTATGCCTGCACCGTAGTCATTCACTGGCTCCCTGCTCCCGAGGGCTTTATCAGAACTTCTGTTTATCGTGAACAGTGGATTGTCGGATCCTACCTGTTTGTTCAATTCCCATGTGTTCCGTTTCGTTCTGTTTTCGCATGTTAAGGAAAAATCCCTTGTAATAAGTCCTCAAGAACTTTGTAATAAAATGAGTCCTGTAAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1012304 lncRNA downstream 20866 41691227 ~ 41691445 (-) True G889877
TU1012301 lncRNA downstream 26160 41685430 ~ 41686151 (-) True G889874
TU1012297 lncRNA downstream 29959 41681001 ~ 41682352 (-) True G889870
TU1012296 lncRNA downstream 31538 41680544 ~ 41680773 (-) True G889869
TU1012269 lncRNA downstream 50870 41661241 ~ 41661441 (-) True G889842
TU1012894 lncRNA upstream 92671 41899551 ~ 41900146 (-) True G890337
TU1012913 lncRNA upstream 118057 41924937 ~ 41925248 (-) True G890356
TU1012926 lncRNA upstream 138695 41945575 ~ 41945791 (-) True G890367
TU1012939 lncRNA upstream 155832 41962712 ~ 41966849 (-) True G890374
TU1012942 lncRNA upstream 164076 41970956 ~ 41971195 (-) True G890377
XM_021617205.2 mRNA downstream 236332 41474987 ~ 41475979 (-) True LOC110533111
XM_021618473.2 mRNA downstream 270561 41256824 ~ 41441750 (-) False LOC110533890
XM_021618474.2 mRNA downstream 270561 41256824 ~ 41441750 (-) False LOC110533890
XM_021618476.2 mRNA downstream 270561 41256824 ~ 41441750 (-) False LOC110533890
XM_021618477.2 mRNA downstream 270561 41256824 ~ 41441750 (-) True LOC110533890
XM_036989349.1 mRNA upstream 197946 42004826 ~ 42011726 (-) False LOC110533896
XR_002475184.2 mRNA upstream 538836 42345716 ~ 42353693 (-) False LOC110534921
XM_036990356.1 mRNA upstream 737731 42544611 ~ 42553273 (-) True LOC118966777
LOC110533933 mRNA upstream 767893 42574773 ~ 42583308 (-) True LOC110533933
XM_036934573.1 mRNA upstream 782701 42589581 ~ 42593111 (-) True LOC110534922
TU1010822 other downstream 1164944 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 1818608 39854966 ~ 39893703 (-) True ksr1a
TU1009518 other downstream 2494573 39217313 ~ 39217738 (-) True G887329
TU1009059 other downstream 2526817 39183698 ~ 39185494 (-) True rpl36a
TU1007856 other downstream 3471752 38238950 ~ 38240559 (-) True G885767
TU1012917 other upstream 175821 41982701 ~ 41984417 (-) True G890360
TU1012952 other upstream 180831 41987711 ~ 41989801 (-) False G890385
TU1012992 other upstream 269861 42076741 ~ 42077947 (-) True G890403
TU1014179 other upstream 1252130 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 1386802 43193682 ~ 43247635 (-) True LOC110533954

Expression Profile