RNA id: XM_021618490.2


Basic Information

Item Value
RNA id XM_021618490.2
length 5160
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110533897
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42070963 ~ 42077962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTGGTGGACCATTAGTGTAGGTAGGCCTATATCTTAATCTAACATACATCCTTGGATTTATACTGGAGGATTTAGAAAATAAAGGATTAGGTCTAACACTGATGGTAAACACATCTAAAATACCGTTTACTGTATTTACCACATCTGCAGCTTTACAGATTTGCTGTAATTAAGACCAAGACCAGATGTATTGCTAGATACCCTACTTTACTTTTAGTATTCGTTttataatggtgtgtgtgtgcgtgtgcgtgcgtgtggtaATCCCTTTGTCTTTTTATCCGTAAATGTGTTTGTCACGATACCAACCGCCGCGTAGCAGTTAAATTCTGTTTCCGCTCTGGGTAAATGACGTTAAACATGCACTTAAGGCATGTGGAAAACAGGTCAATGCAACTGCACCAGCGAAAACCGCTGTGCGTCCCACGGATAGCCCCGGGTTTATTTCTCACAAAACATCTTAATTCTTCTGTTCGCTAATGATCCCGGAACACTTCCCTCTAATCCCCACTCCATTAATTAAAAAGAGCACGAGCCCACGGAAAACCTCGCCATCTGCTGTGGTTTCATTCCGGTAGACAGATTGTGTTTTCATCTTATTTAAAACAAGGGGATTGGAGAGTTTTTAGAGCAGGCGTGTGATGGAGTGATGCGAGAGAGGATGACCTCTCACTGGTGAGGAGACACtgagctccatcccatcctctaCTCACACGCACAGCTGGAATAGCCTAGCCTATAGACTACTGAAAactgtttattttattatttaaactATACATTTGGTCGTTTATTTTAGTGAGATGTTACTTATTTGCTCTTAAAAATAGATATTGTTTGGGTTTTATTCAAATATTTGCCTGTGCGTTGTAAGGTTTATGCAATAGATTTGATTGTAGCCTAGCCTATTACTTTCTTCTTCTGCAATTGGTCATTTTGAATGAAGCTACTGCAGTAGATCTATTTGACAAACCGAGGATCAAATAAACTTGAACCATTTGTAACCCCAAAATGGGTAAGACAGTTTTTCAAATATTAAAGCATGCGATATGTCGCATGAACCATGCATGCATGCTATTTTGTATCATAACCTTCAAGAGAGATAAATTAGTTTAATTCAACTAAACTGTGATAGCCTATCATTTTAGCCCCCCGTCCCGTAGAAATTGGGCTAAATAACACGGTCGCTGCATTTGATTAGTGCGAAAGATTAGCCTATGGTGTTTGTGCTCAAACTGGAATCAGAGCAGATGTCGCTTTTCCCTATCGGAATACTGGGATTGAGCCaataaacacacgcacgcacgcgcgcgcgcgcacacacacacacacacaccagagcatCACAATGCTAATCAGAGACACCAACCTCCTCTGCGCaccccttcttctctcctcttcttttctcactcacacacacattcaaagacACTCCGCTGGGGCGAACTCCAAGGCTCCACTTCAAGTTGTGGATGCTATTAGCCTATATCTTTATATTCACTTTTTTCCATTTAGAATAAAAGAGTACAATTCGAAAATGATTATTTACAGAATAATATATATTTAAACGTAATAATTTTCTAACTGAAACCCATGGAGTGTGCATTTTTTGTAGTATAATCCGCCGCTCAGATGGACCTCCGAGGCGCGAAGAGACGGCTTGGGGGGATATGGCAGGTGACATGCCTAGCTCTCGTCGTATGTGTCCTGGATTTAGTTTGGGCTCAGATTCGTTATTCAATCCCTGAGGAACTGGAACATGGCGCTTTTGTTGGAAACATAGCCGAGGACTTGGGTTTAGACGTCGAGAGACTCTCTGCGCGCAGGTTCAGGATAGTTTCAGGCGCAAAAAAGCAATACTTGGAGGTGAATTTAGAAAATGGTATTTTATTTGTAAACGAAATAATTGATCGAGAGGAACTATGTGAACAGAGTCTGTCTTGCTCTTTCCATTTGCAAGTGGTAATCGAAAACCCATTGGAACTGTACAGGGTTGAGGTGGAGATTTTAGATGTGAACGATAACTCACCCAGTTTTCCGTGGAGTGAGTTTAATTTGGATATATCCGAGTCGGCGGTACCCGGGTCCCGCTTCCCACTAGAGAGCGCGCAGGACTTGGACGTTGGAAGCAACTCGCTCCGCTCGTATCTGCTGAGTGTGAATGAACATTTTGTCCTGGACATCCAGACGCGTAGTGATGGCAGTAAGTTTGCGGAGTTGGTCCTGGAGAGCCCCTTGGACAGAGAGCAGCAGAATACGCACCAGGTGGTGCTGACGGCCGTGGATGGAGGCTCGCCAGAGAGATCCGGGACAGCGCAAATCAATATAACAGTTCTGGATGCAAATGACAACGCGCCCGTGTTCGACCAGTCTTTCTACAGAGTGAGGCTTGTGGAAAACGCACCGAAGGGCACCGTTGTGATAAAACTAAACGCATCGGATTTGGATGAGGGTCCTAATGCGGATATCACATACTCTTTCAGCGGGCATGCTCCCATAAAAGTGCGCGAGCTTTTCAGTGTGGATTCGCGCACTGGAGAGATCAGAGTGAAAGGTGTCGTAGATTATGAAAAGGCCAGGATGCATGAGATATATGTGCAAGCCAAGGACAAGGGCCCATCGGCAGTGGCCGTGCACTGTAAAGTTCTAGTCAATATCTTAGATGTGAATGACAACCTCCCGGAGGTGATCTTGACATCAGTGTCCACACCTGTCCAAGAGGACGCACCACCGGGGACTGTGATAGCTGTCATCAGCGTCATGGACAAAGACTCAGGTGAAAATGGAAATGTTGACTGTGAAATTCCACATCATGTCCCCTTCCAGCTCCACTCCTCTTTTAAGAACTATTACACTTTGGTTACTTGTGATTTTTTGGACAGAGAGACGGTGCCAGAGTACAACATCACTCTCACAGCAAGAGATATGGGCGCACCTCCCTTGTTCACAAGGAAAACTATTTTGGTTCAAGTGTCAGACATGAACGACAACACACCCCGATTCAAGCAGCCGTCATACACCGTCTATTTGACAGAGAATAACGCACCAGGAGCCTCAATTTGCTCGGTTACTGCCCTGGATCCAGATTCTGACCAAAATGCCTATCTCTCTTACTCTATTCTGGAAGGTGATATACATGGGATGTCCGTGTCCACCTACGTCTCCATAAACTCAGACAACGGGAATATTTACGCATTGCGTTCTTTTGACCATGAGCAGCTAAGAAACTTTCAGATTTTAGTCCAAGCACAAGATGCCGGGTTTCCACCCCTGAGAACCAATGTTACCGTAAATGTCTTTATTTTAGACCAAAATGACAATGCACCAGTCATAGTAGCACCTCTACCCCAAAACGGCACCGCGGCGACTGAAGTGGTGCCCAGGTCAGTTGATGCTGGCTATCTTGTGGCAAAAATCACTGCGATGGACGCAGACGCAGGTCAAAACTCGCGTCTGTTCTACCAGGTGCTCCAGGCAAACGACCCGAGCCTGTTTAGCGTCGCTCTGTACACGGGCGAAATCAGGACAATTCGCCGATTTGTGGAAAAAGACCCCATAAGGCAAATGCTGGTCATTCTGGTCAAGGACAACGGTCAGCCACCCCTTTCGGCCACAGTTTCCATCATCCTGTCAGTTGTTGACAACGTGCCAGAATCGCTGCCTGATTTCGGCGACCTCACACTGAGCCCCCAGTACCGCTCGAACCTCACGCTGTACTTAATAGTGTCTCTGGGCGTTATCTCGTTCACGTTTCTGGTGGCTATTATCGTCCTGGCGGCGATAAAGGGATACAGGGATAGACATTCCATTCGGAGGTATAACGTCTCTCTGAGTGCATGCTGCGGGTTCCGATCAGAGGAATCTACCACTGATGTGTTCAAGAAGTCCAACTTGAACGTGCAGATAACCACAGGCACCAAAGGATCCACGAACTGCGTTGAGGCAAATGGCAACGGCCCCCTTTCTCAGCCATACTGCTACAAGATGTGTCTGACCCCGGAATCATCCAAGAGCGATTTCATGTTCCTAAAGTCATGCAGTCCGATGAATGCGACTCCACAGAAGAATAATGCCAAGGGCGCAGACTACCCCAAATCGGGTTGGAGCGCACAGGACTCCCGCAGCCTGATAGTGAACAACGGAGCAACTATTCCGAACGAGCTCAAGCAAGCGAACATGGACTGGACATTGACGAAAAATCGACGAAATTCAGCACACAAAAGGTCAACAAAAATCTTTAGATCCATGGAGAGGACCTTCCCACGTAGACCCAGGCCGGACCCTGATGGCTTCTCCTGCCCGGTGGCACCGCAGTACTATACCTGGGGTAGTCATATGCGTGAATACAAGATGTCCTCCCAGGTCGAAGGGATTGGAGGGGTTGGAAGTGTAGGAAGGGTTCCAAACCGTTCGTGGACTCCGAGTTACACCCAGCCTCCATCTGCACAGCCACCACCTGACTACCAGCACAACGTCTACATCCCTGGCACACCGTCTGGGTACTGCACTCTGAAGCCTGCACCCAGGGGGGAACTGGATGTCTACAACTCATTCTCTACGTTTGGAAAGAATAAGAGGTTCATCTCTAGCTATGACCCGAGCTTTGACCAGAGAGGGGACAACCTGATAAACAAGGACTTTTTTAAATGAATATATTAGAAGACACTGTGCATACAATTTAATACACACTTCCGTGGATGTTCATTAACTATTAATATAATCAACCCATATAGTATAAACCTCTGTGCACAAGGAACATTTAAATAGTTTAGTATATTTGAATCCATGCTTCGAACACATAACTTAATAATTTACAGCATATTCTTTTCTCTCAATACAGCAGTGTCATAATTCTCTATTTTAATTTGTATCATGTACAGTCCTAGTTGATAATGATGATGAGATTGTGCAGATATAAGGGCAATTATAGTCACTTGTGGGGATAATGAGGAAAATGATCTGAGGATATCTGTTCCCAGCAGTTATGGCAAATTCTCCAAATGCCTTGAGGGTTGCGTTGTGAAGATTGTGCACGGCATTCTGTTAGGCAGTGATTTACAAGCATGTATATCATATTGTTGTACTTTATACCTTCATGTTTGACCCGTTTGGCTTCTTAAACACGTTTATATGTATAAAATCGGATTTTACTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1012648 lncRNA upstream 46653 42016405 ~ 42024310 (+) True G890203
TU1012652 lncRNA upstream 46995 42020758 ~ 42023968 (+) True G890205
TU1012646 lncRNA upstream 55556 42015207 ~ 42015407 (+) True G890201
TU1012644 lncRNA upstream 57165 42013506 ~ 42013798 (+) True G890199
TU1012640 lncRNA upstream 61303 42009439 ~ 42009660 (+) True G890195
TU1012704 lncRNA downstream 12864 42090826 ~ 42153778 (+) False G890228
TU1012692 lncRNA downstream 13750 42091712 ~ 42154093 (+) True G890228
TU1012802 lncRNA downstream 17037 42094999 ~ 42098654 (+) True G890247
TU1012804 lncRNA downstream 19002 42096964 ~ 42101322 (+) True G890249
TU1012874 lncRNA downstream 256347 42334309 ~ 42334516 (+) True G890318
XM_036990295.1 mRNA upstream 66173 41993741 ~ 42004790 (+) True LOC110533895
XM_036990296.1 mRNA upstream 67296 41993741 ~ 42003667 (+) False LOC110533895
XM_021618483.2 mRNA upstream 85565 41979397 ~ 41985398 (+) False LOC110533894
XM_021618484.2 mRNA upstream 86555 41979396 ~ 41984408 (+) False LOC110533894
XM_021618502.2 mRNA downstream 1580 42079542 ~ 42085755 (+) True LOC110533908
XM_021617206.2 mRNA downstream 34195 42112157 ~ 42115188 (+) True LOC110533112
XM_021618493.2 mRNA downstream 39271 42117233 ~ 42150557 (+) False LOC110533898
XM_021618494.2 mRNA downstream 53686 42131648 ~ 42149741 (+) False LOC110533898
XM_021618492.2 mRNA downstream 53755 42131717 ~ 42150557 (+) True LOC110533898
TU1012334 other upstream 353671 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 353671 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 353671 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3258824 38755509 ~ 38812139 (+) True LOC110533845
TU1005877 other upstream 5219810 36849646 ~ 36851153 (+) True G883966
TU1012699 other downstream 253 42078215 ~ 42153778 (+) False G890228
TU1013804 other downstream 904720 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 1018758 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 1456354 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 1456354 43534316 ~ 43600230 (+) True G891741

Expression Profile