RNA id: XM_036990351.1


Basic Information

Item Value
RNA id XM_036990351.1
length 2986
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110533929
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42433880 ~ 42455077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cCTGcccctgttacaataaacattatacttctacacagtctgcacttgggtcttacctgataTACCTGTCATATAGCTCCCTCCTTTTCATCAGGTCCCTTTGATGGCTTTTGCTCTGTTGAGGCATTTATCCAGGCCCACTTCACCATTACTAGATATGAAGTGCATAGTCGGCCCTCAACAAAGATCTCTTTCCTGGCTGACTCCTGATTGACTGTGCATATTTTCTCTAAATTACAGTCAATCTTTCCTTATATTCAGACTATGGTTAATTCATGATCTTGTGAGGAAAGTACTGTATGTTTGGCCTGTGCTGACTGGGCTGGCTGCCTGCTGTGGATGTTGCCTGCGTAGCGCCTCATGCCTCTGTAATTTGATTGGCGTTTGGATAGCACAGTATAATCACATCAACTGGGAGCTTTCATAGCTCCCCTATGTCGGTGTCATCCATCCTTAATGATTGTATTGGATGAGCCCTGTTCAGGCCAGGTTTCATCTGTCTGTAATGGGAACACTAGCTACAGTACTTCACCTGGGTTAGGGAGTTGTAGAGGGAGGGCAGCTAGTGGGAATAACAGAACTGTCACTGGTTGTAAACAAGAGACTGTCTCCATTGAGCCAATTATAACATATTCCCATAAGAACATGGATATTTTCACTAGTCTGGACATTTTCAGTACCTTGGACAAGTCCAAGCTAATGTTAGAGCCCAAATGTGATGTGGCCTTCTAAGAAGTGCTAATGATGTCTCAACATGGTTTATAAAACAATGCCTTGTCTGGTGGCCATTTCCTAATATTCAATGTTAGATTTTAAATGCACATTTTGAGCAGGCCTTTAGGTCATCTTTGACTCCTGGGTTCTGGGTCCAATATGTAAGCTGCATACTCAAAAGGCCTGCAGATAGACTTTAGCTAAGCTTCAAGCTAATGCTGGCGGAATGTTCTTGTGTTCTTCCAGAACAAACAGCACCACACTGCATCAGAGGCAAGTGCATTCATTAACATTTCTCCTTCACATGATGTGCAATTGAATTACCATCATGAAAGAAAACAATTATTAAATGAAGTGAAGGAGGACCTTTGATATTTcaaccatgtactgtatattagacACCAAAGGGCCATTGTTTCAGTTCTGTAGTCTAAGAGACGTGCATTTTcatacataaaaaatatatatattatatatttgcgTAATGAGAATTTTCTCATGGGACAATGTAaaggctgttatgttatccaaCACAGCCTTAACCTCGTACCACTTAACATCAGTCTACTAATGCACTATCATGTTGAAATCAACACAGCCTTAACCTCGTACCACTTAACATCAGTCTACTAATGCACTATCATGTTGAAATCAACATAGCCCAATGgccattgttttgtttttttgtacacCAGGGCAGCTTCAAAGAGGACATCTTCTGTGAAATGATTAAAAAAGAGATGGCTGCAATACAGCATCCCTCTACAGTGTGAAGCCCTCATTAATCTGATGGATACTGACAGCTGAATTGACAGGACCCTGTCATTATACCAAGTCCTCAACAAGCTTGTTAAGCAGAGGGCTGGATTCTATGCAGTAGTCCTGTCTGTAGGCCTGCCTGCAGGAGAAGATAAGCTGACAGAAGCAGTAGGTCTGATGTGGAGGCAGGGCTGGACCTTGTGACCTAGTGCAGGGGGAGGGACACCATGATCTCCACGGCACTCCGTTGgctgtttctggtgtccttcaTCGTGGTGACCATCGGCGGGAACGTGCTGGTGTGTTTGGCCGTGGGGCTCAGCCGCCGCCTGCGCCGCATTGCTAACTGCTTTGTTGTGTCACTAGCTGTGACGGATCTGTTGCTGGGCCTGCTGGTGCTGCCCTTCTCTGCCACCCTGGAGCTGCGGAGTGGACACTGGCCCCTGGGGGGCACCCTATGTAACATCTATGTATCTCTGGATGTGATGTTTTGTACGGCCTCCATTCTGACTCTGCTGGCCATCAGTGTGGACCGTTACCTGGCCATCTCAGCCCCACTCTGCTACCCCCGCAGGGTCACCCCTCCCCGAGTAGCCCTGGCCATCACCACCATCTGGGTCACTTCCCTGGCCATGTCCTTCCTCCCCATCCACCTGGGCTGGAACACGGCTGACTTCAGGGTGCAGAACCTGGACTGGGGCATTTGGGACGAGGTGGAGGAGGGACGCACCTGCCGCTTTGAGTGGCATAACAACTACGTGCTCCTAGATGCCTTTGGCACCTTCTACCTCCCACTACTGGTCATGTGCGGGATGTACCACTGCATCTTTCAGATAGCACGCAAACAGGTACGGCGTATCCGAGCTGCCACACCCTCATTCGCCCCCACAGCATCAGCGGCGGCCACAGCGCGGGAGCACAAGGCCACAGTGACTCTAGCAGCAGTCCTGGGGGCCTTCATTATCTGCTGGTTCCCCTATTACACTTTCTTTACCTGCATGGGCATCGGGGCAGAGACTAACCCCCCTACCACTGCCCACTCTGTGGTGCTGTGGCTGGGCTACTTTAACTCCGTTGTCAACCCCATCCTGTACCCGGCCTTGAATAGAGACTTCCGCAGAGCCTATGGGGAGCTGCTGTGCTGCAGGGGGCCGCGGTGGAGACACATATCCACAACTATCTGTGTGTCCTTGCGGAAACAAGTGCCCCTCTCTAGCGAACACAGAGACACTGATCTGACCAATGGCCACACAGACACCCTCCCTAAGAGGGAAAGAGCCTCACCTCTCAGAAGAGCAATGGCAGCAACATTGCTGACCAGACCTGGTAAAATACAATACACACTGGATAGGGACTAGGTAACACATACAGGACACTTTATAAAGGTGAATGAGGGACAGTTGTTCAGGAGCTAGTACAGTATGATATAAAATggctgatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013216 lncRNA upstream 33986 42417647 ~ 42417899 (+) True G890597
TU1013213 lncRNA upstream 36911 42414492 ~ 42414974 (+) True G890594
TU1013212 lncRNA upstream 39707 42411858 ~ 42412178 (+) True G890593
TU1013193 lncRNA upstream 59868 42391660 ~ 42392017 (+) True G890583
TU1013167 lncRNA upstream 84223 42365814 ~ 42367662 (+) True G890564
TU1013275 lncRNA downstream 9489 42464566 ~ 42465549 (+) True G890654
TU1013283 lncRNA downstream 15515 42470592 ~ 42471000 (+) True G890662
TU1013342 lncRNA downstream 120222 42575299 ~ 42575505 (+) True G890714
TU1013343 lncRNA downstream 120578 42575655 ~ 42575931 (+) True G890715
TU1013344 lncRNA downstream 120912 42575989 ~ 42576305 (+) True G890716
XM_036989350.1 mRNA upstream 44803 42396319 ~ 42407082 (+) True LOC118966631
XM_036990324.1 mRNA upstream 145869 42291472 ~ 42306016 (+) False LOC110533900
XM_036990352.1 mRNA downstream 40125 42495202 ~ 42529359 (+) False LOC110533930
XM_036990353.1 mRNA downstream 40129 42495206 ~ 42531033 (+) False LOC110533930
XM_036990354.1 mRNA downstream 52729 42507806 ~ 42529359 (+) False LOC110533930
XM_036990355.1 mRNA downstream 60099 42515176 ~ 42529359 (+) True LOC110533930
XM_036990357.1 mRNA downstream 83339 42538416 ~ 42542432 (+) False LOC110533931
TU1012699 other upstream 298107 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 734593 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 734593 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 734593 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3639746 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 527605 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 641643 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 1079239 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 1079239 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 1087389 43542466 ~ 43555517 (+) True G891740

Expression Profile

XM_036990351.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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XM_036990351.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_036990351.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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