RNA id: XM_036990357.1


Basic Information

Item Value
RNA id XM_036990357.1
length 1311
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110533931
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42538416 ~ 42542857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaatacaatagaagaagaagaaagaaggcGTGGCGATTGAGCCCGGGTAGTGTGTCTGCGTAGTGAGGGGGCCTGTCAGTTTTTCCATTATCTTCGAAGTGCCCTGTCTCAGCAAAGAAAATGAATGGTCTGGACGAGGAACAAATGGGACCACAAACCTTTCTCTATGGGTGTGAGTTGAAATCTGGGAAGGATGTTGTCTTCAACCCAGAAGAGGATGACTTTGAGCACCAGCTAGACTTAAGGATGCTGTGTGTGGACCTCAGCACCAAGGATGAGCTGCACATCGTGGAGGTGGAAGGACAGGACACAGAGGGTCAGAAGGTTAAGGCTGTGCTGGCTTCACTCAAACCTTCCACCCTGCCAAGTGTGTGTCTTGGTGGGTTCGCAATCACACCCCCAGCAGTTTTCCGTCTCAAGGCTGGATCTGGGCCAATCCACATCAGTGGCCAGCATCTTGTCATGATGGGGGGAGATCAGTCTTTTGATGAGGATGAAGAtgatgaagaggaagaagaggtacAAACGTCCAAAAAAAGGCCTGCGTCAGCACCGGCTCTTAAATCTCAGAAAAAGATGAAGATGGATGTTGGTGACGAGGATGAggatgatgatgaggatgaagatAGTGAGGCTGAAGAATCTCCTGTTAAGGCTAAGAAGACTCCATCCAAACCTCAGACTCCTGCCCACGGTGGAAAAGGCTCTAAAGCCAACACACCAGCCGGAAAACAGGTAAAGACCCCCGGCAGCAAGGGTGGACAGACTCCTAAAAATGGACAGACCCCCAAAGCAACTAGCAAGACCCCCAAACAAACTCTCCATGTTTCTGAGCTCAAGGTCAAGATGATGGCGACTGTGGAGAAGGGAGGGAAGTTGCCTAAACTCCAGTCCAAGTTTGAGAGCTTTGTGAGGAACAGCTTCAAAGTCACAGAAACCAAGACCGTAGAGGAACTGTGGCAGTGGAGACAAACTGTTGAAGACGGCAAATAACTTTTTTCTTAAACTATTTTTAGCCATCTCATCAATTCTCCCCCCCGCCTGCCTACTCTGCCCTCTCTTGGCCCTTCCTTCCCATGTCTGAATCAATGCTCTGTTACGCTACACTGCTGCAGCATTTCATCTCCAGTGCCCTGCTAGAGTGGAGCTAATGGCACTGAGCCCCATCACCCCTGGCCCTACCAGCATCACCCTCTCCAAGAGGACGGGAGGGGTGGTACTATTCCAGCTTTCATGTGGACGGACCTGGGGAAACCCATTTTCAACTTTACATTTTGTAAATGTGTAAATTAAATCCTTGCTACTGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013283 lncRNA upstream 67416 42470592 ~ 42471000 (+) True G890662
TU1013275 lncRNA upstream 72867 42464566 ~ 42465549 (+) True G890654
TU1013216 lncRNA upstream 120517 42417647 ~ 42417899 (+) True G890597
TU1013213 lncRNA upstream 123442 42414492 ~ 42414974 (+) True G890594
TU1013212 lncRNA upstream 126238 42411858 ~ 42412178 (+) True G890593
TU1013342 lncRNA downstream 32867 42575299 ~ 42575505 (+) True G890714
TU1013343 lncRNA downstream 33223 42575655 ~ 42575931 (+) True G890715
TU1013344 lncRNA downstream 33557 42575989 ~ 42576305 (+) True G890716
TU1013364 lncRNA downstream 63649 42606081 ~ 42606395 (+) True G890733
TU1013365 lncRNA downstream 65567 42607999 ~ 42608350 (+) True G890734
XM_036990353.1 mRNA upstream 7383 42495206 ~ 42531033 (+) False LOC110533930
XM_036990352.1 mRNA upstream 9057 42495202 ~ 42529359 (+) False LOC110533930
XM_036990354.1 mRNA upstream 9057 42507806 ~ 42529359 (+) False LOC110533930
XM_036990355.1 mRNA upstream 9057 42515176 ~ 42529359 (+) True LOC110533930
XM_021618519.2 mRNA upstream 83339 42433880 ~ 42455077 (+) False LOC110533929
XR_005053665.1 mRNA downstream 58980 42601412 ~ 42603732 (+) True LOC118966778
XM_036990359.1 mRNA downstream 197733 42740165 ~ 42811046 (+) False LOC110533114
XR_005053666.1 mRNA downstream 324336 42866768 ~ 42885650 (+) False LOC110533937
XM_036990360.1 mRNA downstream 345383 42887815 ~ 42923475 (+) False LOC110533939
XM_021618527.2 mRNA downstream 345386 42887818 ~ 42923475 (+) True LOC110533939
TU1012699 other upstream 384638 42078215 ~ 42153778 (+) False G890228
TU1012334 other upstream 821124 41712327 ~ 41717292 (+) False G889906
TU1012335 other upstream 821124 41712327 ~ 41717292 (+) False G889906
TU1012336 other upstream 821124 41712327 ~ 41717292 (+) True G889906
TU1008492 other upstream 3726277 38755509 ~ 38812139 (+) True LOC110533845
TU1013804 other downstream 440250 42982682 ~ 43109676 (+) True G891133
TU1013875 other downstream 554288 43096720 ~ 43097617 (+) True G891188
TU1014469 other downstream 991884 43534316 ~ 43535705 (+) False G891741
TU1014470 other downstream 991884 43534316 ~ 43600230 (+) True G891741
TU1014468 other downstream 1000034 43542466 ~ 43555517 (+) True G891740

Expression Profile