RNA id: XM_036990356.1


Basic Information

Item Value
RNA id XM_036990356.1
length 2465
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118966777
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42544611 ~ 42553273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTGATCCGAACTGCGATTGCCCTGCAAAGTCAGTGTGCCAAACATCAGCAAATCGCAAATGGACGGATCCGTCAGAGCCGCGAAGGATGGTGGAAAACTCGCTGCCATAGAAAGCCATAGAACGCAAACTATCCAAAACGAGATTTAATCGGGAAAGAGCTGGATGCTTAACTCAACATAACACATTTTTACTCTTAGGCTACATCATAACCTTATGCAACATCGGCTCTGTCCGAGGACTGCGTAAAGGTACTGGAAAGGTTTTGGGAGCGAGAATGGAGCGGGCGCCAAGCTCAAGCCCCAGCGGCGTAAATCAGCCCTCACAACCTCCCCAGCATGAACCTATTAGTTTCGGCATTGACCAGATTCTCAGTGGTACCGACCAGGACGGTTCACAGAACACCACCCGGAGTGGTTCGGATACTGGGAACTTCACAAGTGGAGGAAGTTACCACCTCGTTAGTCCAAGTGGAGCCAGTGCAGCGCCCTTCACTTCTCTTTCCGGTTCTTTCCATGGAATCGCATCATCATACGAAGAATCAAGTGCATACGGAGTGAACTTGACTTTCACCCCAGGAGGGGTGATACGAGTCCCGGCGCACAGGCCGCTGGCCGCCGCAGTGCCTCCTCCTATAGCCAGCGCGGTACCAGGGCTAGGCAGCATCAGCTTCCCCTGGATGGAGAGCAGCCAAAGATTCGCAAAGGAAAGATTCGCAGctgcactgACGCCATTCACAGTGACCCGGCGGATTGGTCACCCCTATCAGAACCGCACCCCTCCGAAGAGGAAGAAGCCGCGGACATCTTTCTCCCGGGTGCAGATCTGTGAGCTGGAGAAACGCTTTCATAGACAGAAGTACCTGGCCAGCGCTGAACGGGCGGCTCTCGCCAAGACCCTCAAGATGACCGACGCACAGGTCAAGACCTGGTTCCAGAACCGCAGGACCaagtggagGCGACAGACAGCTGAGGAGAGGGAGGCGGAGCGGCAGCAGGCCAATCGGCTGATGATCCAGCTGCAGCATGATGCCTTCCAGAAGTCCTTGAGTGACTCGGTTCCGTCCGATCCACTCTGCATCCACAACTCCTCCCTGTTCGCCCTGCAGAACCTGCAGCCGTGGGCCTCTGAGGAAGCAGCAAAGATGGGCCGTGTCACCGCTCTAGTGTGACAGGGACAGGGTGGGGCCCTCTGGACATTACACACTCTGACTGATATCTAAGAAACTGCACAAAGGTGATCCGTGAGCAAATTGAAATGAATGATTTATTATTGTCCATCCAGAACATAGCCAAATTGTGTCTGAGGGAGTCTGAAGATTAAACAAAAACTCCAGTTCCTAAGTACCCTGATATGATCTGGACATGCAGAATGTTTGCTGGGTCCTTTGTGTCAGACGCATCCTGGGTGGTAGCCTATGAGCTGTGGCGATGTACGTGACACACGTCACTGAGCCAGCCCTATAATTCCAAACTGACATATTGACTGACTGACACAGCACAGATTGGCTCATCTGTTTCTCCCACGTCCCATCTGTTCCTTCACCACTACAGTTACACTATCAGCTCTGTGCCCCTGCATCTCAGAGCCGACCAGTCTGCAAAGGATGAGAAATGgatgggaaacagagagagagaatacactaATGTTCTGAGAATATATAAAATGTCGTTGTTGCATGGAATCATTCTCATCATCCTCTCATTTTCCATCTTGAATTCCATCTAATTGTTTCCTCTTTAGACTGCTGGTTAGCAGGATGTTTTTTGTACTGGGTGGAGACAGACTTAGGCAAACACTGACCCTAAAAAGCCACTGAATGTATTACACGCTTTGATTCCAATCTATTAACACTCTAAAGCTCAATTAGGGTGAATAATTACATTTGAATAAGAAGGCAAACTATAAAACCAGATAGCCACAAGTGAGATATTGTAGAATCAACTGCTTGCTGTTCTATAGGGCAAGTGTTTAGTGATGTCTGGACAAACCAGATAACTGCTACCTCTTCAAACAGGAGCCACCCAGAACACTAGCAAGACAtctactttttttctctctctctctctctatatatatataaaactcatTGAAGGGTTAATACACAGCTCAAGGGCTATTTTAGAATAATAACATTTGCCAGTGGGACAAGAAGCAATCCAGTAAAAGAGGAAGCTAATTATTTATAGTGTTGTTTTATTCATGCCAGGCTGGACCCATTCACTGGGAAGTGTGGTGCATGAGGGTGGTATATCAGACCTGAGAGGTGGAGAGTCTGGTTGACTTAGTTCAAATGTGGTGTAAAGGACTTTGTTGTATGAGTCATCTGAGAATATTTGACGCGGTGAAATAGATGGATGATAACAGCATCTCTCCCCGTGTATCATATTTGACAAATATGTAAATAACTAAACAAAacctaataataataaaaaagcaTTCTCTTGTTTTAGCTTTGAACCAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013438 lncRNA downstream 315 42544011 ~ 42544296 (-) True G890798
TU1013437 lncRNA downstream 730 42543462 ~ 42543881 (-) True G890797
TU1013431 lncRNA downstream 13166 42531229 ~ 42531445 (-) True G890793
TU1013394 lncRNA downstream 13586 42522665 ~ 42531025 (-) True G890762
TU1013400 lncRNA downstream 57750 42486516 ~ 42486861 (-) True G890768
TU1013467 lncRNA upstream 28843 42582116 ~ 42582489 (-) True G890827
TU1013483 lncRNA upstream 71422 42624695 ~ 42624908 (-) True G890843
TU1013486 lncRNA upstream 74412 42627685 ~ 42627899 (-) True G890846
TU1013455 lncRNA upstream 76530 42629803 ~ 42630099 (-) True G890815
TU1013492 lncRNA upstream 85435 42638708 ~ 42638910 (-) True G890852
XR_002475184.2 mRNA downstream 190918 42345716 ~ 42353693 (-) False LOC110534921
XM_036989349.1 mRNA downstream 532885 42004826 ~ 42011726 (-) False LOC110533896
XM_021618481.2 mRNA downstream 737731 41712311 ~ 41806880 (-) False LOC110533892
XM_036990292.1 mRNA downstream 737731 41786983 ~ 41806880 (-) False LOC110533892
XM_021617205.2 mRNA downstream 1068632 41474987 ~ 41475979 (-) True LOC110533111
LOC110533933 mRNA upstream 21500 42574773 ~ 42583308 (-) True LOC110533933
XM_036934573.1 mRNA upstream 36308 42589581 ~ 42593111 (-) True LOC110534922
XM_021618523.2 mRNA upstream 55314 42608587 ~ 42616547 (-) True LOC110533934
XM_036990358.1 mRNA upstream 97012 42650285 ~ 42707718 (-) True LOC110533935
XM_021618526.2 mRNA upstream 259314 42812587 ~ 42828697 (-) True LOC110533936
TU1012992 other downstream 466664 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 554810 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 560194 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 1997244 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 2650908 39854966 ~ 39893703 (-) True ksr1a
TU1014179 other upstream 505737 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 640409 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 1130301 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 1157212 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1646123 44199396 ~ 44209264 (-) True LOC110533117

Expression Profile