RNA id: XM_021618526.2


Basic Information

Item Value
RNA id XM_021618526.2
length 4535
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110533936
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42812587 ~ 42828697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCCGAACCCCCCTCGTTACATGTGCTGCAGCGAGGGGTACTTGCTCCGGTGTGCACGCGGCATTTCTTTGCGCTCGGAACAATGGACAAGGATACAGGTGGAGAAAATATAAACGAATTTCGAGAGAATTTCATATAGGCTGCTGGAGTGTAGGCCTACAAAATAGATAATTTGGTCAcggatgtgttttttttttttttactgtgtatATTACACATTTACTTTGTTTAGCAATGCATTCTAAAAATGTTGGACCATTTTGCGAATGTCTTCCATTTCAGGGCTGGTGGCGGTACTGCTGACGGTACTCCAGTGGGCAGGGCGAGGCCTCCCTTCTCCTGTCAGGCCCATCTGTGACCCCCGCGTTCTGGACCGCTTCATCATGGAGGCCCGCGACACAGAGACCGCTCTGCGAGGTTGCAAGGCAGGGTGTGGCGTGACAGGCACCTTTGTGGTTCCACTGACCAACGTTGACTTTGTGGTATTGGAGACAAAGGATactgaggagcaggctctGGAGGTCCAGTCGGGGCTGTTTCTGTTCGGCCAGGCCCTGGGTGCTGTGAGGGAGTCAGTGAGCCGTGCTGCCGTAAAGAGCCTCATCGACAACAACAAGAGCAACATCCACAGCCTGGGCCAGGTGCTGCGCAGCCTCCACATCAAGgacctgtccctctctccagtgCCAGCAGTAGGTGACTCGGCGACCAGGAAGGTGTCGTCCCTATCCGAGCTGCTCCGTGTCCACACCAACTTCCTACGAGGGAAGGTTCGCCTGCTGCTCACCAACGCACCTGCCTGTCAACAGAACAGCACGTGATTGGAGCTTTCCCGGAAGACAGAGGCTGTGATTGGACCGTTGTTTAGAGAGAGGATGAGGTCATTGGACTTCTGCTGAAATCTCTGAATGGACTTCCAAGTATGGAATGTGTAGACAAGGTCGTTGTTGACTGGATAGAAACTGGTGGGAAAGTCAGTTGATGTGGGTGGAGCTGATGAGAAACCATGAACGAGTGAGAGAGGAAAAAAGGTCACTTCTACAACTCATTGACCTCATCGGTTCCTAGTACTACCTGTCAGTACCACAATGAGCTCCGATGCATGCAGCGGGAATAAGCCACAGACAGTACccgctgggcacagacgtcaattcaatgtctattccatgttggttcaacttattttcattgaaatgacgtggaaacaacattgattcaaccagtttgtgcctaGTGGGTACAGATCATATGAGAAGATGATATATAAAGTCCTAAATCCAATGATTTcgatttttcattttatttatacattgtcttaaaatgtgtttttgtataaCTTTTGTGTTATAAATCTCTATTTTCATATACGAGTGTGTACTTTGAAGTCTTTGAACCATATGTTATGATTGATGCTCAGGTTTAACATACTGTAGTCAGTGGTTTGTGTGTTCATGTAATATGCTTGTCAGTACTGTTGTAATTCAGACAATGTATTAGTCACTTCTCACTGTGTGCTCTCTGCACTCGGACTGTCTGTGTGGCCCTCCCTCCGACTTACCCTGTCTTTGGGGTCAGAGTAGACATTGTAATTTCACCACCAGGCAGCACACACAGCTCTCTGGCCTAACAAGCAGAGCACTGAGTCTGAGAATTGAGATCAGTTCCTAGTGGAGACCGTTCTGGactctgctgccctctgctggatAGACCTTGGCATCGTTGCCCTACTTCTGCCCTGGTTATACAAAGAACAGAAACCGGCTCTGGCTCTAAAAATATCATCAAGAAATCATCTCATTATGTGTATATAGACCTAGTCATTTTCACAAAAAAACGAAACAAAAGAACACCAATCAAAGAAGATCAGTAATGTCAACATGGGTAATCATTAATCAGATTAGCAACCACTCACAGATTAGCGATGATAAATCATTGGATATTGTGTGTTAAAATATAGGGAGGCAAATATGATCATTTGTTTAAGGATATCTTTTTAATGTTCTCCAGTTCAGACACACAACATACAGTGTGTCATAGCCTCTATATGAAATGTTAACGTCATTCTTTAAACCCGTTCGTTACGCTTCCTTACAGTGTCTCAATCCTCCAGTAGGTTACGGATTCCAGACTAAATGAAAACAGACACAAACAGGTGCAAGTCTTTTTCGGCAACCCAGCGCGAACCTTGGAAAAGTAGAGATTTGCATCTttgcaatgtttttttgtttgtaacaTTGAGCCAACGCCAGACTTAGTGTCACCGTGTAAACAGGTGAGAGTGTGCTTCCAGTCTGTTGGCTGTCATATCCCCGGTTTCCAAATTTCAGTCATATTTTTTAAAATAGAAAAATACTGCCttttctttcttctttttttgGAAACATGGGCATCTCAAATGGACAGCAAACAGGTGAGCTGATATTCCAGAAAATGACTTAAACAGTGTGCATGGCAGACATTATAGTAAAGGATAGCAAAGCAACCACAACCATCAGAGTCTGAAACAATACTGAAAGAGTACTGACTGAAGGTGTTGACAacatactgtacctgctctaagcTATTCGGTAATACTATGTCACTTCTCAGGACAGTAAGTGTCACTAACAATTACCAACAGCACCACCATCAAGATTCAAGTTCCCTTGTTTTGTAGGTTTGGGTTGAGCAcagtttcaaaccatgcctatctCTACCATTATCACTGCTTTCCTCTACCATTATCactgccttcctctacctccatcattaTCAATGCATATCTACCATTATCCctgccttcctctacctctaccattaTCACTGCTTTCCTCTACCATTATCACTGCCTTTCACTACCTCCATCATTATCAATGCATATCTACCATTATCcctgccttcctctacctccatcattaTCACTGCATATCTACCATTATCcctgccttcctctacctccatTATCACTGCTTTCCTCTACCATTATCACTGCCTTCCTCTACCTACATCATGATCACTGCATATCTACCATTATCActgccttcctctacctctaccattaTCAATGCCTTCCTCTACCATTAACcctgccttcctctacctccatcattaTCACGGCATATCTACCATTATCCCTGCCTTCCTCTACCATTATCACTGCCTTCCTCTACCATTATCcctgccttcctctacctccatTATCactgccttcctctacctccatcattaTCACTGCATATCTACCATTATCactgccttcctctacctccatcattaTCACTGCCTTCCTCTACCATTATCACttccttcctctacctctaccattaTCACTGCCTATCTACCATTATCCCTGCCTTCCTCTACCATTATCcctgccttcctctacctccatTATCactgccttcctctacctccatcattaTCACTGCTTTCCTCTACCATTATCCCTGCCTTCCTCTACCATTATCACttccttcctctacctctaccattaTCACTGCCTATCTACCATTGTCACTGCCTTTCtttccttcagtctctctccctatcgctctccctttttctttctctctgtatccacATTTTCTCTCTAAATCTGCTATCTCTGCAGCTCTTACCATTGGCCACTTAACAGATGCAAAATAACTCCTCTTAAATGAATTGTCATTCCAGACAAAAGCTGTCGTCGTGATTGATGTGGCAGTTGACAAAATGTGCAAGTAATGCCGACCGCCCCCAGAACCCCACCCACGTCCAGTATGTCCTTCCTACCCTAGAGAAACCTGAGCCATATCCCTGTCCCCACTGCTATTTATGTTGAACTCAACCATGCTAGGATTTTAGATGTAGTTTTCATTCACAGATCATTCATGTATGTTAATAACTGTCTATATGTGCCCATAACTTGTTGCACTTTGACCTTGAAAATCTAAGATATGAAAGAAAATCAAACAACAAGAGCTCAAATCAGCCGTCTGAACTTGCACCTGATTTGTCCCTTCACTCATAAACCAAACCATAAACATAATATGTACAAATACCACTTTGTTCTCTTACACTTTAACATTTTTTTACAGTTTGTTTTCTATGTGTCTTTTGTTCTTTTTCTGAGTCCCGGTTCTCTGTCCAGTCCCCTGTGATGGACCCCAGTCTATAACCCCGGAGTGTGATCATCATCATCCCAAAACAAGACAGGAAACAAAACAGGAAAAACATCCCACtaggtgtgttgtttgtgttacATGTGAGTAATGTTTATCAAATGTTTTTCGACTCAAGTTTTAGAATGTATCCTCTGTGCACCGGCGACATGTCAGGTGCCTGCTGATGATTAGTCTCTCCATTGCCATTGTTGTTTTCAACGTCAATGCTTTCCTAGCGTCGTCTCAACTTCGGTAACAGTTTTGTTCCTCACGAATGTCCAGAGTTTGACGTGTCCCTGTGTTCAGTTGTGCAGTTGAAAGATCTGAAACGTGCGTACAAGGTTTTTTTTTCCACCTTTGACCTACAGTATGTCAGTCTGACCCCCCTTCATACCCCCTGCCCCTCAACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1013548 lncRNA downstream 151415 42660834 ~ 42661172 (-) True G890906
TU1013547 lncRNA downstream 152086 42660302 ~ 42660501 (-) True G890905
TU1013545 lncRNA downstream 153592 42658791 ~ 42658995 (-) True G890903
TU1013542 lncRNA downstream 157166 42655197 ~ 42655421 (-) True G890900
TU1013540 lncRNA downstream 162596 42646580 ~ 42649991 (-) True G890899
TU1014050 lncRNA upstream 23381 42852078 ~ 42852558 (-) True G891338
TU1014051 lncRNA upstream 24105 42852802 ~ 42853366 (-) True G891339
TU1014060 lncRNA upstream 38102 42866799 ~ 42869388 (-) True G891343
TU1014073 lncRNA upstream 54556 42883253 ~ 42886001 (-) True G891356
TU1014102 lncRNA upstream 98803 42927500 ~ 42927709 (-) True G891384
XM_036990358.1 mRNA downstream 104869 42650285 ~ 42707718 (-) True LOC110533935
XM_021618523.2 mRNA downstream 196040 42608587 ~ 42616547 (-) True LOC110533934
XM_036934573.1 mRNA downstream 219476 42589581 ~ 42593111 (-) True LOC110534922
LOC110533933 mRNA downstream 229279 42574773 ~ 42583308 (-) True LOC110533933
XM_036990356.1 mRNA downstream 259314 42544611 ~ 42553273 (-) True LOC118966777
LOC110533115 mRNA upstream 24701 42853398 ~ 42859770 (-) True LOC110533115
XM_036934574.1 mRNA upstream 34518 42863215 ~ 42866115 (-) True LOC110533116
XM_036990366.1 mRNA upstream 205299 43033996 ~ 43038340 (-) True LOC110533943
XM_021618531.2 mRNA upstream 218958 43047655 ~ 43056228 (-) False LOC110533944
XM_021618532.2 mRNA upstream 218958 43047655 ~ 43056228 (-) False LOC110533944
TU1012992 other downstream 734640 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 822786 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 828170 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2265220 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 2918884 39854966 ~ 39893703 (-) True ksr1a
TU1014179 other upstream 230313 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 364985 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 854877 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 881788 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1370699 44199396 ~ 44209264 (-) True LOC110533117

Expression Profile