RNA id: XM_036990366.1


Basic Information

Item Value
RNA id XM_036990366.1
length 1930
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110533943
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43033996 ~ 43038340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctccttctcgctctctctctcactccctctttatgCCTCTCCAGTGgctccctccccctgtcctccagctctcccctctcttgctcccatctctctcttctggtTTACCCTCTTACTGTGTCTGCTCTCGGCATCATGAAGTGTGAGCATTGTATCTGGGGTCTCTCTGTGCTCCTGGCTCTATGTTTAGGATGGGCACAGGGCCAGAGTCAGAGGCAACCAGAGACTAACTACACCAGGCCTGTGTTCCACTGTGGGGGAGACATGGTTGCAGACTCAGGCTTTGTGGGCAGTGAAGGATTTCCAAACTACTACAAACCCAACAGCAAATGTACCTGGCGCATTACAGTCCCAGAGGGCAATGTGGTCATGCTCTCTTTCCGCATCTTTGACCTGGAGGCTGACCCCATGTGTCGCTATGACTACCTGGATGTGTACAATGGCCACTCCATCATGGTGCAGAAGCTGGGGAGGTTCTGTGGAACGTTCAGGCCTGGTACACTCAtctccaccaccaacaccataATGCTGGAGATGGTGAGCGACTCTGAGACTGGAGGGAGGGGCTTCCTGGCTTACTTCAATGGAGGAAAACCACATGTGGATGAGCCCCAATTCTGTGGAGGAAAGATGACAAAAGCCCAGGGTGAAGTTAAAACACCTAACTGGCCAGAGAAGAATTACCCAGCAGGCATCAGTTGCTCCTGGCTCATCACAGTAGAGCGGGATCAGGTGATTGAGGTGAAGTTTGATAAGTTTGATGTGGAGTCAGACAGTTACTGCCGCTTTGATTACGTGGCCTTCTTCAACGGTGGAGAGAAAGATGACTCTCGACGCATTGGAAAATACTGTGGAGACGTCAGCCCCCAAACCATTGTGACCAATGGGAACGTGCTCCTAGTACAATTTGTGTCTGACCTCAGCGTGACCTCTGATGGCTTCCTGGCCAGTTACACCAGCATCCCCCGCGGATCCAGAACCCCCACAGTAGACAACACAGGATCAGGACCCCGTAAAGAGTCAGTCCCCAGGAagactgttgttaaacccatccTGCCTGAGAGAACagtcatcaccaccactaccacccaaccacccactaCAACCAGACACCAGGCCCCCCCAACCCCACAGCCCCAGGAGCCCACTGCCAAGCCCAAACCAATCAAACCAGTCAGGACCCGCCCACCAAACAAGCCAGGCCCAGACAGGGTCAGAGTTACTAAACCAGACATCAAGAAGCCAGTTCACTTGAACCCACTGTGTGCAAAGGCATGTAAGAGGGATGGAAATATCAAGAGCAGTTTCTGTGCCAGTGAATTTGtgatcACGGGTAAGGTGACAGCGCTGACCCCTGGTCCTCAGGGCAGTGTCTATATCAGTGTGTCTCTCATCAAGGCCTACAAAGCTGGCCAGCTGACCATCACCCAGGCTGGAGAGAACATGTCTGTCAAACTGGTGTCAGCCTGCAAGAAGTGCCCTATCATCCGCAAAGGAATGCCTTACATCTTGATGGGCCAGGTTGATGAGGATGGGCGTGGAACAATGGCTCCCGGGGCTTTCACTGCCCCATATAAGGCCCCACATCACAAACTGCTGACCAATATTAACAACCAACCATGCTAACCTCACACCCCAGTCCACCAATCAGGGAAATTCAGCCTCGTGCATGGATACCATGACGAGCAAGGTTACGATGacccaaaaaatgtttttattcttGAGGAGTACTCAATGAAGTGAATTATCTTGTTTTTTCACTTAATGTTTGATGACACTAACTTAATTGCTCAAATCTCCTTTCATTGGTCGCTCACAGGTTCAGATTAAATGACAAGCATCACATAACAGTTTGACCCACCTCATAATAGggctatatattatattatttttgtAATTTATGTCTCTCAATAAAGGATTTATAATACA

Function

GO: NA

KEGG:

id description
K24361 PCOLCE; procollagen C-endopeptidase enhancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014160 lncRNA downstream 13556 43014701 ~ 43020440 (-) True G891440
TU1014093 lncRNA downstream 25397 43004237 ~ 43008599 (-) False G891376
TU1014094 lncRNA downstream 25397 43005933 ~ 43008599 (-) True G891376
TU1014111 lncRNA downstream 90731 42942981 ~ 42943265 (-) True G891393
TU1014105 lncRNA downstream 103791 42929939 ~ 42930205 (-) True G891387
TU1014191 lncRNA upstream 37188 43075528 ~ 43075844 (-) True G891469
TU1014205 lncRNA upstream 66214 43104554 ~ 43105552 (-) True G891483
TU1014144 lncRNA upstream 69706 43108046 ~ 43111579 (-) True G891425
TU1014210 lncRNA upstream 103498 43141838 ~ 43142068 (-) True G891488
TU1014212 lncRNA upstream 105583 43143923 ~ 43144798 (-) True G891490
XM_036934574.1 mRNA downstream 167881 42863215 ~ 42866115 (-) True LOC110533116
LOC110533115 mRNA downstream 174226 42853398 ~ 42859770 (-) True LOC110533115
XM_021618526.2 mRNA downstream 205299 42812587 ~ 42828697 (-) True LOC110533936
XM_036990358.1 mRNA downstream 326278 42650285 ~ 42707718 (-) True LOC110533935
XM_021618523.2 mRNA downstream 417449 42608587 ~ 42616547 (-) True LOC110533934
XM_021618531.2 mRNA upstream 9315 43047655 ~ 43056228 (-) False LOC110533944
XM_021618532.2 mRNA upstream 9315 43047655 ~ 43056228 (-) False LOC110533944
XM_021618533.2 mRNA upstream 9315 43047655 ~ 43056228 (-) False LOC110533944
XM_021618534.2 mRNA upstream 9315 43047655 ~ 43056228 (-) True LOC110533944
XM_021618535.2 mRNA upstream 19271 43057611 ~ 43070230 (-) False LOC110533946
TU1012992 other downstream 956049 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1044195 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1049579 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2486629 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 3140293 39854966 ~ 39893703 (-) True ksr1a
TU1014179 other upstream 20670 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 155342 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 645234 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 672145 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1161056 44199396 ~ 44209264 (-) True LOC110533117

Expression Profile