RNA id: XM_021618534.2


Basic Information

Item Value
RNA id XM_021618534.2
length 5607
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC110533944
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43047655 ~ 43056228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGAGCAGACAAGGGGCGTCATCACGTGTGCTTTTGCGTGTTCCCTCCCAGTACTGCGAATACAATGTGCggttttgttcagtgtgtgtgttacttgtcTTGCAGTCTGTTAACATTGGACCAGGTCGCTGAAGATGTCATTTCGGGTTTCtgcaattaaaataataataattgtaaacCTACTGAATACACTGTGGAATAAGTTTCAATAGTGTTTGCCTCGGAACGTATTTTCTCTTCATGGAATAAGGTATCCTGCCAAATCATCTAGTGCACTGAGTGTGGACACACGAGGAAGAGCAAACGGACAAAGAAAGGCTCAGCCCTCTTCTCTTCAATTGGCCTGTCAGGTTCATAAGCTTTGACCTGACAAAAAAAACTCAAGATCAATGAGATACAGTCCATACTTTGTCCATATCTTCTCTCTCATTTTTGCTTTTCCAAGCCATGACTCAATCTAAGTTTAGTAGCCCCACTTAGTGGCAGGGTATCACAGCTCTGTTTTGACAGATACTTTTTGTCATACAGCAATAGTCAATCACTCATACTGCTTATTATGAGTGATGAGAATGCAAACACCACTTCTGGAAATGACACTAGTGGAGTAAGTTTAGCAGAAGATGCGGTGGCAGGACAAGAGGCAGGCTCCCAGTCCGCTGAGTCTGGACTGAGTCAGACTGGCAGCTCCAATGGAAATGGACAGAGGACTCGGTCTGGGGGCAAGTCCTCAAACTCTGATGACACCGATGCCCACTTGAGCGGGAACGACTCAGCCGAGAGAGAAGTGGAAGGTCACATGGGGCATGAGGCATCAACCTGCAGCAGCTCCCATAATGGGAAGGACTCTGCCATGGAGACAACCGAGAGCAAAAGCTCTATGGTCTACAGCCTGCTGAGTGGCAGCTCAGAGCAGGACCACCCATCCACCAGCGGCTGCAGCAGTGGCCAGCCGGCCCGGCTGCAGACCCAGAGAGAGTTGCTCAAGGCCCTGAAGGAGCTGAAGATCCGCATGCCTGCAGACCACCGGACAAAAGGCCGCTCCAGCACTCTGGCCTCCCTGCAGTACGCTCTCAACTGTGTCAAACAAGTCAGAGcgAATCAGGAGTATTACCACCAGTGGAGTGTGGAGGAGAGCCACGGTTGCAGTCTGGACCTCTCAGCCTTCACCACAGAGGAACTGGACAACATCACCTCTGAATACACACTCCAGAACACGGACACATTCTCTGTTGGAGTGTCCTTCCTCTCTGGGAAGGTGGTGTACATCTCTCCCCAGGCCTCTCCCATGCTGCGCACTAAACCTGAGCGACTACAGGGAGCGCTCTTCTCTGAGCTGCTGGCCCCCCAGGACGTCAGCACTTTCTACAGCAGCACGGCTCCCTGCCGCCTGCCCCCCTGGGCCTCCTGTACTGGCTCCAtGACCTCCCCTGTGGACTGCACCCAGGAGAAATCCATGTTCTGCCGCATCAGTGGTGGGAGGGACAGCGAGGGGGAGGTGCGGTATTACCCCTTCCGTATGACCCCCTACCAGCTGACACTGCGGGACTCTGATATGTCTCAGCCACAGCCCTGCTGCCTGCTCATTGCTGAGAAGGTGCACTCAGGATATGAAGCTCCCCGTATCCCAGCTGACAAGAGGATTTTCACCACGAGCCACACCCCCAGCTGTCTCTTTCAGGAAGTCGATGAAAGGGCTGTGCCgttgctaggctacctgccccaggACCTGGTTGGGACCCCTGTCCTCATGTACCTCCACCCTGATGACAGGCCTGTCATGGTGGCCATACACAAGAAGATTCTCCAGTCAGCGGGCCAGCCCTTTGAACACTCGCCCCTTCGTATGTGTGCCCGGAACGGGGAGTATCTCACCATAGATACCAGCTGGTCCTCCTTCGTTAACCCCTGGAGCCGCAAAGTGGCCTTCATCGTTGGTCGACACAAAGTCAGAACGAGTCCCCTGAACGAGGATGTGTTCACGCCTACTGTGGAGGTGGAGGCGCGGGCCATGTCTCCAGAGATCCCCAGGCTCAGTGAGCAGATCCACCGCGTGCTGGTGCAGCCTGTCCACAGTGGTGGCTCCCAGGGCTACTGCAGCTCCCACGGATCCCACCCACAGAGGCCCAGCCCAGGCTCCTCGTCAGGCAGCAACAGCCCCTCCACCAAGGAGCTCATCCTGAAGACCATCCAGAGACCACAGATGACATTCCAGCAGATGTGTAAGGACGTCCACATGGTGAAGACCAATGGTCAGCAGGTCTTCACCAAGTCCCGCAACCGCCCAGCACTCCGCAAACACGCCAGCACTGGAGCCCTGGTGGTGCCAGAGAATTTAAACAAGGACTTGGGACCTATTGGAGCTCTGGGGCCAACTAAAACCCTGGCCTCCGTGCAGTCAAGGAAAGACCCGTCAGCCAACTACTCCTACCAGCAGATCAACTGTCTGGACAGCATCGTACGCTACCTGGAGAGCTGCAACGTCCCCAACACAGTGAAGAGGAAATGTGGCTCCTCCTCCTGCACCACGTCATCAACGTCAGACGATGACAAGCAGAGGGAGTTGCCTGGAACAGCTAAAGACCTCGAAGGCCCCCAGAGTAATGAAGGGTCTAAAGGGGGGCCACAGATGAGCCCTCTGGCGCTGCACTGCAAGGCTGAGAGTGTGGTCTCTGTCACGTCCCAATGCAGCTTCAGCAGCACCATTGTCCACGTAGGTGACAAGAAGCCCCCAGAGTCAGATATAGTTATGATGGAGGAGACACCAGCCACCCCCACTCTCACCGTCACCTCTCCAGCCCCAGCCACTAACAACGCCATCACAATGTTAGTGACCCCCCGGCCGTTGGCCCTGCCCAGCCCGGCACCACCCAGCCCTGCCCAGCCCGATAGGGACGGCCGCAGGTCAGCTGGATGCTCAGGCCGCCTGGGTCTGACCAAGGAGGTGCTGTCTGCCCACACCCAGCAGGAGGAACAGGTGTTCCTGAGCCGGTTCAGAGACCTGGGACAGCTCCACGTGCTGGACCCTGGCCCTCCTCCTCTGAGAGGACTCACCACCACACCCAAAGgAGTGCACAGCTCGAAGGACTACCCAGCAGGTGGCCATGGACGGAGGAGGGGCCGCGGGGGAAAGAGGCTGAAGCACCAGCAGGAGGGCTCCCAGCGTGGGATGAACGGTAGTTTCAGGAGGGAAGGGCAGGGGCCCCAAGGCCTCACGTTCCCCATGGGTCAACCCCTGATGATGCAGGGACCCCTGACCTCGTCCTCTTCCTGGCCCGCCTCTGAGGCCAGTATCCCTCCTGCCGTGGCCCAGTACCCTCCAGGAGTCCTGCCCTTCTTTCCACTCTACCCCAGCGTGCAACAACAAGTCCTGGGCCACACCGGCGTGAACCCCAATGCCATGCAGATGGGCTACCCCAGCCCCCAGCCAGGCTTACCGTACCCCATGCATACCATGCCGTTGGCTCCCCCAATGATGGTTGTTCTGCCCAACTACATGTTCCCTCAACTCAACGGAGGTGTATCACCGCTCAATACCACCATGCCTCAGTATAACACAACCATACCGAACCTTTGCCCCGGTATCCCTGGTATGGCACAACTTAACCAAGCACTACCGCTGTTCAAACAGACTATCCCACTACCACAACTCAATCCTGGATTGGCTCAGTTCAACCCCGCTATGATGCAGATGAATGGCATGCCTCGTGTTAGTCCCGCCCTAGCTCAACTCAACCCGTCACAGGTCAAACCGACTTTGTCGATGATCCTCCAACACTGTTACGATCCCCGCCCAGCATTACCTTTCCCAAATCCCATTCCGATTCCCAGCTTTGCCTTACCCGAGATGGATCCCACCTTTGTCCAACGTGGCAACTCCCGCTCCAGCACCCCTCAGTCCACGTGCCAAGCCCCCCTGGAGGGGACAGACTCGCCCCTCTTCCAGTCACGATGCTCCTCCCCCCTCAACCTGCTACAGCTGGAGGAGTTGCCAGGCAACCGCCAGGAGGGCATGTCGACAGGGGCACAGCAGACATTGCCCCCACCTGGCTCGGTATCACAGTTCGGAGGTCAAGGCTCTGTTAAGCGAAGCATGAAGGGTGACGACAGAGAGGACGATAACGATAATGCTGATGACCAGGACGCAATGTCCACCTCCAGTGACCTGCTAGACCTACTGTTGCAGGAGGACGCCTGCTCAGGCACCGGCTCGGCCGCCTCTGCCTCCGGGTCCTCAGGCTCTGGCTCTAATGGATGCAGCACCTCAGGGAGTGGCACAAGAAGTAGCAACACCAGCAAATACTTTGGCAGCGTTGACTCGTCGGAGAACGACCATTCCCATAAGCAGGCACCAGGGGGGGCTGAAGAGGCCCAGCTCATGAAATATGTCCTTCAGGACCCTATCTGGCTCCTTACGGCCAACacagatgacaaggttatgatgACGTACCAAATGCCCACCAGGGACAAGGAGACTGTTCTCAGGGAGGATGGTATGATACTGAGGGCGGTGCAGAAACAGCAGCCGCGCTTCACtgaggagcagaagagagagcTGATCCAGGTCCATCCCTGGATGGGCACCGGACGCCTGCCACAGGCCATCAACAGCCCTACTTGTACAGGGTGCGGTTCTCCTCCCACTTCCTCCGCCCCCCGGCCCTTTAATGTGGAGCTGCAGGACATGGATCTGACACGGGTCCTCCAGCTACAGGAAGAGACCCCTGTTACCATGGCAACAGACACACATGACACCTCCATCCCACCACCACAAGCACCCCAGACAGAGACTAAGGGGGGTGAGCGGCAAGGGGAGCAGGAACGAGATGGTAAGGACACCGGAGTGAAAGAGTTGGAGGTGACGTCATCATCCGGAACAGAGAAAGGGGACTCTGGCAGTTAACGGCAACCAAGGAGTTCTATATGGCCAATGACTCTAAAACGCAATGCATTGGGACAACCGGGAGCCAAGGTCACTGTTAATGTGTTGTGTTTGAACAAAGAAGAGAACATGGATAAGGAGTCAAAGAATACCTGATCCTGTTTAAAGACATAGAGAATGTAGCTCAACGTATATGGAATCTAAGGTGTAAATATTCTATGTATTTTAAGTGTAAAAATGGAAAGAGAAGCCCTTAGTAAATATTTAATTGGCATGTTTGGTTCCCTGTCTAAGGAAATTCACTGCTTTGGGACTTTTCTCCCCTTATAGTGACACTTTGATAGTTTTACAAGTTATTGTGTGTATCAACGCAATATAATTTATTTGTCCAATGTCCATATTGGAAAATGATGTCAAATCTATTGTCAACCATTAAATCGCAAATTCATTTAGAAAAATATATTTGGTAGAATACTTATTTCAAGTATTTTCTAAGTCATTTCTGATATTGTACCATGTGTATATTACAGTATACCACCGACCAGGAGCTGACATACTACAGTTTTCTGTGGGCTGTTTTGTCATGTAATGTTCTGAATGGTTCATTTCTTTCATAATGTAATTGTACAACACAATCGTTGTAAAAATATGTAAAGTTTTAGCCATTATTGGGAAACTATCCTATTTTTTTAATCTCCAGAGAAATACATAAAGACCATGTTAAAA

Function

GO: NA

KEGG:

id description
K21944 PER1; period circadian protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014160 lncRNA downstream 27215 43014701 ~ 43020440 (-) True G891440
TU1014093 lncRNA downstream 39056 43004237 ~ 43008599 (-) False G891376
TU1014094 lncRNA downstream 39056 43005933 ~ 43008599 (-) True G891376
TU1014111 lncRNA downstream 104390 42942981 ~ 42943265 (-) True G891393
TU1014105 lncRNA downstream 117450 42929939 ~ 42930205 (-) True G891387
TU1014191 lncRNA upstream 19300 43075528 ~ 43075844 (-) True G891469
TU1014205 lncRNA upstream 48326 43104554 ~ 43105552 (-) True G891483
TU1014144 lncRNA upstream 51818 43108046 ~ 43111579 (-) True G891425
TU1014210 lncRNA upstream 85610 43141838 ~ 43142068 (-) True G891488
TU1014212 lncRNA upstream 87695 43143923 ~ 43144798 (-) True G891490
XM_036990366.1 mRNA downstream 9315 43033996 ~ 43038340 (-) True LOC110533943
XM_036934574.1 mRNA downstream 181540 42863215 ~ 42866115 (-) True LOC110533116
LOC110533115 mRNA downstream 187885 42853398 ~ 42859770 (-) True LOC110533115
XM_021618526.2 mRNA downstream 218958 42812587 ~ 42828697 (-) True LOC110533936
XM_036990358.1 mRNA downstream 339937 42650285 ~ 42707718 (-) True LOC110533935
XM_021618535.2 mRNA upstream 1383 43057611 ~ 43070230 (-) False LOC110533946
XM_021618541.2 mRNA upstream 32058 43088286 ~ 43090931 (-) False LOC110533948
XM_021618542.2 mRNA upstream 32058 43088286 ~ 43092420 (-) False LOC110533948
XM_036990370.1 mRNA upstream 32058 43088286 ~ 43092420 (-) False LOC110533948
XM_036990368.1 mRNA upstream 32058 43088286 ~ 43093264 (-) False LOC110533948
TU1012992 other downstream 969708 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1057854 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1063238 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2500288 40496714 ~ 40547367 (-) True LOC110533878
TU1010435 other downstream 3153952 39854966 ~ 39893703 (-) True ksr1a
TU1014179 other upstream 2782 43059010 ~ 43070158 (-) True LOC110533946
TU1014242 other upstream 137454 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 627346 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 654257 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1143168 44199396 ~ 44209264 (-) True LOC110533117

Expression Profile