RNA id: XM_036990368.1


Basic Information

Item Value
RNA id XM_036990368.1
length 2339
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110533948
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43088286 ~ 43095752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCAGAGCGCGACCACTGGAGTAGATCACATGGGGGCAACATGGGAGGTGACATACAGAAAACAGGCAGGGCAAGAATGTCAACCATATTTCTGTAAAGGATTGTACAGTGGAGGATAGTAAGATCAGATGGCAAACAGTACATGAGAGGtatttgaaatgtgacatgaAGTGAATGTTTAGAGGAACAAGTCAGAAATAAAGTGTTTGTTTGGACCCTATCTATCTTGCATTGAGACTCTGTTTTGTTGTCGAATAGGAAAGAATGTAGTGTCACAGAATGAAGTGAACTCAACTGTAGCTTGAAGGTATTTTGTAATCAAGACCCCTCGGTCTTGAGGAGGATAGCAGTCTCTCTTAGCTACAACATCCCAACTTGTGGCCAAGGCCAGTGACGAATAGCATATTTTGAACATCATGCCATATAGATTTTTACActgtatcaatcaaatgtattttataaagcccttttttacatcagcagttgtcacaaagttaTTTAGATACCCAGCCTAAATACTATTGAACATTGTGTTTTATCCCTAATGTTGAGCATTGGGAGAGGTGTCATGCGTGGCTGGGAATGAATACCTTTAGCAGTATTATGATGAAGTGCTCCTAAAggatataatatgacatttccaCTGTCTGCCATATAATGGTGGTCATGTAGTATGTTAATGTGTGCCCCAAAACACAACTGCTAATTTTCCTTGCAATGTATGTCTTTGAAGGGGGTGAGGATAGACTGGTCAGGACATGCTGGCCATTAAAGTGGTTTATAATCCTCTGCTGTATCACTACAGGATATTCTTTGATTAttatgGTGGCAAGGATGATTTCTCAGGTTCTCCTGACGGGGACACTATGTTGCCTACTCCCAGGTTTGCTGGATGCTACACCACTGAAGGCTAGAGCTGTGAGGGAGGTCAGCATCGACTCTGCCCAGGCTCGTGGCTTCCTGTCTCAGTCACGCCCCAAACGGAACGTCGATCACAAGTGGCACCGCGGCACGCCTGATTTCCAGTCCTACTACAAATTCTACAACAGCATCGGCCATATTGAAGGACTGTATGAGATTGACAGGATCAGGATGCTGTATCAGCAGATGCGTCACCTGGAGCAGGTCTATGGGCCAGACGCCTCCAGCTACCAGAATGCCCTGGGTGTGATaaccccaccacccaccaccataGCTCCTACTACCACCACACTGCCTGCTACCACTCAGCCCACTCCTACTACCCAAGCACCACTTTCTTTTACTAAGACTGAAGTCCTGTATCTGTGTAACCCCAAAGACCCCCTCTGTAAAGCTCACATCGTCTACCTGCCTGCAGGGGCCATCCCAGTCCTCTGTGACCCACGCTACAACCCTGCCTGCAAACCCCAAACTGGTAAGGTGGTCATTGCTGCTGTACCTATGGAGCCAGCTCCTGCAGCACCTCTGGAGCCAGCTGTTGAAGCACCACCTCCACGATCTCCTAAGAAGTCTCTCCaacctcctcgtcctcctcccatCGTCATTAAAGGGATGGAGTATGACTGTGACCCTTACTGGGACCCTGACTGCCTGATCGATCACCCACCTCGCCCTGTCAAGGCGACTGAGCCACTACCACCACCCCATACACTCCCCGTTGTTGTGGAGAAGGAGGTGAAGGAAGACGTTGCTCTTGAGGAGACCAAAACACCTTTTGACCTGCGTGATTTTCAGCATGACATATCTTACCGCTATTCTGACCAAGCCCCTGACCCGCAGTAGACGAATAAAACAACATAAAATTGACATACAGTAGTGTTAGTTTACAACAGAAGGTCAGTAAACAAATACAGGTAGAACAAAACCATAACTTTTTTATTAATGCATTTTCCCTCCAAGTATGACACTTTTTCACTTCATCAGAGAATATGGTTTCAGTTTTAGAGACAAGCCTGACAAAATCTTGTATTCAACGTGTGTATGTGAGCctgttattttgttatttgtcTGGGTTGTGGACTCTAcgaggtgttgaaagcgttccacagacacagttgtgtcatgttggctggaagtccttttgatacacacgggaaactgttgagcgtgaaaaacccagcagcgttgcagttcttgaaacactCAAAGCGGTGTTCCTGGCTccgactaccataccccgttcaaaagcactcaaatattttgtcttctccattcaccctctgaatggaacacatacacaatccatgtctcaattatctcaaggcttaaaaatgattctttaacccgtctcctccccttcatctacactgatttgaagtggatttaacaagtgacatcaataaaggatcatagcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014191 lncRNA downstream 12442 43075528 ~ 43075844 (-) True G891469
TU1014160 lncRNA downstream 67846 43014701 ~ 43020440 (-) True G891440
TU1014093 lncRNA downstream 79687 43004237 ~ 43008599 (-) False G891376
TU1014094 lncRNA downstream 79687 43005933 ~ 43008599 (-) True G891376
TU1014111 lncRNA downstream 145021 42942981 ~ 42943265 (-) True G891393
TU1014205 lncRNA upstream 11290 43104554 ~ 43105552 (-) True G891483
TU1014144 lncRNA upstream 14782 43108046 ~ 43111579 (-) True G891425
TU1014210 lncRNA upstream 48574 43141838 ~ 43142068 (-) True G891488
TU1014212 lncRNA upstream 50659 43143923 ~ 43144798 (-) True G891490
TU1014213 lncRNA upstream 52018 43145282 ~ 43145833 (-) True G891491
XM_021618535.2 mRNA downstream 18056 43057611 ~ 43070230 (-) False LOC110533946
XM_021618531.2 mRNA downstream 32058 43047655 ~ 43056228 (-) False LOC110533944
XM_021618546.2 mRNA upstream 25304 43118568 ~ 43140702 (-) False LOC110533951
XM_021618545.2 mRNA upstream 25304 43118568 ~ 43140704 (-) False LOC110533951
XM_021618544.2 mRNA upstream 25304 43118568 ~ 43140706 (-) False LOC110533951
XM_021618548.2 mRNA upstream 25313 43118577 ~ 43140699 (-) True LOC110533951
XM_021618550.2 mRNA upstream 76461 43169725 ~ 43174015 (-) True LOC110533953
TU1014179 other downstream 18128 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1010339 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1098485 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1103869 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2540919 40496714 ~ 40547367 (-) True LOC110533878
TU1014242 other upstream 100418 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 590310 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 617221 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1106132 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 1212955 44306219 ~ 44308933 (-) True LOC110534000

Expression Profile