RNA id: XM_021618548.2


Basic Information

Item Value
RNA id XM_021618548.2
length 2132
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110533951
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43118568 ~ 43140706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACAGCTCTACCACTGAGGAAGCTGCAGTGGGCCTGCCCCCTTTAGCAATCGGATGTTTACTTGCTTTGTCAGCTGTGTCCTCGCAGCCTAGCCTACTATAGTCTACCTCCGAATTGATCAGAACCTCGGACTTGAACCCCAGAACAGCAATACATCAGACCGCCAAGGTTCCTTGTCACTAATTTCCCCTTCTCTGCTACAATAGGACCTTGAACAAGGGCGCATTACGTTCACTTTTGTTTTTTGCTAACCAGTAAAGATGACATTAAAATCCAATAAAAACGAACCCGCTGTCATACTTGAGCGGGTGAACAGTGCTCGAACAGCCCTCTCCGACCTGTACCTGGAGCAGCTGCTTCAAAACAAACCAAAGCCAGAAAAGGGGGTTATGCCAGCCTATGAGACAAAAGGAGCAGAAGTATACACCAACGGCAATGCTGGTCACATGAACGGAACTGAGCCAACTAGGATGCGTGAGGTGGCGTTTGAAAAAAATCCCTCAGAGCCCATGgGGGTGACTCTGAAATTTAATGGAAAACAGAAGTGCACTGTGGCCAGAATATTACATGGGGGAATGATACATAGACAAGGTTCCCTACATGAAGGGGATGAAATAGCAGAGATCAATGGAACGAGTGTGGCCAACCAATCTGTCGACCAGCTACAAAAGATCTTGAAAGATACCAACGGAGTAGTCACAATGAAAATCATCCCCAACCAGCCAAGGTGCTCTCTTGTGTGTGAGACGTACATGAGGGCTCAGTTTGACTACGACCCTGCCAAGGATGACCTCATCCCATGCAAAGAAGCAGGGCTGAAGTTCAAAACGGGCAACATCATTCAGATCATCAACAAGCATGATCCAAACTGGTGGCAAGGCAAGGTGGACATCTCTACTGCCGACTTTGCTGGAATCATCCCCTCCCCAGAACTTCAAGAATGgCGGGTGGCAAGTAAAAGCAAGGCCACAGAGGGCACTCAATCCTGCAGCCCCTTTGGAAAGAAGAAGAAGTGCAAAGACAAGTATCTGGCCAAGCACAGCTCTATCTTTGACCAGTTGGACGTGATTTCTTATGAAGAGGTTGTCCGGCTCCCTGCCTTCAGCAGAAAAACCTTGGTGCTTATTGGTGCACCAGGTGTAGGAAGGAGCCACATCAAAAGCTCGTTGCTGACCAAATACCCAGAGAAGTTTGCCTACCCTGCACCACACACCACCAGACCCCCACGTAAGGACGAGGAGAACGGGCAGGAGTACTACTTCATCTCCAATGACGCCATGACCAAGTGCATCACTGGGAATGAGCTGCTGGAGTATGGCAGCTTCCAGGGGTTCATGTTTGGTACCAAAATGGAGACTATCCAGAAGATCCATGAGCAAGGAAAAATTGCCCTGCTCGATGTGGAGCCACAGACATTGAAACTTTTGCGGACGGCAGACTTTGCGCCTCTAGTGGTGTTCATTGCACCTACCAACTCAGCTACCCAGTCGGAAGCTGTGCAGTCGATCCAGAAGGAGTCAGATGCCATCCACTCCACCTACAGACACTTCTTTGATGTGCTGCTGGTTAACAACGATGTTGATGAGAGTGTGAAAGGAGTGGAGGCGGCCATAGAGCAAGCCACTTCCACCCCACAATGGGTGCCGGTTTCCTGGGTCTACTGACCCGTGTACCCCCGAAGAACAGTCTAACAAAACTGTTTTAATTTCACAAGACCTGGCCACGCATTACTGATACACCACCAGGTTTGGGTAGCAGCTAATCGCTATGGTTACTGTCAATAAGTTTTGCACAAGTGCATAAAAAAAAAGCAATACAGAAGATACCATTTTATTTCAGAAAGTAGAATGAAACTCACAAAGGGATATTTTAAATCTTTGTAAGAGCTTAGTGCTTCTGGCTTTTCAGGTGCTGAATGATGGGTGCCATATGACTGCAGCTGATTATTAGCATGTGAATGCATAGAGGACCACTACTGTGAACGTAACACTTTACCTGACAGGGTTTCATCATCAGTATCCTTATCTCGGGTTGAATTGTAAACAGGGTGTCGTGAAATGTTACATAACTATATTGGCCATATGGTCATGTATTAAAATACAGGGAAAACGTGTGTTCTACATTAAATTG

Function

GO: NA

KEGG:

id description
K21880 MPP1; MAGUK 55 kDa erythrocyte membrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014144 lncRNA downstream 6998 43108046 ~ 43111579 (-) True G891425
TU1014205 lncRNA downstream 13025 43104554 ~ 43105552 (-) True G891483
TU1014191 lncRNA downstream 42733 43075528 ~ 43075844 (-) True G891469
TU1014160 lncRNA downstream 98137 43014701 ~ 43020440 (-) True G891440
TU1014094 lncRNA downstream 109978 43005933 ~ 43008599 (-) True G891376
TU1014210 lncRNA upstream 1139 43141838 ~ 43142068 (-) True G891488
TU1014212 lncRNA upstream 3224 43143923 ~ 43144798 (-) True G891490
TU1014213 lncRNA upstream 4583 43145282 ~ 43145833 (-) True G891491
TU1014217 lncRNA upstream 10000 43150699 ~ 43151039 (-) True G891495
TU1014221 lncRNA upstream 14019 43154718 ~ 43154922 (-) True G891499
XM_021618540.2 mRNA downstream 22825 43088286 ~ 43095752 (-) True LOC110533948
XM_036990371.1 mRNA downstream 22866 43088286 ~ 43095711 (-) False LOC110533948
XM_036990368.1 mRNA downstream 25313 43088286 ~ 43093264 (-) False LOC110533948
XM_021618542.2 mRNA downstream 26157 43088286 ~ 43092420 (-) False LOC110533948
XM_021618550.2 mRNA upstream 29026 43169725 ~ 43174015 (-) True LOC110533953
XM_036990374.1 mRNA upstream 43116 43183815 ~ 43245662 (-) False LOC110533954
XM_021618551.2 mRNA upstream 43116 43183815 ~ 43248006 (-) False LOC110533954
XM_021618553.2 mRNA upstream 393581 43534280 ~ 43542281 (-) True LOC110533956
XM_021618554.2 mRNA upstream 402462 43543161 ~ 43555601 (-) True LOC110533957
TU1014179 other downstream 48419 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1040630 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1128776 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1134160 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2571210 40496714 ~ 40547367 (-) True LOC110533878
TU1014242 other upstream 52983 43193682 ~ 43247635 (-) True LOC110533954
TU1015844 other upstream 542875 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 569786 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 1058697 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 1165520 44306219 ~ 44308933 (-) True LOC110534000

Expression Profile