RNA id: XM_036990374.1


Basic Information

Item Value
RNA id XM_036990374.1
length 8075
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC110533954
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43183815 ~ 43248006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACTTGTGTGTTTCTCAATGTCCCACTGACACATGCAATTAGATGTAAGAGGTGAGTCTTTAGCATGCCAGGTGTAGCCTAATTCAGATCACTTCAAGAAAGCAGGCTCCCAACTCCCACTAAAGCAGTGGTTGTCACCATAGACTTACCAGTTAGAAATATTGAAATGTCATCTTTTAGGTTTGCTACTGAATATTGAGCAAGTTGAAGGCTACAAGTGAAATTTATTCAAAACACCTCCACTGGACAAACCGGAATATCTGTGGCCAAGGCCACGGTGGACAAGTTGCTGAAGGGGTATGACATCCGTCTAAGGCCTGATTTTGGAGGTGCCCCAGTCATCGTAGGAATGAGCATCAACATCGCTAGCATTGACTCCATCTCAGAAGTGAACATGGATTACACCATCACAATGTATTTCCAGCAAAGTTGGCGAGACAAGCGGTTGGCATACgctgagctgcccctcaacctGACTCTGGATAACCGCGTAGCAGACCAGCTGTGGCTCCCAGACACCTACTTCCTCAATGACAAGAAGTCCTTCCTGCATGGCGTGACAGTGAAGAACCGTATGATTCGACTGCATCCTGATGGCACCGTGTTATATGGGCTCAGAATAACCACCACAGCAGCTTGCATGATGGATTTGAGGAGGTACCCCCTCGACGAACAGAACTGCACCTTGGAAATCGAAAGCTATGGGTACACCACAGACGACATAGTGTTCTACTGGCACGGAGGGGACAATGCGGTGACGGGGGTGGACAAACTGGAGCTTCCCCAGTTCTCCATCGTGGCGCTTCGGCTGGTGTCCAGGGAGGTCAGGTTTACCACAGGTTCCTATCCCAGGCTATCACTGAGTTTCAGGATTAAGAGGAACATTGGCTACTTCATCCTGCAGACATACATGCCCTCCATCCTGATCACCATCCTCTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCTGCAGCTCGGGTGGCCCTTGGTGTTACAACGGTGCTCACCATGACAACCATTAACACCCACCTTAGGGAGACCCTCCCAAAGATCCCGTATGTGAAAGCCATCGACGTCTACCTCATGGgctgttttgtgtttgtgttccTGGCCCTGCTCGAATATGCCTTCGTAAACTACGTGTTCTTTGGCCGGGGCCCCCAGCAACAGAAGAAAATCCACGAGCGGCTGAACAAAACCAACAACGAGCGCCCGCGATACGAAGAGAAGCGCCTGAGAGAACAGGACTCCATTGCCACGCCGTTTCAAACCAACACCCTCAGGTCATATACACAGAGAAGAAATCTGTACCTCGAGGAGCAAAGAAAAGTTGGGGTGGACGCATACGGGAATATCCTGCTCACCACGCTGGAGATGAATAACGAGGTGATGCCGTCAGATGTGGGAAGTAGCGTCAGTGACTCCCGGAATTCAGTGATGTCATTCGACAGCTCCGGGGTCCAGTTCAGGAAGCCCATGGCTCCCCGGGACGGCTTCAGCCACCACTCACTGGACCGCAGCGCTATGCGCAGCAGGGCCAACTGTCGGCTACGACGGCGCTCCTCCAAGCTCAAGCTGAAAATCCCCAATCTGGCAGATGTCAGCACCATTGACAAATGGTCCCGGGTCCTTTTCCCCATCATGTTTGGATTTTTCAACCTAATCTACTGGTTGTACTATGTGAATTGATGTGCATCCCACTAGGAATCATGGGCCATATTTTGAGAGCACATTAAATTGGCTTTGATACAGTTGGAAAATATGTATACACATATACaagttgatacatacagtatgtatatgcatatttctatatattatatttatatatacacgtgtgtgtgtgtgtaaatctgaAGGACTTTTCTCCTGTATAAAGTATTATTAGAATGACTTGAATGTTTAAGAATAATTTCAAGCCTTTGAGTTTCCTTTtccttgtgaaacaaacaaactAGCAAAGAAACGAACAAACTAACAACCATCAGATCCCTTTGGGGGATTTTGGAACTAAAGACTGCATGATATTTTTGCTAAAAAAGAAAGCGAAAGCTCTTGAGAGAAGAGATGTCTCAGTCTCATTGGCTTTTTATTGATACTCCGTAATCGGCGTCCTCTACTGCAGCTCATCAAATCAGGTGACTCGTGTGTTCAGGCATCGGCTGAGTCAAGTCCCTAATATCCAGCCCCCCCCCCGCCCATTTCCCATGGATAACATACACGGAATTCTCCGGTTCGACCCTGTACAGCAACCTTGTTTGGATTATGTGTCGTTCCTTGGCTTTTTTTTCGAGTGACGTTGTTCTCTTTATGGGACATCGGCTCTGGTACAATGCTGGTCTGCGTTTGGGGGGCCATCAGGATGGGATGTTAGACCACTACGTTTCTGAGTCAGTGCAAACTTCTCTTCATTTCTCTATTCATGTTTGTTTTTAGAGCAGTTCCTTGGGGTATTTTCATTATGGTTATCCAGATGATGATTATTgtaattattattttgttttgaAAATACTGGGCTTTTGGGAGTGTGTCACTTAACGAGGTTCTAGTTAATGCATTACTAGAAAAAAAAGTCACAGGTATGAATTGCTCATTTTGATTGTTTAAAAAATAGACATGTAATGTACATTTGGTAATTCAGTATCCTCGTGGACATAGTTGGCAAATATAATTGTGCGTTTTCTTTACCATCCTCCTAGTGCTTCACATGCTCTGTAGATACAGTAATTATTGCCTCATATTCAGCTTTGTGTTCTGTAAGGAAGAAACGATACCTAGAATGAACACATTTGAAGTTATTCCACTATAAAAATGTGAGAAACAATATTGTGTATTAAAAAAGGGATATCGCCATGGTTTATTTGTTTGAGAGTGAAATCAACATATCAGCCCAAAGTTTGACCTGTAGTTGAATGTAATACTCTCTCACTTTGAAACAGTTTTCACCCCGAGAATGTTGGGCACTGATATTATAGTTCCTATGAAACGTGCCTGTCTTAAAATTCGAATGGCCgtgttctcaaattagctttttTATTTGCGGTTGTAGCGGGGAGCGGGATTAGAGGAAGAAAAATAATCAACCTCTCACATCCATTAGCTCTGAAAACACTGCAGATCTACCACCCTTCAAAATGGGCTCCGAGGATCACACCCCAAAGATCAGAAACATCAGCAGAATCTGGAAAAATTGGTTTTCAGTTTTTAGGGGGCAAGACGAGATGTGTGATAAATATAGCCATGAACTAAATTGAGAACCAAAAAGGCCTAGAATCCCTGTGTTATTTTGGGCTTTTGCTCTTAATGTCACTACATTCCATCTGCTCAGATTCACTCACTAATGAGATGTCCACTGCAGAGTTGATGCCATTTTGAGCCACACTGTACCTTCAAAGGACAACCTTGTTTTTCATTATTTGGTTCTGCCTAGAGTGAAGAGAAGAGCAAATGCATTCACACATTTAAACTGGCATTTTCAGGCTATCTCTGTGTTCAAACTAGCATTGCATTGATTCAACAATGCAGTGCAGTGGATTTGAATATTCATGCTAAGGAATGACAATTGCGGTTGTGATTGAAACATGCAGCGCATTGTTGAATACTGGGTTTGCATGGTTATCAAATGATATGGGGTGACAGAGGGAGGAAAAGTCGCAGGTCAGATGCAGAGGTAGCCAAACCAAGAGATGGGGTCCTTTGGACGTTccagaggataagagaggagagaatgttgAGAGCATCACAGTTACTGCCTTGCACATTGCAGTGACCAATCTCCTTAGAACTCACTGATGGGCTCCCCTAAGTTCCAAGAGCTTGTCTCTCCAACGTCTCCTTCCCCTGGCCGGCACCAGACAGGAAGGAAACGGACCTTTAACTGGGAGCCCCGGGCCCCATGGAGGACTAGCACAGGACAGGATGCACcacggggcagagagagaggagagaccgaaAGAAGGACAAAGAGCGAGAAACAGAGATACAGAAAAGGAGAAAGATCAGTGTGGAGCAAAGAAGAGATCTTGGATCCTGACGCTTTTTGCCCCAGTGAGTTGGATCCCACTCCAATGTTCTACCTGTAGTTGATTGTAGACGGAACTGTATCTGGGATACTGTAGCATACTGTTGTCACTGGTTACAATGTTACGCCACCAATGACGGCTCGTCTCTGCAACATATTTGAGAGAAATGAACCAGAGTTTGCACTAAGTCCAACCTGCAATGCCAGGTTACACTACAGCAGAAAATGAAGCAGTACAGTGTAGCTATTGAGACTAaaggttgaaaaatgagtttctGTTTAGTCTAAAACATAATCAGTGGATGATGCTAATCTGTAGGGGGAAGAAATACTGTATGACGTCACTTGATGTTACTCAGGAACCTGGTATCAGATTTTAAGGACCTTCCGCTTCTGCTCTCTAGTGATCTATGTCAAACTAGCCTACATAATACTTCATAAACATGGCATAACTCTTGTTTTAACCATACATCTCCTTTTGGCAAACGACCCCTGTGGTGTCACATATAAGGACTTAGGCTTGCTAGTGTCGTCAGGATTTCTATGAATGGTTTTGGTATGGATTGTGTCATGGTTAAGATGGCCTTATATGGGCTTTAGCCTATAGAATTCATAAGTAACTATGTGTATTTATGTTGTATTTACTGTAAGCtttcactcactcagtcactgaGACACCAACCAGCTGATCATATTGTCAGAGTAGCGCTAGATGTCCAACCAGCTGATCATATTGTCAGAGTAGCACTAGATGTTCAACCAGCTGTATCATATTGTCAGAGTAGCAGTAGATGTTCAACCAGATGATCATATTGTCAGAGTAGCACTAGATGTTCAACCAGCTGTATCATATTGTCAGAGTAGCACTAGATGTCCAACCAGCTGGTCATATTGTCAGAGTAGCACTAGATGTCCAACCAGCTGATCATATTGTCAGAGTAGCACTAGATGTCCAACCAGATGATCATATTGTCAGAGTAGCACTAGATGTTCAACCAGATGATCATATTGTCAGAGTAGCACTAGATGTCCAACCAGCTGATCATATTGTCATTGTAGCACTAGATGTCCAACCAGCTGATCATATTGTCATTGTAGCACTAGATGTCCAACCAGATGATCATATTGTCAGAGTAGCACTAGATGTTCAACCAGATGATCATATTGTCATTGTAGCACTAGATGTCCAACCAGATGATCATATTGTCAGAGTAGCACTAGATGTCCAACCAGCTGATCATATTGTCAGAGTAGCACTAGATGTTCAACCAGATGATCATATTGTCAGAGTAGCACTAGATGTCCAACCAGCTGATCATATTGTCAGAGTAGCACTAGATGTCCAACCAGATCTCGAACAGGAAACAACTAGATCTGGCATCATCTTGCAGTTGTTGTTCTTGTCCACAGCCTGTAGATAAAAAGTTCAGCTCTGTTGATTTTCGTCTGTTAGTGATCCAACATACACTACATATGTTCCCTACCTATGGTGTGTTTGGTTTGGCCTGGATGGATGGAGCCCACTAGATATTAAACGTAATGCTAGGTAACCTCCCCACCCTCAAATAGCCAGCACTTGAGCAAAATGAGATATGATTAAATAGCAAATCACTCTGGCTTACATAGCTTCAAGACGGTGGTCACAAAACAGTTTGTGAAAATGTTCAATGGCAATACAATAAATGTAATGATTTAAAGTGCAAAACAAGTCTTACAAAGGCATACTATACAAAGCGTTGAGAAACAAGGAGAAAATACATAAAGCCACCCAACTCTAACAAACAACTTAGGGCCAGATGTACTAGCTAAGCATTTGCACTTTGCATTTAAACTGCGTagtgaaaatataaagtaaaGGTAAGAGATGGATTACAACCTTTTGGCCTTTTGTTTGGAAATAATCAATTTGATCTGAATTTCACTATGCACTAAATAGCTTatacatgttttgtttttgtttttcacacAATGACAGTTAATTTCATATAACCTACAGTGAAAAATGATTTCATTTTTCCCAGAAGTAACTTATGATTGGTCTGAATGGAAACTCTTGCATGAGTGCAGTCAATATACTCATTACATTGAACTCACACCTACTCTACGTGCAAATGTAAACCACTTTCATGTCTCAAAAGCTGTGAGGAAATACCAGCTACATGTTTTTCATGTTATGATTTATTTTGGTTATGCCACATATGTTTTGTTGATACATTCATTTAGTGGAGGTAAAAATTAGTGgagatacaaaaaaaaaacgaacaaCAACAGCTGTTGAACTGATTTCAATGTGAATTTTCTTGCCTCTTGTGTATATGTGTAATTATATGTGAATTGTACTGTAAATATGATATCTTTCACTGGATATTTCTTAATGCATGAACAAAACAGGGCAGTACGTAATAGCAGCTAGCTTCACTGCTAATGGCATGGACAGCTTCTATGGCATTGGCATACTTCTGCAAAgaaaacctaaaaaaaaaaaaatgttaagaaGAGAAGATTAAGGTTTTGTTTTGCATGACCTAAGTTTGGAAAGGTTTATTTTCGTATTTTTCTATTTCACACTTTTCATCAGCTTCATTCTCACAGCCAGGAAAGGAAGGACCCAGTGTTTACATGCTCTAGTTGCACTTGTTTTACAGCCAGCTCGACAAAACACTGTAAAACAAACTGTACATTCAATAAAACTGGAGAAAACTGAAAAATGGAATGTACATTTATATCTCATGGTCAACATGAATAATATGTACCTCTCAATCATATTCACTTACTGTGTACCGAAGCACATACAATTTGGAATCAATGCACCAAGTACATACTGTAGTTTTATCAGGTTTAGCTTTAGCACTAACATCAATCGCCCTTCAACTACAAAGGATGTAAAGGATGCTTAACAGAAGCATCTGAACTTAAGCCATGAGATTGCATGCTGAGTGGGTATTCCCagccgtttctcttaaatgagtTGCCtctggactgggggggggggggggggggttctggtcTGTTACTGATTATGATGGTACTTTCAGGAGGCTATGCTGAGTCCCAATTATACATCAGTATAGCTCCCTCTTTCAATAAGTTTTTACCAGGGAAAACACTACTTGTAAAACAAATAGCTATGGGGAAAATtctgtaaaaatgttttaaaaaataaattaaattgaaAGGCCACCAACCCATATCTATTTTAAAGATTTCAATcagtattttatatttattttttatttatttattttttcttcgtAATTGGCTGTATTTGTTGCGTTTTGTTATGGATTGTTATTATTACTGTTGTTTTCTCATAAAAAAAAAGGACATGTACTTACAACCTAACCTGGAagtaaaatgtatacattttttgcACTGTAATTGATGAGTTCACATTGGGCGCTTTATTTGATTCAGTTATCTAATGAGGTGTTTTATTTCATTTGGGGTATGAGTTGTACTCATGGAATCAACATTTGTATAGTATGCAGTTGTATTTACTTTCCTTGTCAGTGCCAATTAATGTTATAGTGTCAATCAGCTTTTTTTTAGGTGTTTgagcaaaatgtgttttttttacaaatacaAGGTGTTAAAGTATGTGGTATAAAAGGAGTATCATTCAAACAACAGACTTTTTACTAATAAAGGCTTATACAGTAAAGAATGACAATGTCTTTTTGTTTGCCCTTTGAGGACTAATATCTATTGTTTAATTCACATTTTTGCTGAGTTCATTTTAATGTGTTAGTCCCCAAAAGGTAAATAACATACTctgttgcaacaaaaaaaaaaatcaattgaaAAACGAAATAAGTTCTTTACCATTGCAATTCCAAGCTGTCGTGGGAGGTTTCACCTATTTGTTTGGTGTGTTGCTTTCTCATAAGGGCTTGTTGGGCTATCAGCCATGAGTacaaaagagagaaaagacaAGAGAGTGTCTTCTTGTTACAGATTTTAATTTGATTACAACCATGACGCATCAATGAGAGTATACCTCCTTCCGTGCCCTATTTCCTGAATAAAGACACAAAGTGACTCCTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014249 lncRNA downstream 502 43183084 ~ 43183313 (-) True G891526
TU1014245 lncRNA downstream 4911 43178681 ~ 43178904 (-) True G891522
TU1014244 lncRNA downstream 5635 43177949 ~ 43178180 (-) True G891521
TU1014233 lncRNA downstream 16057 43167425 ~ 43167758 (-) True G891511
TU1014227 lncRNA downstream 23647 43159965 ~ 43160168 (-) True G891505
TU1015625 lncRNA upstream 85133 43330795 ~ 43352906 (-) True G892746
TU1015827 lncRNA upstream 366710 43612372 ~ 43615811 (-) True G892936
TU1015847 lncRNA upstream 449402 43695064 ~ 43695404 (-) True G892955
TU1015848 lncRNA upstream 450157 43695819 ~ 43696019 (-) True G892956
TU1015850 lncRNA upstream 450454 43696116 ~ 43698631 (-) True G892957
XM_021618550.2 mRNA downstream 9800 43169725 ~ 43174015 (-) True LOC110533953
XM_021618544.2 mRNA downstream 43109 43118568 ~ 43140706 (-) False LOC110533951
XM_021618545.2 mRNA downstream 43111 43118568 ~ 43140704 (-) False LOC110533951
XM_021618546.2 mRNA downstream 43113 43118568 ~ 43140702 (-) False LOC110533951
XM_021618548.2 mRNA downstream 43116 43118577 ~ 43140699 (-) True LOC110533951
XM_021618553.2 mRNA upstream 288618 43534280 ~ 43542281 (-) True LOC110533956
XM_021618554.2 mRNA upstream 297499 43543161 ~ 43555601 (-) True LOC110533957
XM_021618556.2 mRNA upstream 370211 43615873 ~ 43653352 (-) True LOC110533959
XM_036990378.1 mRNA upstream 413765 43659427 ~ 43675574 (-) False LOC110533960
XM_021618558.2 mRNA upstream 413765 43659427 ~ 43676272 (-) False LOC110533960
TU1014179 other downstream 113657 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1105868 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1194014 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1199398 41982701 ~ 41984417 (-) True G890360
TU1010822 other downstream 2636448 40496714 ~ 40547367 (-) True LOC110533878
TU1015844 other upstream 437912 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 464823 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 953734 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 1060557 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 1522788 44768450 ~ 44769072 (-) True G893541

Expression Profile