RNA id: XM_021618557.2


Basic Information

Item Value
RNA id XM_021618557.2
length 4483
RNA type mRNA
GC content 0.50
exon number 30
gene id LOC110533960
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43659427 ~ 43676273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGACGCGTGTTGGTGGAGGCGGAGCTGAATATTTGAAAGTGGCGGGCAAGACGAGATCCATGACAACCACCGACTGAAGTTCTTTTGACGGGAAAAAAAAACGTTCAGTCAACTACATTTATTACGACAACTGATGCGTGGTTACATGTGGGTCTTATTCTAGcctctgaaaaaaaaaaatagttttaagaAACATTTAACTAACGTTCGTGGTGACTAGTTACCACGCTAGAGGCAAACTCATTTTAGCGAACGTTAGCTAGCTCATTGCAGGGGTCAAGACCAACGTCTTGCCAGCCCAAAAAAGCATGACAAAGGAGGATGATAAGTCCATCCCCGTGCGGGTTGCCCTGCGGTGTCGACCTTTGGTTACTAAAGAAATCAACGAGGGTTGCCAGACCTGTCTCACCTTCGTGCCAGGGGATCCACAGGTGATTGTTGGCATTGAAAAGGCGTTCACGTACGATTATGTTTTTGATCCtacaactgaacaagaggaagTCTTCAACAGTGCTGTTTCACCGTTGTTGTGTGGTCTTTTCAAAGGCTATCATGCTACTGTGCTTGCGTATGGTCAGACGGGTTCGGGGAAGACGTTTTCTATGGGAGGAACCTATACGTCGGCCCAAGAGAATGAGCCCACCGTCGGAGTCATCCCCAGGGTGGTCAGAATGATCTTCCAGGAAAGGGAGAAGCATACGGATTGTGAATTCTCTCTGGCAGTGTCTTACCTGGAGATATACAATGAAGACATCCTGGACTTGCTCTGTCCATCGGTATCCAAAGATAAACCATCAACCATCAACATTCGGGAGGACCCCAAGGAAGGCATAAAGATCGTGGGCCTGACTGAGAGGGAGGTGTTCTCTGCCAATGAGATGGTCGGCTGCTTGGAGCTGGGGAACTCAGCCCGTACTGTGGGCTCCACTGCCATGAATGCTGCCTCGTCTCGCTCCCATGCCATCTTCACCATCACCCTGGAGCAGCGCAGAGGGGCAGACAAATCTGACAATGTGGTGTCAAAGCTACACCTGGTGGATCTGGCTGGCTCTGAGAGACAAAAGAAAACCAAAGCGGAGGGCGACCGTCTGAAGGAAGGCATCAGCATCAACCGAGGCCTGCTCTCCCTGGGCAACGTGATCAGCGCCCTGGGTGATGAGAGCAAGAAAGGCACCTTTGTCCCCTACAGAGACTCCAAACTAACCCGCCTGCTGCAGGATTCTTTGGGAGGTAACAGCCACACCTTGATGATAGCGTGTGTCAGCCCTGCAGACTCCAACATTGAGGAGACCATCAACACGTTGCGTTACGCTGACAGAGCTCGCAAGATAAAAAACAAGCCTGTGGTCAACGTGGACCCTCGAGCTGCTGAAATGAAACGTCTGAAGCAGCAGGTCCAGGAGCTACAGGTGATGCTTCTGCATGCACGTGGTGGTGTGGCACCAGTGCTTTCTGGGACTGAGCCAGCAGAGAACGTGTCGAAGATCCTGGAGAGGACCCGTGCCCTGCAGGTTGAGAACAACAAACTGAGCCGTGCTCTGAGTGAGGCAGCAGGCCAGACTGCCCTGATGTTTGAGAGGATCATCATGACCGAGCAAGCAAATGAAAAACTGCAAAGCAAACTGCAAGAGTTGAAACAGCATGCAGCGTGTAAAGTGGACCTGCAGAGGGTAATGGAGACTCTGGAGGACCAGGAGCTGAAGGAGAATGTGGAAGTGATCCAGAATCTGCAGCACGTCATCCTGCAGCTCCAGGATGAGAGTGCTGGCCTTGCTGCCACCATTGAGGCGTTGGCTGCAGACTGTGGGGCTGAAGGAGATGACAGCCCTCATGTGTCTGGCAGCTGCAACGAAATCCCAACTGATGGTTCACCTTCTGCTTCTGTTGACAAAGACTCTACAGAGGGCTTCACTACCCAGCATGCCTTGCGCCAGGCCCAAATGTCCAAGGAGCTGATTGAGCTCAACAACATTCTGGCTCTAAAGGAGGAGTTTGTCCGGAAGATGTGCCAGAACGACAGCCACCTGGAGCCTATGCAGACTGAACACCAGAATAACATCAAGAGTCTGCAGACATCAGTGGGCTCTCtgcagaaggagaaggaggacctCATCCTGGTTCTCCACTCTGCCAAGAAGGACGTTAATCAGGCTAAGCTGAGCGAGCAGCGTAGGAAGCGTCTGCAGGAGCTGGAGGGTCAGATCACAGACATGAAGAAGAAACTCCAGGAGCAGTCCAAGCTCCTCAAGCTCAAAGAGTCCTCCGTCCGCAGCGTGGCCAAGCTCAACCATGAGATCCAGGCTATGAAGAGTCAGCGTGTACAGCTGATGAGGCAGATGAAGGAGGACTCTGAGAAGTTCAGAGTGTGGAAGAATAAGAAGGACAAGGAGGTGCTTCAGCTCaaggagaagGACCGTAAACGTCAGtttcagatggtgaagcttgaGAGTGACTTCCAGAAGCAGGCTAATGTCCTGCGCCGTAAAACTGAGGAGGCTGCAGCAGCCAATAAGCGCCTGAAGGATGCCCTGCAGAAGAGGAGTGAGGTGGCCGAGAAACGAAAGGACGTCCATTACAGAGGGCTGGAGGGAGCAGCCCTCAGAGTGAAGACCTGGCTCCTGAACGAAGTGGAGGTGCTGGTGAGCACAGGGGAGGCGCGGCGCCACCTGCAGGACCTGCTGGAGGACAGGAAGATCCTGGCAGAGGAGATCTCCCAGCTCAAACAGCAGATGGAGGCAGGGGAGCGGCCCGCTGCCAAAGTCAGGCGTCGGACCCTCATCATCTCCGAGCTGGAGAGCCAGGGAGAGCTGGAGGCATCTCTCAGTAAACAGGTGGACAACCTGGAGACAGAGATAAACCTCAGGAGTGCCCAGATAGCTGACCTACAACAGAAGGTCCTGGACGCAGACAATGAGGGGCGCTTGAAGCAACGCTGGGACAACATCACTACTATAGTGGAGGCCAAGTGTGCCCTCAAGGTCCTCATGTCAGAGTTGGTGTCTGCCAAAACAGCCAGTTCTAAGCTGGAGAGTGACCTGAAGCAGGAGAAGGGCAACATGCTGGACCTGCAGAAGACTATGTGTGATGAGAGGAAAGTGATGTCCACCATGGAAATGGAGAACCAGCACCACCTGGTGGAGCTGGAGCAGATGCACCAGGAGAAGGTCCTGTACTTCCTGGGTCAGCTGCAGAGCAAAGAGAGACCGTCTGTGGAGAAAAAGCAGGAGGAGGAGCCTTCCAAACGGGAGAGGGGGCTTCTGCAGCGCCTCAAGTTCCAGGAGGATGAGATTGAAAAGATGCAGAAATTGAATGAGCAAAACCAGAGGCTGTTGGATGACAATGAACAATACAAAAAGAAACTAACAATGCTCCAGTTGGCCAGTGGGAAAAAGATGAACGTCCTGCCAGCATCCACTCAGTCCCCAGACGACTCCTTTGAGTACATCCCGCCAAAGCCTAAAGGTCACCGTTTCACTACAACCAAGGCTCCCCTGAATATGGCCATCAACATTGAGGAGCTGGAGTCTGTCTCCGAgtcagaggaggaggatgagtggTGCCCTGAGAAGAACGAGAGAGGCTGTAACAGAAAGAACTCCAACGTCAACAAACCCAAGTCAACAGGGTGTGCCTGTAAGGGTCGCTGTGGCAACAAGCTGTGCCGGTGCCGTAAGGGAAAGATGACCTGTGCGGATAACTGCAAATGTGACCATGAGAAGTGTCGTAACATCGGCAACCAGAGGTCCAGTACACAGGACTCTAGCGAAGTCACAGATGATGGGTCCAAAGATTTGGTTTCTATTCTTCAAGACCCCACAGCCATTAGCTCTGGGGATACCACGTTCTTTAAACCACCCTGTGCCACTCCCACCAAGCTTGTGAGGAagactgtctctgtttctgctgaagaggaggaggaagatgatgatgatgatgatgaagagaggAACACAGCCAGCTTCTTGAAGAAGAAGAAACGAGGCCTTACTAGCTTCCAGAACAGCTTTTTCTCTGGATGTACGCCCATCAGGGAAGAGTCTTGAGGTGGGCAAAGGAAGCTAGTATAAACAAATCACGCAAGAACTTAGCCCCTGCTATAGGATAGTCCTTTCATCTGTTTTTGTCAGtgttttgttattattatttttttttcaatgtcTTAAATGTCCACTCCTACGTTCCTTGTAATAAAGTGTAGCAATTGATTCTAAATTAGACATCACTCTTTTATCTGTTTTGAATCTGAGGGCATTGGAAAATTCACTTACTCTGAACTGACTTAAATGTCTTTAATTATGAGGGCTGAAATGCACTAACAAGCTGATTTATTTCCATGTTGATCATACAAGGGAATTATTTTGTCActtgaaatgtaaatgtttaaTAGGTTGTATGTAACGGATTTTCTATCAATAGAAGTTGATCATTTTTTAATACTCATTTTTATTGTTATCCATAATAAATGAATAATTCATGATTA

Function

GO: NA

KEGG:

id description
K10395 KIF4; kinesin family member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015827 lncRNA downstream 43616 43612372 ~ 43615811 (-) True G892936
TU1015625 lncRNA downstream 306521 43330795 ~ 43352906 (-) True G892746
TU1014257 lncRNA downstream 458507 43199905 ~ 43200920 (-) True G891534
TU1014249 lncRNA downstream 476114 43183084 ~ 43183313 (-) True G891526
TU1014245 lncRNA downstream 480523 43178681 ~ 43178904 (-) True G891522
TU1015847 lncRNA upstream 18791 43695064 ~ 43695404 (-) True G892955
TU1015848 lncRNA upstream 19546 43695819 ~ 43696019 (-) True G892956
TU1015850 lncRNA upstream 19843 43696116 ~ 43698631 (-) True G892957
TU1015853 lncRNA upstream 25592 43701865 ~ 43702205 (-) True G892960
TU1015854 lncRNA upstream 26102 43702375 ~ 43702719 (-) True G892961
XM_021618556.2 mRNA downstream 6075 43615873 ~ 43653352 (-) True LOC110533959
XM_021618554.2 mRNA downstream 103826 43543161 ~ 43555601 (-) True LOC110533957
XM_021618553.2 mRNA downstream 117146 43534280 ~ 43542281 (-) True LOC110533956
XM_021618551.2 mRNA downstream 411421 43183815 ~ 43248006 (-) False LOC110533954
XM_036990374.1 mRNA downstream 413765 43183815 ~ 43245662 (-) False LOC110533954
XM_021618559.2 mRNA upstream 328 43676601 ~ 43678032 (-) True LOC110533961
XM_021618560.2 mRNA upstream 5176 43681449 ~ 43686604 (-) False LOC110533962
XR_002475067.2 mRNA upstream 14961 43691234 ~ 43694084 (-) True LOC110533963
XM_021618563.2 mRNA upstream 67525 43743798 ~ 43750767 (-) True tmem179bb
XM_021618568.2 mRNA upstream 162101 43838374 ~ 43846088 (-) False LOC110533972
TU1014242 other downstream 411792 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 589269 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1581480 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1669626 41987711 ~ 41989801 (-) False G890385
TU1012917 other downstream 1675010 41982701 ~ 41984417 (-) True G890360
TU1015844 other upstream 7301 43683574 ~ 43683920 (-) True LOC110533962
TU1015858 other upstream 34212 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 523123 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 629946 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 1092177 44768450 ~ 44769072 (-) True G893541

Expression Profile