RNA id: XR_002475067.2


Basic Information

Item Value
RNA id XR_002475067.2
length 1559
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110533963
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43691234 ~ 43694084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgcccttttcttgtggcaacaggtcacaaatcttgctgctctctctctctctctctctctcaggagtgCACAGATGGTTATGAGTGGGCTGTTCAGAGTCAGCACTGTAAAGAAGGCTGCCGGTGGGAGATGAAGTGTTTTAACCACTATAGTGGCTACCTGTGTCTCCCACGCTCTGCCTCTGTCATCACCGCCCCTGAACCCTCCAGCCGGTCAGTGGCCACCCTGCCTGTGGAGTCCTTCGAGGCCTTGAGAttgagtcatctgtggatctgttggggcggtatgcaaattggagtgggtccaggctgtctgagatgatggtgtgGATGAAACGAACAACATCAGTGTGATGATGGTCCAGGCCCATGCTGTGACCGGCCACGAAGAGTACAACCTGGAGCTGGTGTGTGTCAACCCCCACATGATCTATCAGACCAGCTCTGCCCTACGACTGTCTGTCTTTGTAAAACCATCTGAGGAGACAGATGGAGCAAAGAGAAGGAAACGGAActagagagtgggagacagatgTGAGATGAGAATAACTGTTAAGGGCATGAGATGGGAACATTTCTCAGACACATTACTACTATACATGCATCTTAAAGAAATCTGCCCGGGGCAAAGCAAGTTGTAAAACCATTCTTCCATAATTCTGTGAGtcaccacaaacacacatgctCATGCACACGCATGCAGACCAGTGGTGGCTGGTGACGCTTTAAATCGGAGGACGGGCTCatttgtaatggctggaatggaataaatggaacatatcaaacacgTTTTAATACTGAACGGTTTATTCCGTGCCAGACATTACTATATGTTGTCCTCGTTCgccagcctcctctgacacacgCACGCATGGTACACTGGCACACACTGGAATTTAGCCTCTGCAGTGTGCATCATATTTTCAATAGTTTCTTGCTGCACAAAAGACTAGCCAAGAGGGTCCATTATCTTGTTACCAAGGCAACTGATAAAAACATCCATTCAAAGCTACCTTTTCAACCCATGTCACACTATGTTATTTTTCTCTCCATCAGGGTCgttctcctgctctcctctcatCCTAACTGTTCTCCAGATAGTTCACTCTAAACTGTAAAGAATTAACATTGCTTGTTCCTATtctgtagtttaaaaaaaaaaaaattacaacttATGGTTGTTTTGTCATGTTACTAAAATTAAAAGAGATGAAACCAACATTTGGATGAATGATATTCCTTTTAGTTGCTGTTCCTCTTCCACCTCCCTGCTCATGTACACGCTTAACCTTTCTCTTACCTCTTCTGCTTAATTAAGGCCCAATAATGGGTTCTCTTGCTGACCatcttttctctctttcattcactCTGTCACGTTGGCTTATTTCCTTTTCAGTACAAACGCAGGTAAATGCACTCTTTCAAATCAATTGACACTGCTAATTACACTACAGTATGTGCAGTTAACATAGATTAGCATCTTACTTTAAATTGCCAAATGACCCTAACAACAGGTTTAAACGTCACCCTAGCTATTTATTTAAACATGTTTTAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015827 lncRNA downstream 75423 43612372 ~ 43615811 (-) True G892936
TU1015625 lncRNA downstream 338328 43330795 ~ 43352906 (-) True G892746
TU1014257 lncRNA downstream 490314 43199905 ~ 43200920 (-) True G891534
TU1014249 lncRNA downstream 507921 43183084 ~ 43183313 (-) True G891526
TU1014245 lncRNA downstream 512330 43178681 ~ 43178904 (-) True G891522
TU1015847 lncRNA upstream 980 43695064 ~ 43695404 (-) True G892955
TU1015848 lncRNA upstream 1735 43695819 ~ 43696019 (-) True G892956
TU1015850 lncRNA upstream 2032 43696116 ~ 43698631 (-) True G892957
TU1015853 lncRNA upstream 7781 43701865 ~ 43702205 (-) True G892960
TU1015854 lncRNA upstream 8291 43702375 ~ 43702719 (-) True G892961
XM_021618560.2 mRNA downstream 4630 43681449 ~ 43686604 (-) False LOC110533962
XM_021618559.2 mRNA downstream 13202 43676601 ~ 43678032 (-) True LOC110533961
XM_021618557.2 mRNA downstream 14961 43659427 ~ 43676273 (-) True LOC110533960
XM_021618558.2 mRNA downstream 14962 43659427 ~ 43676272 (-) False LOC110533960
XM_036990378.1 mRNA downstream 15660 43659427 ~ 43675574 (-) False LOC110533960
XM_021618563.2 mRNA upstream 49714 43743798 ~ 43750767 (-) True tmem179bb
XM_021618568.2 mRNA upstream 144290 43838374 ~ 43846088 (-) False LOC110533972
XM_021618569.2 mRNA upstream 200001 43894085 ~ 43898188 (-) True LOC110533973
XM_036990387.1 mRNA upstream 215818 43909902 ~ 43940813 (-) False LOC110533974
XM_036990384.1 mRNA upstream 215818 43909902 ~ 43966849 (-) False LOC110533974
TU1015844 other downstream 7314 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 443599 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 621076 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1613287 42076741 ~ 42077947 (-) True G890403
TU1012952 other downstream 1701433 41987711 ~ 41989801 (-) False G890385
TU1015858 other upstream 16401 43710485 ~ 43710969 (-) True G892965
TU1016035 other upstream 505312 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 612135 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 1074366 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 1317245 45011329 ~ 45016047 (-) True LOC110534025

Expression Profile