RNA id: XM_036990381.1


Basic Information

Item Value
RNA id XM_036990381.1
length 5671
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110533971
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43783819 ~ 43879779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGCCGACTACTTAAGACACGGCCTCggatctaggttgtgcctttagatttagAGAAAATGAACAAATATGGAAGAACATTTCACTCttattgacttctcaaacccagGACTGGTCTGTTTCGCAAGCGTTCCCGGATGTCTCGCGATGTTGCGTCtatgggtttagaaactctgggGTTTATCTTCCGAATCAATAGCTATTTCTAGTTGttttatcaaagttagctggctaactcattgatagTATACACCAAAATACATGGATATATAGATCAGGCCCACTGGATTCTCTATGGCCCCGGGTACGAGCGTATTAATAGGCGTAATCAAGATAACCAATAGCAAGGGGTGGGTGGGCGAGTAGTCTGAGTGAATCAGACGTCTCAGGTAAATAGACAGCTAGCTTGTCTTTCAAACCCCAGACTTTTTTCTGTCATCAACCGTGACTGCAAGCTAGGGTGCACAGAAAACAAACACGATCGGAGGGGGACTGTCATCTCACAGTACCCAGCTAGCTAATTACGTTGATTGAAGAAGAAAGTTATCTGCCAGCAACAGTCAATAGCGACACCCGACACTCCTGCTAACGTCAGATAGACACAGATAGTTAGCTGGGAGACTTTCAAGCCTATTCAAGCGTGCTAACGTTAGGTTTGAAGCGGTAAGATGCTGCTGCAGGTTGGAGGCATGCGTTCGGCCCTGGGGCTGCTGGCTGTCAGGAGGGCATGCTGCCTGTCCCGCTCCAACCACACCTCCCCTCGTACTCTGGAGTACAAGCCCATCAAAAAGGTTATGGTGGCCAACAGAGGTGAGATTGCTATCCGTGTGTTTCGGGCCTGCACTGAGCTGGGGATCCGGACGGTGGCTGTCTACTCTGAACAGGACACAGGCCAGATGCACAGGCAGAAGGCAGATGAGGCTTACCTCATAGGGAAGGGCCTGCCGCCCGTGGCTGCCTACCTGGACATCCCTGACATCATCAAAGTGGCCAAGGAGAATGATGTGGATGCCATCCACCCTGGGTACGGCTTCCTGTCTGAGCGATCAGACTTTGCCCAGGCGTGTGCCGATGCTGGGGTACGCTTCATTGGCCCTTCCCCTGAAGTGGTGCGCAAGATGGGAGACAAAGTGGAGGCTCGAGCCATCGCTATCCGTGCAGGGGTCCCAGTGGTACCAGGGACAGACGGCCCCGTCACTTGCCTGTCAGAAGCCCAGGAGTTTTCCAACACCTATGGCTTTCCCATCATCTTCAAGGCTGCCTACGGCGGTGGGGGCAGGGGGATGAGGGTGGTCAAAGAGTACGAGGAGCTGGAGGAGAACTATCAGCGTGCGTACTCTGAGGCCCTGGCTGCGTTTGGGAACGGTGCTCTGTTCGTGGAGAAGTTTGTTGAGAGACCCAGACACATTGAAGTGCAGATCCTGGGTGACAAGTATGGTAATATTATCCACCTGTATGAGAGGGACTGCTCCATCCAGAGGAGGCACCAGAAGGTGGTAGAGATGGCCCCGGCTGTACAACTGGACCCACACCTCCGGGACAGACTCACAGCTGACTCTGTCAACCTGGCCAGACAGGTGGGCTATGAGAACGCTGGCACGGTGGAGTTCCTGGTGGATAAACATGGAAGGCACTACTTCATCGAGGTCAACTCCCGCCTGCAGGTGGAGCACACCGTTACCGAGCAGATCACAGATGTGGACCTGGTTCATGCTCAGCTGCACGTGTGTGAGGGGCGTAGCCTGCCAGAGCTGGGCCTGAAGCAGGATAAGATCCGGATCAATGGCTTCGCCATCCAATGCCGGGTGACCACAGAGGACCCTGCCCGTGGCTTCCAGCCTGACACTGGACGACTTGAGGTGTTCCGGACTGGAGAGGGCATGGGCATCCGTCTGGACAGTGCCTCTGCGTTCCAGGGGGCCGTCATCTCCCCCCACTACGACTCCCTCCTGGTCAAAGTCATCGCCAGCGGGAATGACCTGCCTGCCGCCGCTGCCAAGATGAACCGGGCGCTGGCAGAGTTCCGTGTCCGCGGGGTCAAGACCAACATCCCCTTCCTCCAGAACGTTCTGAGTAACGATCAGTTCCTGTACGGCACCGTTGACACCCAGTTCATAGATGAGAACCAGGAGCTCTTCAACCTCAAGCCGGTCCAGAACCGAGCCCAGAAGCTGCTGCACTACCTGGGTCATGTGATGGTAAATGGCCCCACCACTCCCATCCCAGTGAAGGCCAAGCCCTCCTCTATCGATCCTGTGATCCCACCCATTCCTCTGGGTGAGCCTCCAGTTGGGTTCCGTGAAGTCCTCTTAAGGGAGGGTCCAGAGGGCTTTGCCAAGGCGGTGCGTGCCCACAAGGGTCTGCTGCTCATGGACACCACCTTCAGAGATGCCCACCAGTCTCTCCTAGCCACACGTGTCCGCACCCACGACCTCAAACAGGTCGCCCCCTTCGTGGCCCATAACTTCAGCAATCTCTTTAGCGTGGAGAACTGGGGAGGTGCCACTTTTGATGTGGCAATGCGTTTCCTGTGCGAGTGTCCATGGAAACGACTGCAGGAGCTGAGAGCTCTGCTGCCCAATGTGCCTTTCCAGATGCTGCTGAGAGGAGCCAACGCTGTGGGCTACACCAACTACCCCGACAACGCAGTGTTCAAGTTCTGTGAGGTGGCCAAGGAGAATGGCATGGACATCTTCCGTGTTTTCGACTCTTTGAACTACCTGCCCAACCTGATGCTGGGTATGGAGGCTGCTGGGGCTGCCGGGGGGGTGGTGGAGGCCTCCATCTCCTACACAGGAGATGTGTCTGACCCCATGAGGCAGAAGTACTCTCTGGACTACTACCTGAAGTTGGCTGATGAGCTGGTCAGAGCTGGAACACACATACTGAATGTCAAGGACATGGCAGGGCTGCTGAAGCCTGAGTCTAGCCGAATGCTGATTGGTGCTCTGAGGGACCGTTTCCCTGACATGCCCATTCACGTCCACACCCATGACACGGCAGGCGCCGGCGTGGCCGCCATGCTGGCGTGTgccgaggctggggccgacatcGTAGACGTCGCTGTGGACTCCATGGCTGGGATGACATCGCAGCCCAGCATGGGAGCCATTGTCGCCTGCACCAAGGGAACCAAATTCAACACAGGCATATCTCTGGAGAATGTCTATGACTACAGTGAGTACTGGGAGGTTGCTCGTGGGCTCTACGCACCATTTGACTGTACAGCCACTATGAAGTCTGGCAATGCTGACGTGTATGAGAACGAGATCCCTGGAGGCCAGTACACCAACCTGCACTTCCAGGCTCACAGCATGGGCCTGGGACACAAGTTCAAGGAGGTGAAGAAGTCCTACACAGAGGCCAACAAGCTGCTGGGTGACCTCATCAAGgTGACCCCCTCCTCGAAGATCGTGGGCGACCTGGCCCAGTTCATGGTGCAGAACTCTCTGACGAGggcagaggtggaggagagggctgatgagctctccttccccctctctgtggTGGAGTTCCTGCAGGGCCACATTGGCATCCCACACGGAGGCTTCCCTGAACCCTTCAGGTCCAAGGTGCTGAAGAATATGCCACGGGTGGAGGGCCGCCCTGGTGCCTCTCTGCCCTCCATGGACTTCCAGGCCCTAGAGAAACAGCTGCGAGAGACACACGGAGATGACATTACTCCCGAGGATGTGATGTCAGCAGCCATGTACCCCAAGGTGTTCCAGGAGTTCAAGGAGTTCACCCATCAGTTTGGCCCCGTGGACTGCCTCAACACACGCCTGTTCCTCGATGGACCCAAGATTGCTGAGGAGTTCGAGGTGGAGTTGGAGCGAGGGAAGACCCTCCACATCAAAGCCCTGGCCCTGGGAGACCTCAACAAGGCTGGCCAGAGGGAGGTGTTCTTTGAGCTGAATGGAGCGCTCAGATCTGTCCTGGTCAAGGATACAGTGGCCATGAAGgaGATGCACTTCCACCCCAAGGCGCTGAAGGACGTGCGTGGCCAGGTGGGGGCGCCCATGCCTGGGAAGGTGGTGGAGGTGAAGGTGAAGCAGGGCCAGATGGTGGAGAAGGGCCAGCCTCTGTGTGTGCTCAGCGCCATGAAGATGGAGACAGTGGTCAACTCTCCACTCTCCGGCACCGTGGTCAAGATTTACGTCAATGCCGACAGCAGCCTGGAGGGAGACGACCTCATCCTGGAGATCACCGAGTAGGACAGGAAAGACCACCAGCAGGAGCCATTAACCATAGCACAACCTTAGCACAACCTTAGCGCTTCAAGTCACACATGCTAAAGTACAAGTCCAACTGTAGAAAAGacagatatattttttaaattctgtaaaatatatatatagtatgattGTAATCAATTAACATTTAGTTTGTTTTCTTGTTGGAGAGCTTCCTATGATGTTTGCACTTGTGTGATATATGTGGTAATCCACTCACTTTAGAAACCGAAAAGTACAATCATTACCCATTAATCTTGACTAATCTGTAAGATTTCGTATTAACGTCAATGAACGTCATTCTCGAACGCGTTCAGGAAGAGTGAAATTGCTGAGGCTATGCGTATGAAAAAATGATTTCATTAATAAGTAGAAAGCAATTGATAAGCAGTTGACAATTCAGGTAATTAATGCAATGTAAAATCTTGACTTACCATGTTTTAAATTCCACAGAACATTTTGGGCCATCCCTGTACGAGCATCACCCAGCCTGATTTTGATCATTTGATATGTTTAAATATAAAAATGAAAgttaatgtaaatgtgataataTAGATGTTCAACCATAACAAGTGTTCTTTCCAGCCTCCATCTCACTACGTTGACTGAGTAAAGATGTTTTAAGCATCTACTTTCAATACATGTGTTCACTCATTGCGTTACTATCACACATTTTTCCCAACCCGTTTTAAAATTAAACAAGCTTTTACTGTAAAATTCCTTATTGAAGCATAAGTGACTCAGTTGACCAAAACTGTTCTTTTTCGATATGGAACCTAAAATACCATTATTTTGACCAATTGCTTTGCTATGTACATGAATGCAAATATTCTTGATATTGATATTTTGTCAACTCGCTGTGAATTCTAAACATAGAAATTAATCATACTCAATTGGACATATTTAGTTCTGGTACTCATTGGGACAGACTGGACTCTGGTTAGATTTACAGGTTGTAGGGGGTAGTTTTCATGTGCTCTATCTGTGATAGTAGATTACTAAggggtttgttgttgtttttttcgccCATCTGTccgccctctccctcccccaattGTAAACCTGAAAACTATGACAAAATAATTGGggccaattttttatttttttttatttttttgtgtggagAGTAAATGGTAGGCTATATTTTAATGTTACTGCTGTGTATGGCATGACCTTACAGTACATGCTGGGCAATTCCTGAGTGCTCTTGACGGATGTTAAATGTTTACAGATTCTCATTCTGTCACAACTGTCATGGTAATCACTTAGTGTGACCGTTCACATCTGTGGTGAGTGTGTTGATGACCATGAACATTGGTTATGTAATGCAGTATTTGCAGTGCAAAGGGAATTGTGAAATGTTATTGATTTAAGATCTTTTTTTTGACGCGTAAAAGATCTGCTAAGGCatgagtaaaataaaaaaaagtactaATTT

Function

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function
GO:0004736 pyruvate carboxylase activity molecular_function

KEGG:

id description
K01958 PC, pyc; pyruvate carboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014634 lncRNA upstream 1655 43781958 ~ 43782165 (+) True G891884
TU1014615 lncRNA upstream 27280 43754897 ~ 43756540 (+) True G891866
TU1014596 lncRNA upstream 41334 43741930 ~ 43742486 (+) True G891854
TU1014595 lncRNA upstream 51789 43731639 ~ 43732031 (+) True G891853
TU1014567 lncRNA upstream 60005 43722852 ~ 43723815 (+) True G891825
TU1014763 lncRNA downstream 127042 44006821 ~ 44007729 (+) True G891988
TU1014812 lncRNA downstream 205914 44085693 ~ 44086002 (+) True G892033
TU1014813 lncRNA downstream 206306 44086085 ~ 44086339 (+) True G892034
TU1014837 lncRNA downstream 257820 44137599 ~ 44137831 (+) True G892054
TU1014830 lncRNA downstream 270986 44150765 ~ 44155040 (+) True G892048
XM_021618566.2 mRNA upstream 4037 43772881 ~ 43779783 (+) False LOC110533970
XM_036990380.1 mRNA upstream 4037 43772882 ~ 43779783 (+) True LOC110533970
XM_021618564.2 mRNA upstream 13875 43765085 ~ 43769945 (+) False LOC110533969
XM_021618565.2 mRNA upstream 13875 43765085 ~ 43769945 (+) True LOC110533969
XM_021618562.2 mRNA upstream 43961 43732222 ~ 43739859 (+) False LOC110533965
NM_001165227.1 mRNA downstream 9569 43889348 ~ 43893837 (+) True fkbp2
XM_021618571.2 mRNA downstream 83301 43963080 ~ 43979112 (+) False LOC110533975
XM_021618574.2 mRNA downstream 92517 43972296 ~ 43979112 (+) False LOC110533975
XM_021618572.2 mRNA downstream 92518 43972297 ~ 43979112 (+) False LOC110533975
XM_021618573.2 mRNA downstream 92518 43972297 ~ 43979112 (+) True LOC110533975
TU1014602 other upstream 40330 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 42790 43738585 ~ 43741030 (+) True LOC110533965
TU1014606 other upstream 46293 43733557 ~ 43737527 (+) False LOC110533965
TU1014589 other upstream 70738 43712545 ~ 43713082 (+) True G891847
TU1014468 other upstream 228303 43542466 ~ 43555517 (+) True G891740
TU1014709 other downstream 58633 43938412 ~ 43940557 (+) True G891951
TU1014802 other downstream 197938 44077717 ~ 44080196 (+) False LOC110533983
TU1014803 other downstream 197938 44077717 ~ 44081410 (+) True LOC110533983
TU1014996 other downstream 775779 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 1129055 45008834 ~ 45010849 (+) True G892499

Expression Profile