RNA id: XM_021618568.2


Basic Information

Item Value
RNA id XM_021618568.2
length 3854
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC110533972
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43838374 ~ 43846088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCACACACATTGCAGTCTCGCTCTCGATCACACACACAGGCTCGCTGCAGCGAAATCCACAAATCACAGACTAGTGCAGCACAGGACGGCAGGGGAAAAGAACGTCAAAACAAGCCATTGATTGAGTTGTGGAAAAGCGCGTCGACCACAGAGGTGAACCATGCAATCGTTATAGGTCGTTGACATCTATGGTTGAGAGCCTTCTACTTCTACAGCGCCGCTCCTTTCCCTGGGCATGTCTGAAGGACTAACACAAAACAGGCAGCCTGACGGAAGGAACCAGGGAGTGAGAAGGCATCATTAACCTTCCCACACAGTGGGGAAACTGAACTGCCCATttaggaggagaaagggggttagagaggagggggggtttGGACGTTTGAGAGGGCGAAAGGCTGTTCAACACGGAGATAACACAGGCTTGGGGATGTTCTAGAGCCTCGCTGCTTCTGCAAAGGACAGCGAGAGgaagaggggtctgaataccaaTAACTACAGAGTAAACTGAAGAGACTGGATACCGTCCTGGGAGAAGACTGAAGACTGCAATTAGCGAATAGAtaagagacagaggaggataAATGCTGTGAAGCAGAATGAAATGTTTCACACATTTCAAATCTGTTGTTGATCTAGAAAACATAAGCTTGTTGTCTCTGAAAACCTCCGGGCTCATGCTTGAAAAACTCAATCGGATTATTTCGATTCACGCTCCAGTTATCAGAACGAATCAATGGATGTGGCATCCTGAACAGCATAAGCAGCAAAACTTCTGTGAATAACCAGCACAACAATGCCTAAATCCAACTCACAAATACTACACCCATACCTGGCGCCACACCACTCAAAATACTATTGGAAGCCTTCAAAGCAAAGCTCCTCTCTAAAAGGGGTCCACCCAGACAGAACAGTACCCCCTCCTAAACTCAAGCCAAAGGTGACCAAACCTTCCCTGAGACCCCCTGCCTGTCCTCTGACCCCACAGACAGTAGTCTGGCTGGCCGTGGTGACTGGTTCCTGTGTCTTCCCTGCGCTACTTGGCCCAGGCGTGTCTGCTGGAGAGACCTGGGGCATGGTCTCCATCTGTCCCTTCCACTGTGTGTGTCGAAATCTCTCAGAGTCTCTGAGCACGCTTTGCGTCAACAAGGGCCTGCTGTTCGTCCCTCCTGACATTGACCGGCGCACCGTGGAGCTCCGTCTGGCAGATAACTTCATCCTGGAGGTGGGCAGGGTGGACTTTGCCAACATGTCAGGCCTGGTAGAACTGACTCTGTCCAGGAACACCATCCACACCCTGCGGCCCCTGTCCTTTGCTGACCTGGAGAGCCTGCGCTCACTCCACCTGGACACCAACCGGCTGACCATAGTGGGGCCAAGAGACCTGTCCGGCCTGACCAACCTACAGCAcctcatcatcaacaacaaccagctgACCGACGTCTCCGCCGAGGCCTTCGATGACTTCCTGCAGACGCTGGAGGATCTGGACTTGTCCTACAACAACCTGAGGAAGGTCCCCTGGGAGGCCATCCAGAACATGGCCAGCCTGCACACCCTCAACCTGGACCACAACCTCATAGACCAGATTGCTGAGGGCTCCTTCGGCGAACTCTACAAGCTGGCCCGCCTGGATATGACATCCAACCGGCTGCAGACGCTGCCCCCCGACCCCTTGTTCTCCCGCTCCCAGACGGGCGTGGTCAGCCCCACGCCCTACAGCGCTGTCATCAGCCTGAGCTTCGGGGGGAACCCCCTGCACTGTAACTGTGAGCTGCTGTGGCTGAGGCGGCTGATCCGCGGCGACGACATGGAGACGTGTGCCACCCCCGTCCACCTGGCTGGGCGCTACTTTTGGTCCATCCCAGAGGAGGAGTTCACCTGTGAGCCTCCGCTCATCACACGCCACTCCAACAAGCTGTGGGTGCTGGAGGGCCAGAGGGCCACGCTGAGGTGCCGTGCCATTGGTGACCCTGAGCCCATCATTCACTGGATCTCCCCTGACGACCGCATCGTGGCCAACTCCAGTCGTGTGTACTCCTACTACAATGGCACCCTGGACGTGCTTGTGACGCGGGCGCGTGACGACGGTGCTTACACCTGCATCGCCATCAACGCTGCCGGGGAGGCTACAGCCCTGATAGACCTCAAGATCATCCCCCTCCCTCACCGCGGCAACAACACTGTGCCCCTCACCAACCCTCGTGGAGACCCAGGCTCCTCAGACATTTCCAGTGGGAGAACAGGAGGGTCTGGAAGGAACGggaagggtggtggtggtggtggttcgGTAAAGAACGccacaggagagggggagagcggagagaggggggatggagaagcCAGTACCAGTGAGCGTTTGGTGGGGGTCCTGGGGGTGACCGCCACCTCTGCCCAGGTGCGCTGGGTCCTGGGCCGGGCCACTGGGCCGTACCTGGTGTGGATGTACCAGATCCAGTACAACTGCACTGCAGATGATGCCCTGGTGTACAGAATTCTGCCGCCTACAAGCAGCTCTTTCCTGCTGAAGAACCTGGTGTCTGGAGCAGACTACAGCCTGTGTGTCCTGGCCATCTTTGACGATGGGGTGTCCACCCTGGCCACCACCAAGGTCCTAGGCTGCACCCAGTTCAGCACCAAGGAGGACTTCCCAGAGTGCCGATCCCTGCAGGCCCACTTCCTGGGCGGCACGCTGACGGTCATGGTGGGGGGGGTCATCGTGGTAACACTGCTGGTGTTTACCGTGGCGATGATGGTAAGGCACCGTGTCTGTGGAGACTGTCGAGACGAGGGCCACTACCCTGCCCATCACCATGACGACTTCCTTCCCTCCAAGGAAGGAGTGGATGTTTACGCTCAGACCAACGGAAATGGGAGCGTGATGATGGTGGCTCTGCCCAACAACATTCTTGGCCAACAGGCTAAGCCGCTGCCGTTGAAAACCAAACCCCAAGCCAAGAACAAGCCTGGGAAACTGCCCAAGCCAAAGCTTGACTCAGATCAGCTCAGTGGGGAGGGAAAGGGTGAGAAGCCAGGCCTGGAGGTGGTCGTGAGGGGGAAAGGATTCCCCCCTTTCACccttgagagtgagagagtgacacTGTACTACTCCCCTGCCAACACCTCCCAGACCTTACCCCATCCCCGAGCTCACAAGGCCCCGAAACACTCAGGCAAGCTCAAGCTGCGCCGctctgaggagaaggagagagacttgGACAAAATGGTGGGCTCCATATGCAGCCTAGACTCTGAGGCCCAGGGGGAGGAGTTGGAGCGCGTGAAGGACTCGAGGAGGGGAGATCGCCCGTCACTAGGGCCGACACGCAGCTGCTCCTTTGACGTGGGCGAGATCACCACGACAACCTGCTACGGATATGCAAAGCGACTGAGTGTGATATGGACCAGGAGGAGCCAGTCGGTGCAGGGCATGCTGGTCCAGTGTGCCTCAACAGCCAGTTCAGCGAGCAGCACAGGGAGCGACCACCCCCCGCCTGCCCTCACACATGGCTACCTGCACACCAACAACACCTCTAAGTCCAGTGAGGCTGACAACATCGGAGACCTGGAAGAGAGTGTTTTATAGGGTGAAGAGGACAGAGGTACAAACAGGAACAAAACAAAAAGACCAAAGGGATAAATTGACAGTGGACAGGTGGATGTAAAAGCCATTTGGCTTAAAAAGGACGAGAAACTATCAAAGCACACAGTGCATTGCACAGGGAACATAGCACATGGTGAAGGAGGTAATGCCACGTATGGTGTGGACAGATGGGAGTGACAACtattgtgagaaaaaaaaaaaaaaaaaaaaggtataatGTTGTCTGCTTGTCTAAAGCTGTGAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015886 lncRNA downstream 56291 43781694 ~ 43782083 (-) True G892991
TU1015810 lncRNA downstream 58600 43772836 ~ 43779774 (-) True G892919
TU1015875 lncRNA downstream 83824 43754313 ~ 43754550 (-) True G892982
TU1015867 lncRNA downstream 105709 43732377 ~ 43732665 (-) True G892974
TU1015807 lncRNA downstream 115967 43714181 ~ 43722407 (-) True G892917
TU1015978 lncRNA upstream 38515 43884603 ~ 43977126 (-) True G893071
TU1015909 lncRNA upstream 46957 43893045 ~ 43893826 (-) True G893009
TU1016090 lncRNA upstream 218359 44064447 ~ 44064746 (-) True G893171
TU1016094 lncRNA upstream 236142 44082230 ~ 44082442 (-) True G893175
TU1016121 lncRNA upstream 292223 44138311 ~ 44138523 (-) True G893201
XM_021618563.2 mRNA downstream 87607 43743798 ~ 43750767 (-) True tmem179bb
XR_002475067.2 mRNA downstream 144290 43691234 ~ 43694084 (-) True LOC110533963
XM_021618560.2 mRNA downstream 151770 43681449 ~ 43686604 (-) False LOC110533962
XM_021618559.2 mRNA downstream 160342 43676601 ~ 43678032 (-) True LOC110533961
XM_021618557.2 mRNA downstream 162101 43659427 ~ 43676273 (-) True LOC110533960
XM_021618569.2 mRNA upstream 47997 43894085 ~ 43898188 (-) True LOC110533973
XM_036990387.1 mRNA upstream 63814 43909902 ~ 43940813 (-) False LOC110533974
XM_036990384.1 mRNA upstream 63814 43909902 ~ 43966849 (-) False LOC110533974
XM_036990385.1 mRNA upstream 63814 43909902 ~ 43966849 (-) False LOC110533974
XM_036990386.1 mRNA upstream 63814 43909902 ~ 43966849 (-) True LOC110533974
TU1015858 other downstream 127405 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 154454 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 590739 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 768216 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1760427 42076741 ~ 42077947 (-) True G890403
TU1016035 other upstream 353308 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 460131 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 922362 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 1165241 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1901227 45747315 ~ 45750331 (-) False LOC110534046

Expression Profile