RNA id: XM_036990385.1


Basic Information

Item Value
RNA id XM_036990385.1
length 5587
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110533974
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43909902 ~ 43966849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGCTGATGTGAGCGTTGGGTTTAAGTCCGTTTCCATCACTCATTCGCGCCTACACCCATGTGCATCTCTCTATCGTAGGCTATTCTTCGAATGGACTCTGAGAAACAGCATTTTCCAATTCATTTTTGGTTAATTGTGAAACATTATGCTAAACCTGTTAATTATTTGTTTAATTTAGTGCAGACAAACAGTAGTTTGGTATTCTGGTTGCTGTGGAGAATAAATGGCCGATCCAAAAAGGAGCGAGGTTCTTTAAACGATCCAGCACGGTGTCAATCATTTAACTCAATAATTCAGCATCAACAACCGCTCATTGCCTGGCTAACAGAGACGAGTGCCAAATTagattttaaataaaataaaacataaacaaaaGATTCTGAATACCAGACATTATTTATTAAGAATAAAATGACCGAGAATAGCATATCAATTCAATCCATGTTCGCAAGGAAACCTGCCTGAGAAGCCTAGAAGAAGCGCCTAGGCAAGCTGAACGACGTCTCCAAGATCCAGCGCATCAACGCGAGGAGCACCATTGATAGGCTAGTGTTCTTTGGAGGCAACATACAGTGAGTTTTGCTGTGCCACATTGTATACGGAGAAGGAGTCGAAGGACAGGAGGCAGCTGATATTGGGCAGCAGCAATACCACATAGGAAGAAAGCCTGCTTGTCCCCTGCCATTCGGAAGAGAGGTGTCTGTTGAGACGTTAGACGTGAAGTGGATTGATCTCTGGAGCCAGCTGACTCGAATGTCCAGACGCCGGCATGTTACACACCCACATTCTGAGCCTTGCCcaactctcctctacctcctccagcctctccacctccctcttcctcctcttcctcctggggCTTACCCACCTCTCCCAGGCTGGCTCAGACCATGCAGCACTCAGCAGCCCGCCCAGCAACTGCTCTGATGGAGATCCCTGCTCTGAGGGCGTGGTCCTGCCCATGTGGAACCCTCAGAACCCGTCAGTGGGCGACAAGGTGGCACGGGCCATCGTCTACTTCGTGGCCCTCATCTACATGTTCCTGGGCATGTCCATCATTGCTGACCGCTTCATGTCTTCTATTGAGGTCATCACCTCTCAGGAGAAAGAGATCACCATCAAGAAGCCCAACGGAGAGACCACCACAGCCACTGTACGCATCTGGAATGAGACCGTATCCAACCTGACCTTGATGGCCCTAGGCTCGTCTGCCCCAGAGATCCTGCTGTCTGTCATCGAGGTGTGTGGCCACTCGTTTGAGGCAGGCTCCCTGGGCCCCAGCACCATCGTGGGCAGCGCAGCATTCAACATGTTTGTCATCATTGCCCTCTGTGTGCACGTGGTGCCAGAGAACGAGACACGCAGGATCAAGCACCTGAGGGTGTTCTTCGTCACGGCAACCTGGAGCATCTTCGCCTACATCTGGCTCTACCTGATCCTGGCTGTCATCTCCCCGGGGGAGGTGGAGGTGTGGGAGGCCGTACTTACCTTCATGTTCTTCCCCATCTGTGTGGTGCAGGCCTGGGTCGCGGACCGACGCCTGCTCTTCTACAAGTACATCCACAAGCGTTACCGTGTCGACAAGGCCCGCGGCATCATCATCGAGACAGAGGGGGACAGCATGTTCACCAAGATGGATGTGGAGATGGACGGCCAGGGGGGCAACTCCCACCCCCACCCCAAGGATGTGCTGGACCACatgctggagggggtggaggagggtggagggctGAACTCAGAAGAGGATGAGGCTCGGAGGGACATGGCCCGCACCCTGAAGGAGCTGAAACAGAGGCAcccagagaaagacacagagcaGCTGATTGAGATGGCCAACTACCAGGTTCTGGTCCAGCAGCAGAAGAGCAGGGCCTTCTACCGCATCCAGGCCACACGCATGATGATCGGTGCTGGGAACATCCTGAAGAAGCATGCTGCCGACCAGGCCAGGAAGGTGGTGAGCTGCCATGAGGCCAGCGGACAGGAGGAGGACCCCCACACCATCTACCTGCAGTTTGAACCCTCCCACTACCAGTGCTTCGAGAACTGTAGCTCGCTCAAGCTGTCTGTTGGGCGCCATGGGGGCGAAAGCGGCTGCACAGTCAAGGTGGACTACCGGACAGAGGACGGAACGGCCAATGCCGGCTCAGACTATGAATTTGCTGAGGGCACGCTGGTCTTCAAACCTGGTGAGACACTGAAGGAGCTGACCGTGGGGGTTATTGATGACGACATCTTTGAAGAGGACGAGCACTTCTACGTGCACCTCAGCAACCCTCGCATTGTCCACCGTGCCGAGGTGGCCATCCTGGAGCCcagcaccatcaccaccaccagcagtaTGAGGAACCTCTCCCCCCACGTATCCCCCAAGGCCGCCCTGGGCAACGCCCACACTGCCACGGTAACCATCTATGACGACGACCACGCAGGCATCTTCACGTTTGAAGTAGAGTCAATGAGGGTGAGCGAGAGCGTGGGCACCATGCAGGTAAAGGTGCACCGGATGTCCGGGGCCAGGGGTAAAGTGGCCATCCCCTACCACACCCTGGAGGGCACCGCCAAGGCTGGGGAGGACTACGAGGAGGTGGCTGGGAAACTGGAGTTCCAGAACGACGAGACCATGAAGCTGTTGGAGGTGAAGGTCATTGATGATGAGGAGTATGAGAAGAACAAGACCTTCATCATCCAGCTGGGGGAGCCTGTGCTGCTGGAGATTGGACGGAAACACGGCGACTCCAATGACAACAAGCCAGCAGGAACTGATGAGGAAGAGGTGTCCAAGATGGGCTGTCCCAGCCTAGGAGAACACACCAAGCTGGAGGTGGTGATCGAGGAGTCCTACGAGTTCAAGaacacAGTGGATAAGCTGATCAAGAAGACTAACCTTGCTCTGGTGGTGGGCAGCAGTAGCTGGAGAGAGCAGTTTGTCAATGCTGTCACTGTCAGTGCAGgtgatgatgatgaggaggagagtggggaggAGCGCCTGCCGTCCTGTTTCGACTACATCATGCACTTCCTCACagtgttctggaaggttctgTTCGCCTTTGTCCCGCCCACAGAGTACTGGAACGGCTGGGCCTGCTTCTTTGTGTCCATCTCCCTGATTGGTGTTCTGACGGCTGTGACTGGGGACCTGGCCTCTCATTTTGGCTGCACAGTGGGGCTCAAGGACTCTGTCACTGCCGTAGTATTTGTGGCCCTGGGTACTTCCGTTCCAGACACCTTTGCCAGTAAAGTGGCGGCCATCCAAGACCAGTACGCTGACGCCTCCATCGGCAATGTAACAGGCAGTAATGCAGTGAATGTGTTCCTGGGCATCGGTGTGGCGTGGACCATCGCGGCCGTCTACTGGAAGACCAAGGGCAAGAAGTTCCTTGTGCAGCCAGGCTCGCTGGCCTTCTCCGTCACCCTGTTCACAATCATGGCGTTCGTGTGCGTCCTGGTGCTGATGTACCGCCGCCGGGCCGGGGTGGCAGGGGGCGAACTGGGGGGCCCGCGGACCGCGAAACTCCTcacctccctcttcttcttctccctctggCTCCTCTACATCATGCTGGCCTCCCTGGAGGCCTACTGCCACGTGCCAGGcttctgagagacagagagagagacagagagagagagacagagagagattgaaggagAAAGCTTGTCTCCAATTGTTTACATGTCTATCCCGCTCATTTCTGTGTACTTTTCTGAGTGTTATGAAGTATttctattgttattattattgctacAGTGGTTACTTGACTCTGAAGACTTCTATCCCATTTAGAATGACGTGGATGGCAGCCTTAGTCATTCTGTTGGAAGCATACTGGGACCAGCTAATGACTTGATGTATATCTTGGGAGGACTCATGCCTTGAGGCGTAGCTTTGTCTAACCAGGCTGTCTGCacaaatgagggggaaaaaatgaccCTTGACTCTTCTGAGTATGCTCCCGTTTTGTTTATAGCCTATCCTGAACCCTTAGCTATTTCAGCCCCACTGCCTCTCTCCTGCATCTCTGCATTCAGATAGAGTACGGCCCTAGTAAATCAGTCTGAATGTCTTGGAGATGACGCACACTGACTCAGAGATCAGAGCCGGATCAGATCTTCCCTCTCCCCGTGTCTTAACGTTGGTTCCTGGTTGGCCAACTCTCGAACCCCTGATGCCCACCAAGCACAATCATTCCCATGAAGATTCTCAGCCTCTGCCCTGAACATTGACTACTTCCCCCACCCccatcctaaccctctctcttatTTTTCAACAACGTCATGTGGTTGTCTTgtggattttttggggggaaatgATGCCAAGATAGTAAAGATGTTTGAAAAATCGAAGTGTTTGTAGATAAAACATTGCCATATATTATCTTGGAACACGGTCTGAAAAGCGAACTTGTGATGGGGGTTGTGAAGTGGAAGAACAACAGTTTGTATGGTACTGCATTAGAATTAGTAGCCACTGAGAGCAAAAAATAATGTCAGATGCCATTCAGGAAATGGAGATCAGTTGAACCAAGCTGTTGCTGTTTGTTAATAAGATTAATGTTCATATTTATTATCTCAAACTATTTATTGTATATCATGTAAAAGATAATACTCCTGCTAGTTGTGTACATCTGGGAGAGTGAGATTGTGAGTGTGTTTTTTTGCATGTATTGAGTGAAGAATTGAATGATAGAAACATTTGGAAGTATTGTATGTAACATTTTAATATGGCTATCATCATGAGTGAAAGTCTAGATGTGATTCCAAGCTAAGCACAGTAAAATATGAGTATCACTGCCTGGTTCCCTGACCAAGACTCTGTCTGGGGACAACCTCTTAGTCTTGTGAGGACTTCTTCCAAtagccttttttttttacaggacaCTAATCAATGTGAGACAAGACCTGCCAGAGTTTTCCTGCTTCTTGAAAAGTGTGCTTTGAAGTATACATTTGGGACCATGTTGAAGCAAATTTTTTTCCTAAGGTTTTGTATGAGTGTGTGAGCGTGTTGATGTGGATAATTCAAGGTATTTGTACTTCTTGTCTTCAGAGTTTGATGGAAGGCATGCCTTTATACCATCAAAAAATGTTTACTCAAGGGGGTATGGATTTCAATGATGAAATGTCTACACTTCTGAGTTATGTTCCCAGGAATCCTCTCCCCAAAATGTTTTCTTAGTCTCCGTCCCGTTCAGGCTTTGAACATATTTCTGCTCCATGTCAAAGCCCTGCATAGGAGTAGAAACAGCGTTTCTAAAGCCTAAAGCGTTTGTTTATTTCCTGAACATAGCACACACATTCCAATATACAGGTTTGAAAATGGTAACAAAATAACTATGacaatactgtactgttatgaAAAAAAAAGACCAAACAAACAAATGATTGCCAAACCTTCCTATAATTTGCATAAGGACCGTGTGTAGACCTCATGTTTGAAATCTAGGATCCTCCGATCCATTCTTTTCATTTCTAGATGTGTTCCTAGTTACATGATCATTGCTGCTTTTATTTGGATTCATATGCACGCTAAatgtatgatcaatggaaataaaaGTTGTTTATTTATCATTTATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015909 lncRNA downstream 16076 43893045 ~ 43893826 (-) True G893009
TU1015916 lncRNA downstream 64206 43843262 ~ 43845696 (-) True LOC110533972
TU1015886 lncRNA downstream 127819 43781694 ~ 43782083 (-) True G892991
TU1015810 lncRNA downstream 130128 43772836 ~ 43779774 (-) True G892919
TU1015875 lncRNA downstream 155352 43754313 ~ 43754550 (-) True G892982
TU1016090 lncRNA upstream 97598 44064447 ~ 44064746 (-) True G893171
TU1016094 lncRNA upstream 115381 44082230 ~ 44082442 (-) True G893175
TU1016121 lncRNA upstream 171462 44138311 ~ 44138523 (-) True G893201
TU1016122 lncRNA upstream 172008 44138857 ~ 44139077 (-) True G893202
TU1016039 lncRNA upstream 198413 44165262 ~ 44165553 (-) True LOC110533988
XM_021618569.2 mRNA downstream 11714 43894085 ~ 43898188 (-) True LOC110533973
XM_021618568.2 mRNA downstream 63814 43838374 ~ 43846088 (-) False LOC110533972
XM_021618563.2 mRNA downstream 159135 43743798 ~ 43750767 (-) True tmem179bb
XR_002475067.2 mRNA downstream 215818 43691234 ~ 43694084 (-) True LOC110533963
XM_021618560.2 mRNA downstream 223298 43681449 ~ 43686604 (-) False LOC110533962
LOC118966632 mRNA upstream 12985 43979834 ~ 43982382 (-) True LOC118966632
XM_021618575.2 mRNA upstream 18982 43985831 ~ 43988942 (-) False zgc:77262
XM_021618576.2 mRNA upstream 18982 43985831 ~ 43988951 (-) False zgc:77262
XM_021618577.2 mRNA upstream 18982 43985831 ~ 43988951 (-) True zgc:77262
XM_021618587.2 mRNA upstream 29282 43996131 ~ 44029040 (-) False LOC110533979
TU1015858 other downstream 198933 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 225982 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 662267 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 839744 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1831955 42076741 ~ 42077947 (-) True G890403
TU1016035 other upstream 232547 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 339370 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 801601 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 1044480 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1780466 45747315 ~ 45750331 (-) False LOC110534046

Expression Profile