RNA id: XM_021618577.2


Basic Information

Item Value
RNA id XM_021618577.2
length 2908
RNA type mRNA
GC content 0.42
exon number 2
gene id zgc:77262
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43985831 ~ 43988951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacaaagacataaaccccgcctatttctacaattgatTTTATTAAAATCTTATTggaaacctaacccttaccccacTGTTAACCTTATGCATAACCTTAAATTAAATTCACAAAATCATGTTTGTAGTTTCAAAAACGTTTTCGATATAGACAATTGGGACTTTGTGGCTGCGTTATCTAGTGGAAACCGATGTGGGGCTGGTGAGAAGCCATCAAAGTACAAGGAAGGTAACGTTACATAGCTAGCTACGTAACCTAACTGGCAAGGTGAGATTAAAGTTAATTTGTACAGAAATAGACTAAACAACCTCAAAAGGTAGCTAGGAAACTTTAGCTTGATGTAGTTAGTTACTAACGGTTAAACATATCTAACATTACTATAACgttgttagcttgctagctagcctacTGCTGGCAGCTTTTCAGTTGGCTAGTTAGCTCGCTCGCTAACCTTACATACACTAGCAAAACTATTTTTCTAGCTACAGTAATCTACATCTACTAAGGTAATTGAGACTGAAGAAGCTGCTCTGTCACCGTGTGAGTGCTGAAGAAGAGTCCTCCAGGAATCCTCATTTACACTTGATACACACCTTTCTCTGAAACAGCTAAGTCAAGACTGTGTCTTGTTAGCTACCATACTAAAATGGTGAAGATATTTGTTGGAAACGTGAATTCCTCAACCACAGAACCAGAACTGCGTACTCTTTTTGAGAAATATGGTCAGGTGTCAGACTGTGACATTCTGAAAAACTATGGCTTCGTGCACATGAATGAGGAGGAGGAAGCCCAGAAGGCAGTGGCAGAACTCCATAAGCATGAGCTGAATGGGGCACCCATCACTGTGGAGTTTGCCACTACGAAGGTCCGCAATGCCACCAAGATCTACGTTGGGAATGTCCCTGAGGGGACCACAGCTGCTAAGATAAGAGAGCTTTTCCAACCGTTTGGTAAGGTGGTAGAGTGTGACATTGTTAAGAACTTTGCCTTTGTGCACATGCAGAGAGAAAATGAAGCCTATGAGGCCATTTCCAAGTTAAACCACTCTAAAATGGAGGGCCAAAAGATCTTTGTATCCATCTCCCGCAACAATCAAGCCAGAAATGGCAGAGGGGATGACTACCCTCACCACTATCCACCTCACCCACACGACGCTCCTCACTACCTCCCCCCTCGAGCTCTACACGGTGACTACTACCCACCTCGTGGTCgctatccccctcctcctccccttcccccacCCCCTCCTAGGGCCTACTACGAGTGTGACCTCTATGAGAGGCGTGTCCTCCATGACCCATACTCTTCCTCCTCACGTTACTATGAGCAGGATCCTTATGAGCGACGGCTTCCCCCACTCCCTCAGCGGCCACTTTCTCCCCCCCTTACTTCCTGTTATTACCGGGAGCGCAGCCCACTGGCTAGCTGGTCTCCACCCCCACCTTCCTCTGCCAGCTATGCCCGAAGGGGTGCCGGGCGAGATTTTGTTGGTGGCAGCTCTGTGCCCCCTCCTTCCTCTATGTGCTATGCTCTGGGCTCAGGCTTTGATAAGGATGATTACTTTGAGGAGAAGTACTCCAATGGTTTTGGTAGGGGCTACTAAGGGcactttttggaaaaaaaaatcggTGGAAGATGTTGTGTATGAGTATGTTGGCAATGAGTGCGCAGTTTTTTAGAAAAACGGGTAATAGGAACAATACCGTTCATTCATAAAGCTTACTTGTCAAGTCAAGCAGCACACTTAATTGATTTTGACCAGTTTTTGTTGATCATGAATAATCACCAGCCATATCAGCAGTCTTTGAATGCGTTTTATATTAGTTTTTCATTGTTGCCAGATTTTTAGACTTGAGGTGGTAAGCTTGTGTCTTTGAATGTTTGTTAATATTAATGTCATATTTTGAATTTTTGAAGGAGTTtaggattttttaaaatgtagaatAGGAATGATGTTTTGTGTAGTCGGCCCTACATCAGGGGTCCCCAATTACATTAAGCCGTGGACAGATTTTTCTTTCAGCGGAGGGTTGGAATGCCGGAACATAGTTataaataatttgtacactgaAAATTGACCTCAAGTATCCAAAACAGATCatatttgacaaaaacagaatcatttcaaaccttaaTTACATAGGAATATGATCACATATACTTGTGAACATATTTCCTAAATCGGCAAATAAAATCATTACGGGCCACCTATTGGGGAATCCCGCCCTACATTGAGTGGATGACATTGACTAAAACTATTTCTGCTTTTTTGGAGACAGTTTGAAGGGAAATTGATATGTAATTATCAGTGGTAAGTTATTTATATCATACTTGTCTATCACATTTATTTTGTTGTCAAGTCCTGATACACTTTTCTCAAATACGTTTTTATTTTCTTCCTGAGGATTTTAGTCCCCTAAAATCCTTCTCACTCAGGTTTTTGTCATTCACCACAATTCAAAGGTTGGGGTGTTTGTTGTGTGCAAACTAGCTGACTGACTAACCAAGCACACTGCATCAGCTGACCAAGCTCATCTCATCTGAAGGCCTGGCCACATTCGGTGCAGCATCGTAGGATAAAGCATTGTCTCCGAAACGAAACCCGATACGACCGATTCATCGACTTGACGACTAAATAAAAAGATAACCACCGAAAAATTGTTGCACCTCCGGAGTCACAGCCTGTATATCTATTTGACATTATGCATATGAATCACTCGCTGTCCGTAGAGTAACAAGTCCTTTTTGTTTTTGTATAAAATGGATGTAATCCAAGATAAAAATAATTGAGAAATCTACGCCTATAAGGACAAATCTGACTTGTTTTTATTAGAAGAAATACATGAACAAATGTCTTGATCAACCGCTGTTGTCATTTGGCCGCTTAAATAAATGTTCGACCTCTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015978 lncRNA downstream 8705 43884603 ~ 43977126 (-) True G893071
TU1015909 lncRNA downstream 92005 43893045 ~ 43893826 (-) True G893009
TU1015916 lncRNA downstream 140135 43843262 ~ 43845696 (-) True LOC110533972
TU1015886 lncRNA downstream 203748 43781694 ~ 43782083 (-) True G892991
TU1015810 lncRNA downstream 206057 43772836 ~ 43779774 (-) True G892919
TU1016090 lncRNA upstream 75496 44064447 ~ 44064746 (-) True G893171
TU1016094 lncRNA upstream 93279 44082230 ~ 44082442 (-) True G893175
TU1016121 lncRNA upstream 149360 44138311 ~ 44138523 (-) True G893201
TU1016122 lncRNA upstream 149906 44138857 ~ 44139077 (-) True G893202
TU1016039 lncRNA upstream 176311 44165262 ~ 44165553 (-) True LOC110533988
LOC118966632 mRNA downstream 3449 43979834 ~ 43982382 (-) True LOC118966632
XM_036990384.1 mRNA downstream 18982 43909902 ~ 43966849 (-) False LOC110533974
XM_036990385.1 mRNA downstream 18982 43909902 ~ 43966849 (-) False LOC110533974
XM_036990386.1 mRNA downstream 18982 43909902 ~ 43966849 (-) True LOC110533974
XM_036990387.1 mRNA downstream 45018 43909902 ~ 43940813 (-) False LOC110533974
XM_021618587.2 mRNA upstream 7180 43996131 ~ 44029040 (-) False LOC110533979
XM_021618580.2 mRNA upstream 7180 43996131 ~ 44029041 (-) False LOC110533979
XM_021618585.2 mRNA upstream 7180 43996131 ~ 44029041 (-) False LOC110533979
XM_021618588.2 mRNA upstream 7180 43996131 ~ 44029041 (-) False LOC110533979
XM_021618591.2 mRNA upstream 7180 43996131 ~ 44029041 (-) False LOC110533979
TU1015858 other downstream 274862 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 301911 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 738196 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 915673 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1907884 42076741 ~ 42077947 (-) True G890403
TU1016035 other upstream 210445 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 317268 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 779499 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 1022378 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1758364 45747315 ~ 45750331 (-) False LOC110534046

Expression Profile