RNA id: XM_021618580.2


Basic Information

Item Value
RNA id XM_021618580.2
length 4711
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110533979
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43996131 ~ 44029991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGATTTCACACTGGGTTGTTTGGCCAGCTGGAAAATAATCAGCGTAGACGCAGTCGAAACCTGGGGGGCGCTTCAACTCTAGTTAGTCTATAGCCCACCCGAGATTCAGCGACCCAGCAAATTGAGCATAGCGCGGAGGGACAAACTCGGAATTAAACTTGATTACATATGTCGCTTTAGCTAGTTATTCTGATATTCAAACCTGCTAGTGTAGACAACGAGCTACAACTTATATACCACATTTATAAAAGCAAGACCAAAGACGCACCGAGCGAGCTAACTTACTGGCCAAGTAACATAGCAAGCTAACTAACGTACGTAGCTGGTCAGGAAGAATACAGGACGTTGCGGTTGTTTTGCTCGTGTACCATTTTAGCTAACCGGCTAGTCGGCAGTTCATTTTCAGTTTAACTCGCGGATTCGTACCTCTGCCGTGGAGGGAAACTGGCCTACGCTATCTAGCAATCTAGAGTTGGCAAAGCAAGCTCGCTGATAACGTTTTCATCATTACAACGGAGGGTCGATAGTGTATTATAGTTAATGATATTTAACTAGCGAGCGTTTTTTTTATCCCTCTAAATAGGACGTTTGGACTGCTGCTATCGGCGTGGCCAAAGTTTGGTAGAATCCCCGGACTAGATTTGACCGTCTACTTGTGGGAACAAACCTCGCTTTGGGTGGAGCTTTGGCTCGTATAGCCCTCTAACTTGACAGCTCATCCTTCCACTGCACAGCTCCGTGTGTAACTGGCAGATCACTTTTCTCCATTGAGTGGAATAGGCGTACCAATGTAAGATAGCTTGTGAATGCAGGGTTACCTTTTCACGTGAATAGCTGTAATTCCAGATACTTGTGAATCCAGAACTTTGAACAGTACTTATATTCTATTGATAGGTAGCTAACTACTAACGTTATATTCCTACTACCTGGACTAGGTATGGTATTTCATTGACGATTGAGTAACTTCAGCTAGctggatagctagctagttagctagctagaactttagctcgctagctaactagctagtttaATTActcctagctagctaacgttagccccgAGCTAAGGCTACGTATGAGTAACTTTTTGATAAGTTGGCTAGCTAACTAAATTAGCTACACAAACAATATAGTCCCCAGTTCAGCAATAACAAACACGGAGGACAGATGTACAGTGAGTTTTGAGATTCTGTTAAGAAGTTACCCCCCGAAAATCTGTTAAGATGTCAACCCGGACGCCATTATTAACAATTGAACATTCGTCAAACCAGTCTCACTCAGAGTCCAAGGCAGGCGGGCGTCCTAATATGCCGCGGTGCCGGAATTCTGTCGCCACGACGCCAGACGAGCAGCCACACATTGGCAACTACCGGCTGCTGAAAACCATCGGCAAGGGCAACTTTGCCAAGGTCAAACTGGCTCGTCATGTCCTCACAGGGAAAGAGGTGGCTGTGAAAATCATAGACAAAACGCAGCTCAACTCTTCCAGTCTCCAAAAGCTGTTTCGTGAAGTGAGGATCATGAAGCTGCTCAATCACCCAAATATCGTTAAGTTATTTGAAGTTATTGAGACAGAGAAGACGCTCTACTTGATCATGGAGTATGCCAGTGGAGGTGAGGTGTTTGATTACCTTGTTGCTCACGGgagaatgaaagagaaagaggccaGAGCCAAATTTAGACAGATCGTGTCAGCGGTACAGTACTGCCACCAGAAGTGCATCGTACACAGAGACCTGAAGGCAGAGAATCTACTCCTAGATGCTGACATGAACATCAAGATCGCAGACTTTGGTTTCAGCAATGAGTTCACCATGGGGAACAAGCTGGACACGTTCTGTGGCTCTCCTCCCTACGCTGCCCCGGAGCTGTTCCAGGGGAAGAAATATGACGGCCCCGAGGTGGACGTCTGGAGCCTGGGGGTCATCCTCTACACACTGGTCAGCGGATCTCTGCCTTTCGACGGACAGAACCTAAAGGAGCTGCGCGAACGGGTTCTGCGGGGGAAGTATAGGATTCCCTTCTACATGTCCACAGACTGCGAGAACCTGCTCAAGAAGTTCCTCATTCTCAACCCAACCAAGAGGGGCAGCCTGGAGCAGATCATGAAGGACCGCTGGATGAACGTAGGCCATGAGGAAGAGGAGCTGAAGCCCTTCATCGAGCCCCAGCCAGACTACAAGGACCCCAAGAGGACAGGTCAGCACCCCGACCGAGCGGGGGGGTGGAAGAGAGATATCATGTTGCAGATGGGCTACTCTGCGGAGGAGATCCAGGACTCGCTCGTCAACCAAAAATACAATGACGTCATGGCCACATATCTATTACTGGATTACAGGAACTCTGAGaTGGACGAATGCATCAGCCTATCAATGAAACCCCGCCCAGGAAGTGACCTCACAAACAGCAATGCCCAATCCCCTTCTCACAAGGTACAGCGCAGTACCTCATCCAATCAGAAGCCCCGGAGAGCAACAGATGCAGGTTCTTCAGCTTCTAAGCGTTCCCAGGGCGACAATAAGCACACAGCAGAGGATTATGGGAGGAAAGGTTCTGGCACTGGCAGCTCCACTAAAGTCCCTCCCAGTCCCTTAGCTGCAGCAGATCGTAAGAGGAGCACCCCAACCCCCTCCACCAACAGCATCCTGTCCACTGGTACGAGTCGCAGTCGAAACTCGCCAGTCCCTGAGAGAGCCACACTTGGGGTCCAGAACGGAATGGACAGCTTAACCACCCCAGGGTCCCGCGCCTCCACAGCCTCGGCAGCCGcagttctctcttcctcctcccgccCCCGACACCACAAGTCCCTGTCCACCTCTGCCCATCCCACCCCCTCAGACATCCACGCACACCGGCCCAGCACTGCCCCTCTGAGAGTACCAGTGGCGTCTCCCTCTGCCCACAACGTCAGCAGTTCCACGGCGACTGAACGATCCAACTTCCCCAGAAATGTGGCCACCAGAAGCACTTTCAGTGCTGGGCAGCAGAGGGCGACGCGGGACCAGCATGCCACCACCTACAATAGTCCCCCagcatccccctccctctcctatgggaacagccagGCCCGAAGAGCTGGGGGCACTGGTATCTTCAGCAAGTTCACCTCTAAATTTGTGCGCAGAAATCTCTCATTCAGATTCCCCAGAAGGAGCCCGTATGAGGGAGAGGGTCGAGATGAGGCCAACAGACCCATGTTGACCACTGCTGAGAAGCTGGAGAAGGGCACCCTGGGCTCTGCAGGAGATGAGAACAAGGACTCCCTGTCCTCCACCTCTACGGTGCCCAGCACCACGACCCCGGGCCTGACCTCCAAGGACAACAAGCCCCGCTCGCTGCGCTTCACCTGGAGCATGAAAACCACCTCCTCCATGGAGCCCAACGAGATGATGAAGGAGATCCGGAAGGTTCTGGACTCCAACAGCTGCGAGTATGAGCTGCGAGAGCGCTACatgctgctgtgtgtgtctgggaaTCCCGCCCGTGACGACTTTGTCGAGTGGGAGATGGAGGTGTGCAAGCTGCCCCGCCTCTCCCTTAACGGGGTTCGCTTTAAGCGCATTTCTGGCACATCCATCGCCTTCAAGAACATCGCCTCCAAGGTTGCTAATGAGCTCAAACTGTGAGCTTGTGGAAGAGGGGTACTGATGATAACAATGAGTTGGACGGTGGATGGAGACAGACTGGAGCACAAAGGCAAAGAGGCTGAACTTTGAGACTGAACTGAGAGCTTTTGAGATGAAGGCAAAGGAGGATGGAGAGACTttttgggtgggtgggggggagcAAAGTGGCTAGGGGGAGGTTGTGTGTGTAAAGACCGTTTTGAGGGGATTGTTAATTTTCTTGGGAGGGGATGTTTTTTCAGTTTGGGGTTTCTGGCCCCTCTCGCCCCTCTGACTTTTCTGTTGTCTTCTGAGACCGTTTTGTTTCTCTTAAACCTCACAATCATCTTTTTCCAAAATACATTTATTGGTGGAAAATATGAAAGGAAATGagttaaaaaatgtatgaactgATTTGTAggttttcttatttttattttgagcCCAAAATGGCCCTGGACTCAGCCAGCTGTAACCCTCAGGCCTTTCTCCCTTGCTTATCCTGCACCAAGCCCAATCTATGGTCTAAGCACCATGTTACTGTACTTGAGTATCTTGCCCCCATTTTCAGCTGTCTGTTTTGAACAGATGAAGAGAGCTGCAGTTTGACACTGAATGTTCAACATGATTAGACTAATGTATCTGAGGTACAACGCATATTCACTACAGCTGTAAATTGGTTTTCACATCATGTTCTAATTTGAATCAGCTAATGACAGTTGCACAAGGTGTTTCCGTGTGGTCCAGAAAGCTTCTGCCATTTTTTACATCATTGTACAGTGTCTTACTTGAGGCTACCATGGACATGCAGACTTGAACTCTTTGCACTCTGATTGCGAGCCTTCACCTGCCTGCTCCTCAAGCCCCCTcaaacatcttttttttttttttttttttttttttatacagcaGGGGTAATTTATCTGATTAAATAATTAAGGGCCAATTGATAATTATTGGTGGATTGTAATGTAATTAAGAGTTGCTGGTTGGTTTCAATGTGCTGCACTGGAATGTCTGAGTCAGAGTTCCTTTGCCTTTCTCTGGAGAAAATAATTATTAATATTGTTATTATAAGAATAAACAAAGTTGGATGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015978 lncRNA downstream 19005 43884603 ~ 43977126 (-) True G893071
TU1015909 lncRNA downstream 102305 43893045 ~ 43893826 (-) True G893009
TU1015916 lncRNA downstream 150435 43843262 ~ 43845696 (-) True LOC110533972
TU1015886 lncRNA downstream 214048 43781694 ~ 43782083 (-) True G892991
TU1015810 lncRNA downstream 216357 43772836 ~ 43779774 (-) True G892919
TU1016090 lncRNA upstream 35406 44064447 ~ 44064746 (-) True G893171
TU1016094 lncRNA upstream 53189 44082230 ~ 44082442 (-) True G893175
TU1016121 lncRNA upstream 109270 44138311 ~ 44138523 (-) True G893201
TU1016122 lncRNA upstream 109816 44138857 ~ 44139077 (-) True G893202
TU1016039 lncRNA upstream 136221 44165262 ~ 44165553 (-) True LOC110533988
XM_021618576.2 mRNA downstream 7180 43985831 ~ 43988951 (-) False zgc:77262
XM_021618577.2 mRNA downstream 7180 43985831 ~ 43988951 (-) True zgc:77262
XM_021618575.2 mRNA downstream 7189 43985831 ~ 43988942 (-) False zgc:77262
LOC118966632 mRNA downstream 13749 43979834 ~ 43982382 (-) True LOC118966632
XM_036990386.1 mRNA downstream 29282 43909902 ~ 43966849 (-) True LOC110533974
XM_021618598.2 mRNA upstream 50845 44079886 ~ 44085270 (-) True LOC110533984
XM_021618600.2 mRNA upstream 94937 44123978 ~ 44134653 (-) False LOC110533987
XM_021618601.2 mRNA upstream 94937 44123978 ~ 44134653 (-) True LOC110533987
XM_021618603.2 mRNA upstream 113703 44142744 ~ 44151557 (-) False LOC110533988
XM_021618606.2 mRNA upstream 113703 44142744 ~ 44151557 (-) False LOC110533988
TU1015858 other downstream 285162 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 312211 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 748496 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 925973 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 1918184 42076741 ~ 42077947 (-) True G890403
TU1016035 other upstream 170355 44199396 ~ 44209264 (-) True LOC110533117
TU1016171 other upstream 277178 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 739409 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 982288 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1718274 45747315 ~ 45750331 (-) False LOC110534046

Expression Profile