RNA id: TU1014803


Basic Information

Item Value
RNA id TU1014803
length 2589
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110533983
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44077660 ~ 44081410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGGAATTTATGAAAACCATTTATCACATACACAACCGGTGCGGTAACTACCGTCTACTCTTCGTGGTTGGAAAAGGTCACGAAACCGCGTACGACAAGAAACAAGGTACTCTAGGTGATCACTGACAGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGGGAGAAGTTAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTAGTGCTGAAGAAGGATGAGGAGCTATTCCGGGACTGGCTGAAAGATACATGCGGGGCCAATGTCAAACAGCAGGGCGATTGCTACGGCTGCCTGCGTGAGTGGTGCGATTCTTTCCTGTAGAGAAGCTATTTTATCCAGTTTCAGTTTTTCCAATTTCTAAATCGCAAACATCCATTTACCTCTACTGTGATCTCACATCAACTTACACCTCATATGGACTCTCACTGCACATGAGGAAGTTAAGCAAAGTCGGACGTCGTAAGACCCAGTTATTTTTGAACTATAGTCTTACAGACTTAAGAATGCTTTTAAAATCAGTAAGACATACTTTGCTGCAGTCACCCATGGGGTTGTTACACCCAACTGTGTAGCTCTGTAATGCTGACCTTTTCTATGATTAAAATATTTGGCTGCACAGAAACGTTGGGAATGAGCTCATTTTGGTTTTCCTGCAATGTGTTATTTCAATTTGTTCTCTGTCAAAGGAAAACTTATCAACACGGTCCCTTCATATAACTAACTAATGTTTGTACTCATCTCCAACTGACTGTTTGCCcgtgaatttatttaaattaactTATAATAGGATTTTAAACCATTTTAGATACCAGATAGCTTTAACATCTATAGTTAAAATGTCAAGatgttactgttcatttttacaaAACAGAGTTCACAGGAAACACTAAGGTGTAATTGCTCCATGTTATCTTGTGTTTGTTTTTGTCAAAGTTGAAGAGATGCCTCAATGTtgtaataattttttttttttatccacgaTCTACTTAAGTTATCTACCACAAATCACCTAATTTTCACACACAAAATGAAAGCCTAAAGTAAACCCACGAAAAGGAGCACTGTTGTTCCAGGAAGTAATTTCTAGGCATGCGCGTTTAATTGCTGAATGATGGTTTTTCTGAAATACTGGTTCATGTTTTTGTGTTTTGACTGTGAAAGCATATtcgtttttatatttttcttttgAAATGAACAAAACCAACTGCAAGATCTGGACAATTCtgggtttgttttgtttttgccatttttgggggggaaataaaatcacaaatgaaatgcaAACTTGTTTTTGGTGACAGTGTTTATTTTAATCTTTGATTACCGACGTCTCCTTTTATTCAGAGCTCTTTATTTTTAAGAAATATAAACAGTGAAGGTCTACATTGTAACATTGATCTTAAGAGTGATAATATTCCTAAGCAACCTTAAAGACTTGGTCTCGAAATGTACCTCTTAGTTAATGATATTGTCATAAAGGCATAACTTATTTATTATTAGGCTCCCACTTGACAAATTAAACCACTTATCAtttatccaggctgtatcacaaccggctgtgattgggagtcccatagggcggcacacaattcgcccagcgtcgtccgggtttggccgttgtaggccgccattgtaaataagaatttgttcttaacttgcctagttaaataaataaacatcattGATCATTTATTGGGAACCTCTCTTTTTAGATCACTGATCCTGTGTTAAGGCAGCTTACCACTTGTACACACCAGTGGAATTATTTGGGTCAGTGTGTATTGCCTTGTCCTCTTAATACCCTCTtactgggcggcaggtagcctagccttttggttgctagatcaaatccccaaggtaaaaatccgtcgttctgcccctgaacaaggcagttaacccactattcctaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaagattCAATTACTGATCCAGTGGCACCTACATTTCTGCAACAAAGATTAAAAAAGTGACATCCAGGACTGTCTGTCGCACACAAACTATTTAACAAAGGCTGATTAGGGCAGGCAATGGATATTTACCATGAAGTGTGTATTAAAAGTTACAAATAATTCCAATTTGTGTTGTCACCCCTCCATCATCCATCTTGCCTATTGAGTTGATTTCAGAAATGAGCTATTTCATGTTGCATAATATTTACAGTATATCCACTTGTATGTTTTTCTTCAGGTTCAAGATTGTTAGCGTTCTTGGTGTGTTTTAGATGTGTATTTGTTATGAAAGGCTATCATGACTCATGTTAATGGTTACGCATTGTTTGCATTTTTGTCTGGACATTGTATTTCACAACATCCTGTGGCTTGTCTCAAAGGAGTGCACAGAAGAGCTTCTTCTCCCTGAATGGGTTCTCTGAGGTGGGCACAGGGGTGATGAGGGGGTCCTCAATCGCGTGGTTATCACAGTATGCCATCAGGTCTGCAGCCGCCTTTG

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014763 lncRNA upstream 69988 44006821 ~ 44007729 (+) True G891988
TU1014634 lncRNA upstream 295552 43781958 ~ 43782165 (+) True G891884
TU1014615 lncRNA upstream 321177 43754897 ~ 43756540 (+) True G891866
TU1014596 lncRNA upstream 335231 43741930 ~ 43742486 (+) True G891854
TU1014595 lncRNA upstream 345686 43731639 ~ 43732031 (+) True G891853
TU1014812 lncRNA downstream 4283 44085693 ~ 44086002 (+) True G892033
TU1014813 lncRNA downstream 4675 44086085 ~ 44086339 (+) True G892034
TU1014837 lncRNA downstream 56189 44137599 ~ 44137831 (+) True G892054
TU1014830 lncRNA downstream 69355 44150765 ~ 44155040 (+) True G892048
TU1014852 lncRNA downstream 83852 44165262 ~ 44165505 (+) True G892067
XM_021618595.2 mRNA upstream 605 44067882 ~ 44077112 (+) True LOC110533982
XR_002475069.2 mRNA upstream 24722 44036579 ~ 44052995 (+) False LOC110533981
XM_021619838.2 mRNA downstream 15850 44097260 ~ 44100856 (+) True bscl2
XM_021618599.2 mRNA downstream 26923 44108333 ~ 44123770 (+) True LOC110533985
XM_021618611.2 mRNA downstream 178103 44259513 ~ 44268977 (+) False LOC110533994
XM_021618612.2 mRNA downstream 178103 44259513 ~ 44268977 (+) True LOC110533994
XM_036990393.1 mRNA downstream 202408 44283818 ~ 44285540 (+) True mrpl49
TU1014709 other upstream 137160 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 334227 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 336687 43738585 ~ 43741030 (+) True LOC110533965
TU1014606 other upstream 340190 43733557 ~ 43737527 (+) False LOC110533965
TU1014589 other upstream 364635 43712545 ~ 43713082 (+) True G891847
TU1014996 other downstream 574148 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 927424 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 1472827 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 1488042 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 1508949 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile