RNA id: XM_036989351.1


Basic Information

Item Value
RNA id XM_036989351.1
length 1316
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110533117
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44199178 ~ 44209264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTAGGGGTAAAATTTGTCTGCAGGTCACTACAGGGGAGACAGGTTGGGGTCCATTCCATTTCAGACAACACAGTGACTTTACCCTCATGGCAAAGAGGATTGGAAAGGACTTGAGTAACACTTTTGCCAAACTAGAAAAACTCACAATATTTGCCAAAAGGAAATCCCTCTTTGATGACAAAGCTGTGGAGATTGAGGAGTTAACCTACATCGTTAAAACGGACATAAACAGTTTGAATAAACTGATAGCACAGCTGCAGGGCCTTGTGCGCTCCAGACAAAGTCAGAATGGCAAACATCTACAGACACATTCCAACACCATCGTTGTCTCCCTCCAGTCAAAACTGGCATCAATGTCAAGCGACTTTAAGTCCGTGCTGGAGGTCAGGACTGAGAACCTCAAAGAGCAGAAAACTAGAAGAGATCAGTTTTCTCAAGCTCCAGcatcctcctcccatctccacgtCAGCAACTTCAATGTGGGAAAACTCGTATCAGCTCTAATGTACAAAACAACAGGAAACAGTACAAGTGGTCTAACTCTTGTGGCGTGTGTTGTACAGGATTCGTACATCCAGAGGCGCGCAGACACCATGCAGAACATAGAGAGCACCATCGTAGAGCTGGGCTCTATATTCCAGCAGCTGGCCCACATGGTGAAGGAGCAGGAAGAGACTGTGCAGAGAATTGATGCCCACGTGAAGGACAGCCAGCTCAACGTAGATATGgcacattcagagatcctcatgtACTTTCAGTCTGTCTCATCCGACCGCTGGCTCATGGTCAAAATCTTCCTCATCCTCATAGTATTCTTCATCATCTTTGTGGTCTTCTTTGCCTGAGGACCAGGAGGCACTTGGCTAAGAATGATAGGAAGGAGGATGAGAAAGGGAGGAATTGTgctggaggagagtagagaggatgTGTGGGGAACAGAGGAGTAGCTGGATGGGTGGTGTGTTCCCTCTTTGTTTCTCCTTTGTTTTTCAGACTTTCTCATGTGATTTAAAGAAAAGACCACTACTAACAAACAATTCTATATGTGTCAGGATGCAGTTGTGTTAATAATAGCTGTATGGGAGGTAGAAAGGAGATTAAAAATATTATTATCCTCCATTGTATGGAGTaaatagatgatgatgatgatggcaggATAGAAGACTATATTGCAGTTGGATTAAAACTTTATTTTTGTTTTCAaatcaaaataaacatttcatttttatttcacctttatttaaccaggtaggccagttgagaacacgttctcatttacaactgcgacctggccaagataaagcaaagcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016038 lncRNA downstream 1288 44197521 ~ 44197890 (-) True G893126
TU1016032 lncRNA downstream 1896 44196942 ~ 44197282 (-) True G893120
TU1016150 lncRNA downstream 17243 44181605 ~ 44181935 (-) True G893230
TU1016149 lncRNA downstream 17605 44181345 ~ 44181573 (-) True G893229
TU1016148 lncRNA downstream 17962 44181014 ~ 44181216 (-) True G893228
TU1016186 lncRNA upstream 22117 44228962 ~ 44238819 (-) True G893265
TU1016190 lncRNA upstream 35423 44242268 ~ 44242544 (-) True G893269
TU1016178 lncRNA upstream 49944 44256789 ~ 44258893 (-) True LOC110533992
TU1016196 lncRNA upstream 63386 44270231 ~ 44270447 (-) True G893275
TU1016202 lncRNA upstream 78263 44285108 ~ 44285959 (-) True G893280
XM_036990392.1 mRNA downstream 19801 44172874 ~ 44179377 (-) True LOC110533989
XM_021618608.2 mRNA downstream 20186 44172874 ~ 44178992 (-) False LOC110533989
XM_021618607.2 mRNA downstream 20187 44172874 ~ 44178991 (-) False LOC110533989
XM_021618602.2 mRNA downstream 33612 44142744 ~ 44165566 (-) False LOC110533988
XM_021618605.2 mRNA downstream 33612 44142744 ~ 44165566 (-) False LOC110533988
XM_021618610.2 mRNA upstream 6410 44213255 ~ 44218956 (-) True LOC110533991
XM_021618609.2 mRNA upstream 12202 44219047 ~ 44237878 (-) True LOC110533990
XR_005053672.1 mRNA upstream 41419 44248264 ~ 44258281 (-) False LOC110533992
XR_005053673.1 mRNA upstream 45817 44252662 ~ 44258496 (-) False LOC110533992
XR_005053674.1 mRNA upstream 45817 44252662 ~ 44258525 (-) False LOC110533992
TU1015858 other downstream 488209 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 515258 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 951543 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 1129020 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 2121231 42076741 ~ 42077947 (-) True G890403
TU1016171 other upstream 99374 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 561605 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 804484 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1540470 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1540470 45747315 ~ 45747953 (-) True LOC110534046

Expression Profile