RNA id: TU1016035


Basic Information

Item Value
RNA id TU1016035
length 1354
RNA type TUCP
GC content 0.46
exon number 8
gene id LOC110533117
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44199178 ~ 44209264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGATTTTCCCAGTCGGAGatagttgttttgaacgcactgaagtcggagatttcctAGTTCCCATTTGTTTTGAACGCTGTATTATATTAGAGAAGCAGTTTTAGCCTATCTTCGTATTATACTGTATTTGGTGGAGTGATCAAATAAAAATGATAAATAAGTAGCGAGCCATATACTTACCGGTGATGTATCTGAGCATCCATGAACACGTGTCATTGCCACGGTCCTAGGAAAAGCCAGGAAGGGGTGTACCTAGGGCTTGCCCAGACCCAGTCACTGCTGATCCAGCCACAGGACCCACAACTCACAGCGCCCAGTACACCTCCACCTGACCCATGGTGGACATAAGCAACATGTCTGGCAGGGATCGCACCAATGAGTTCCAGTTTGTCTGCAGGTCACTACAGGGGAGACAGTTGCCAAAAGGAAATCCCTCTTTGATGACAAAGCTGTGGAGATTGAGGAGTTAACCTACATCGTTAAAACGGACATAAACAGTTTGAATAAACTGATAGCACAGCTGCAGGGCCTTGTGCGCTCCAGACAAAGTCAGAATGGCAAACATCTACAGACACATTCCAACACCATCGTTGTCTCCCTCCAGTCAAAACTGGCATCAATGTCAAGCGACTTTAAGTCCGTGCTGGAGGTCAGGACTGAGAACCTCAAAGAGCAGAAAACTAGAAGAGATCAGTTTTCTCAAGCTCCAGcatcctcctcccatctccacgtCAGCAACTTCAATGTGGGAAAACTCGTATCAGCTCTAATGTACAAAACAACAGGAAACAGTACAGCCTGACTTACTACTCTCTCTTGTAGGATTCGTACATCCAGAGGCGCGCAGACACCATGCAGAACATAGAGAGCACCATCGTAGAGCTGGGCTCTATATTCCAGCAGCTGGCCCACATGGTGAAGGAGCAGGAAGAGACTGTGCAGAGAATTGATGCCCACGTGAAGGACAGCCAGCTCAACGTAGATATGgcacattcagagatcctcatgtACTTTCAGTCTGTCTCATCCGACCGCTGGCTCATGGTCAAAATCTTCCTCATCCTCATAGTATTCTTCATCATCTTTGTGGTCTTCTTTGCCTGAGGACCAGGAGGCACTTGGCTAAGAATGATAGGAAGGAGGATGAGAAAGGGAGGAATTGTgctggaggagagtagagaggatgTGTGGGGAACAGAGGAGTAGCTGGATGGGTGGTGTGTTCCCTCTTTGTTTCTCCTTTGTTTTTCAGACTTTCTCATGTGATTTAAAGAAAAGACCACTACTAACAAACAATTCTATATGTGTCAGGATGCAGTTGTGTTAATAATAGCTGTATGGGAGGTAGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016038 lncRNA downstream 1506 44197521 ~ 44197890 (-) True G893126
TU1016032 lncRNA downstream 2114 44196942 ~ 44197282 (-) True G893120
TU1016150 lncRNA downstream 17461 44181605 ~ 44181935 (-) True G893230
TU1016149 lncRNA downstream 17823 44181345 ~ 44181573 (-) True G893229
TU1016148 lncRNA downstream 18180 44181014 ~ 44181216 (-) True G893228
TU1016186 lncRNA upstream 19698 44228962 ~ 44238819 (-) True G893265
TU1016190 lncRNA upstream 33004 44242268 ~ 44242544 (-) True G893269
TU1016178 lncRNA upstream 47525 44256789 ~ 44258893 (-) True LOC110533992
TU1016196 lncRNA upstream 60967 44270231 ~ 44270447 (-) True G893275
TU1016202 lncRNA upstream 75844 44285108 ~ 44285959 (-) True G893280
XM_036990392.1 mRNA downstream 20019 44172874 ~ 44179377 (-) True LOC110533989
XM_021618608.2 mRNA downstream 20404 44172874 ~ 44178992 (-) False LOC110533989
XM_021618607.2 mRNA downstream 20405 44172874 ~ 44178991 (-) False LOC110533989
XM_021618602.2 mRNA downstream 33830 44142744 ~ 44165566 (-) False LOC110533988
XM_021618605.2 mRNA downstream 33830 44142744 ~ 44165566 (-) False LOC110533988
XM_021618610.2 mRNA upstream 3991 44213255 ~ 44218956 (-) True LOC110533991
XM_021618609.2 mRNA upstream 9783 44219047 ~ 44237878 (-) True LOC110533990
XR_005053672.1 mRNA upstream 39000 44248264 ~ 44258281 (-) False LOC110533992
XR_005053673.1 mRNA upstream 43398 44252662 ~ 44258496 (-) False LOC110533992
XR_005053674.1 mRNA upstream 43398 44252662 ~ 44258525 (-) False LOC110533992
TU1015858 other downstream 488427 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 515476 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 951761 43193682 ~ 43247635 (-) True LOC110533954
TU1014179 other downstream 1129238 43059010 ~ 43070158 (-) True LOC110533946
TU1012992 other downstream 2121449 42076741 ~ 42077947 (-) True G890403
TU1016171 other upstream 96955 44306219 ~ 44308933 (-) True LOC110534000
TU1016497 other upstream 559186 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 802065 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1538051 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1538051 45747315 ~ 45747953 (-) True LOC110534046

Expression Profile