RNA id: XM_021618618.2


Basic Information

Item Value
RNA id XM_021618618.2
length 3577
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC110534001
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44312153 ~ 44319559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAGCTGTGCCGTGCTCGCGTGACATCATTATTCTGCGACTCTACCGGAAGAGACGTGGCAAAATGTCAGCATCTGAAAACATGCGCATTTTCTAGATTTAGCTGACCAAGTTGGTAGAGCGGAACATCAGTATTTTTACAACCCTTCCTTCATACGAAAAAGCATCGAGGAGAAAGCTTGTGTAACAGtactacagacagACCATGGGTCTGTGCAAGTGTCCTAAGAGGAAGGTGACCAACCTGTTCTGCTTTGAACATCGGGTGAATGTTTGTGAGCATTGCCTGGTCTCCAACCACAACAAGTGTATAGTGCAGTCCTACCTCCAGTGGCTTCAGGATAGTGATTACAGCCCTAACTGTCGACTGTGTAATAACCCACTGATCTCCCAGGATACTGTCAGATTGGTCTGCTATGATGTATTCCACTGGGCCTGTCTTCATGACCTGGCAGTCCGGTtgcccctacacactgctcctgcaGGATACCAGTGCCCCAGCTGCCAGGGTCCAGTGTTTCCCCCCTCCAACCTGGCCAGCCCAATAGCTGACATGCTGAGGGAACAGCTCTCCTTAGTCAACTGGGCAAGAGCTGGACTAGGCCTACCTCTGATTGATGAACCTGTAGAAGCTATTCAAGACAGCACACAGGATGTCACTGATTATGCTGACTGGTCCACATTTGATGCCCCAGCATTGGACACCACTGAAGCTTACCCCACCCACTCCTACACCCCCAGCCCGGCCCCTACTTTAGTTCCACCTCCAGTACAGGAAGATCATGGAAATCTCGACAACAACGGGGGGATGGTAGCACAAGAACAACACTCTGGGGTCAACATGATCACTGCAACCTCCAGTGACACAATCACCCTACACACAGCATCAACCCCAAGGAAAGTCTATGACACACGGGACTCTGGTTCCAGCTCTAGTTACAGCGCTGGACACAGCTCTGTGACACAGATCGACTTTGACGACGACAAGTACCGGCGACGACCAGCACTCAGCTGGTTTGCACAGATTCTCAAAAACCGGACGGGTTCAAAGAGGACAGGCCTGTCCTGGAAACAGAGGGTCTTCATGCTCCTTCTGGTTGGAGTTCTGGGATTCTTTACCTTGATTATCATTATGGCTAAACTGGGCCGTGCTTCAGCTGACTCCGACCCCAACTTAGACCCCCTACTAAACCCCAACATCCGAGTGGGCAAAAACTGACCAGCACCCAACTCCATGTCCTGGTGAGTGTTGAACATGGGGCCGATCTAAGTCCATCTAAGATGGTGGGACCAGTAGAGGCAGAGAGGCACCTTCTCTCTCTCGGGTATGAAAGAAGAGGACAGGATGATCATTTGCAGGGCAAAAACGCATAACAACCTTATACCCTTTTCCCCTCTTTGGGATAGGCAGGTGCAAATTTCCTCTTCATCTACTACTAAGAACTAATGGGCTATATAACCTGTGTGTGAATACATTCAATTATTTACATTGCTTTTAGAGCTATATGTAAAATTAATATATTTTGACCCACTGTacattaaagtaactgtccagtgaaaatctcactaaGTTCATACTCTATTTAACTTtgacccaaataatgttgttgactcatcctatactcgtatttgtggccaaagcataaattgtaattttaattttttaatcCAACACAAACTGAACTCAAACAGGCTGTTTAAAAAAAGCTAGCTATTTACtcatagaggatgatgtcatcctgaGGATGAGCTGGTCAATCAGCGCTTTACTCGCAttaatattttttaaacataattacctatttttttctttttttttggaagggaggaaggaactATTTCACTCCTATTGTAATTAGTTCTAGGTCATATTTAATATAAATCTGggaacactggacagttactttaaatgaGATTGCAGTGTTGGTAATAAAGGTGATGGGAAAACAGAAATACTGTTCTATTAGATATGGCACACAAATATGGCTTGTTGCAACATCTGCTAAAAACAAAGGTATTTTTGGAGTGGGCATCAATAACAGTTGTTCAAGTTACTTGAGTGTGAGGTGTGTGTTGAACTGGAAGAATGCTGTGTCTGACATTCACATACTGTTTTTGAATGTTGATTAAATCTTAAAGTATGTAAATATAGAAATTGAATGAATTACGGTGAATTTTGTGTTGAACTGGAATAAATGATTCTAACCGATTGTCTCCCAAATTCTGAATGCAATATAAGTTGTATTCTTTGGACAAAGAAAATGTAGAACAGATAGTCTGAGGATATTAAAATTGAGTGGTTGTTAACCCAAGGGACATTGTTCATCTTGGTATAGCATTAAAATAACAGTCTTCTGAAATCCACAAGTGCCCTGTGCCCCAACCTGGTCTGAGTACttttctgtatgtaaatccgagaaACTCCATTTTACCAAGTTatgtttcatatggtatgtattaatctgtggatgtccatcacccatttcatgacatgttacgaatttgctaaacgtatgatatgttatgaaatctagctaggtggctaacattagctaggcctggggttaaggtgagggttagaTAACATGCTAAGAAGTtgtaaagttgctaattagctaaaattctAAAGTtatccgtgatgagattcgaaatCGCACCCATCCACcacgaccaaccaccctactttcaaTTATGCCTTAAGTAATCATCTGTATTACGTAACTATACCATACTAAACGTATCATATTATTTTCAGGGGTGCGGATTTACATTCGATATGTTACAtatagtctatgagaccaggctgtgtgCTCAGACACTATGTTTGACAGAGTGGTCTACTTTCAAAGATCCTTAACTTGCTTCTCTTGAGTTTGAAGTGTTACTAAAGGTGTCTGCGCATTGCTGTGGTTCAAATTTGGTTGTATATTTGGACATTCTTTAACCATTTTAACTTGCCatttacaaaaacaaaatgtGTTAGTGGGTAGGTGTGTTGTTAGGACCTCTCTTTTGAAATCATTGTGTTTGAGAAGTCCCATTTTTATGTATTTAAATCAAATGTCTACAGTACACCAATATTAATTTGCTGTTCTTATCTTTGCACTTTTGTGAAAAATGACATACATTCTCAAATATTTTTGAAAGTATCTTGCTGATGCTTACTCTGCAGAAGACAGTTCTGTCAATGTAAGAAGCtgtatttctttttttaaatgtattttggagTAATATGTCCTTTTGATAAAGCTGACTTTATCCCTTTTGATAAAGCTGACAACCCCAATTTTGTTTTGCTGTGCTTTTCACATTTCTCAATTAAATTATACTCTTTGTAAAGACTTAACTGTTTGAAATGATCTATGAACACGTCATATTGTTACTTTTCACATCAGTTTTTAAAAGAACTGAATGGTTTGACATATCATTATCTGAGGATGGAAGGTTGCTGACTCATGCAAGTGTTCTGTTTTCTTGAGGGGAATGTGATTAATTTATTGTTATCTCAGAACTGCTCTGTACAAAACAGTTAATCTGCTAATATTGTGGAATATAAAATTACTTGCTTGATGTGTT

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016202 lncRNA downstream 26194 44285108 ~ 44285959 (-) True G893280
TU1016196 lncRNA downstream 41706 44270231 ~ 44270447 (-) True G893275
TU1016178 lncRNA downstream 53260 44256789 ~ 44258893 (-) True LOC110533992
TU1016190 lncRNA downstream 69609 44242268 ~ 44242544 (-) True G893269
TU1016186 lncRNA downstream 73334 44228962 ~ 44238819 (-) True G893265
TU1016209 lncRNA upstream 711 44320270 ~ 44323970 (-) True G893287
TU1016174 lncRNA upstream 28231 44347790 ~ 44349638 (-) True G893253
TU1016251 lncRNA upstream 72516 44392075 ~ 44392427 (-) True G893325
TU1016319 lncRNA upstream 163715 44483274 ~ 44483554 (-) True G893391
TU1016322 lncRNA upstream 167461 44487020 ~ 44487986 (-) True G893394
XM_021618617.2 mRNA downstream 3175 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 10497 44294538 ~ 44301656 (-) False LOC110533996
XM_036990394.1 mRNA downstream 10497 44295160 ~ 44301656 (-) True LOC110533996
XM_021618616.2 mRNA downstream 17908 44288348 ~ 44294245 (-) True tm7sf2
XR_002475075.2 mRNA downstream 53240 44252662 ~ 44258913 (-) False LOC110533992
XM_036990398.1 mRNA upstream 191930 44511489 ~ 44513298 (-) True LOC110534010
XM_036990408.1 mRNA upstream 306363 44625922 ~ 44634804 (-) False LOC110534015
XM_036990407.1 mRNA upstream 306363 44625922 ~ 44634807 (-) False LOC110534015
XM_021618636.2 mRNA upstream 306363 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA upstream 306363 44625922 ~ 44636337 (-) False LOC110534015
TU1016171 other downstream 3220 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 102889 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 601184 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 628233 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1064518 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 448891 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 691770 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1427756 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1427756 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1597720 45917279 ~ 45918339 (-) True G894917

Expression Profile