RNA id: XM_021618620.2


Basic Information

Item Value
RNA id XM_021618620.2
length 2213
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110534003
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44346114 ~ 44349641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTCCCCAAAGATTTTTTTCACAAACTATCTGGTTGTATTATTCCTTATTTACTTTTTGGATAACAAAACCACCTTTCTTCATCAAGAATTATCTTACTGTCTCTCCTTTGAGAAACACTCATCAGAATACTCCATCTCCAGTTCAGAATTCTACCTGTTCCGCTTGAAGTTTTTCCAGGCTTACTGTTCTTCACCTTTGACCCGATCCTTTCTCAAGGCCGCCTTTCTCAGATCGCTCCAGCAGTCTGTTGCTGCACTCTCCTTCTTCCCCTCAGATCCCTTCATCACCACATTCCTCATCCAATTCTCACAGTGACCCTCGGAGCCTCCGTGGGCTCCCACTAACACCATGGTGCTGATGAAGATGAAGTTCCCTTTTGAGAAGAGAATGAAGCTAGCCCAGGGGCTGTGGCTGCTCTCCTGGATGGCCACACTGGCCGGAGCGTTGACTTTCACCCTGGGCTGCTTCCTCAAGACCGAGCTCCGCAGGAGGGCAGAGGTAATGGACAACACAGAGATCCATGCTGTGCCCAACACTCTGATGATAGTGGGTCTGGCCTCTCTGGGTATCAACTACTTTGCTGGCCGTATGTGCCAGGATGCCCTGGATGCCGGACGCTTCCCCCGCTGGAAGACCTTCCTACAACCCTACTGGGGAGTCTCCCTCTTTTTCACACTCCTCATGCTGTCGACTGTGATCATGAGCTACGCTATGAAGGGGAATCTGGAGTGGTCCCTGAAGATCGGCCTGAAGAACGGCATCCGCTTCTACAAGGACACAGACACACCCGGCCGCTGCTTCCAGAAGCAGACCATTGACCGCCTGCAGATGGAGTTCCAGTGCTGTGGAAACACCGACTTCAAGGACTGGTTCGAGGTCCAGTGGATCAGCAACCGCTACCTAGACTTTAGCTCTAAGGAAGTGAAGGACCGTGTTAAGAGCAACGTGGACGGGCGTTACCTGTTTGATGGGGTCCCTTTCAGCTGCTGCAACCCCAGTTCCCCAAGACCCTGCATCCAGGACCGCCTCACCAACAACTCAGCCCACTACAACTACGAGCACCAGACCGAGGAGCTCAACATCTACATCCGCGGCTGCAGGGAGGCTCTGGTCAATTACTACATGGGCCTGATGAACACTATTGGTGCTGCGGTGCTGTCCATCTTCCTGGTCCAGTCATCAGTGTTGGTAAGTCTGCGGTACCTGCAGACAGCCATGGAGGCGGTGGCAGGGCAGGAGAACACTGAGATTGAGACCGAGGGCTACCTGCTGGAAAAAGGGGTGAAGGAGACGATCATGGAGTACGTGACTCCTGTGCTGGTTTTCCTTCAGCTGAACCAGGTGGGAAGTGAGGACGCTGAAGCTGGGGAGACCCCCGCCAAATAATGAGGAGAAATCTAAATGTTTCAAACCGGGTGGTGTTCAGGGCAAACATGGCACTTTATTGGGTGATAAATAATCTAACTAGACACTGATCAATTCATTTGGTATTTCTTTGATATCACAATCCATTCCAATGCTGATATGTTTTACCCCAAATGAGTGATTTGAATGTTGTAATCTATTTCAGTCACTTGAGGGCAAATATATTTTTGTATCAGTTGTCCCAGTCTGAGCTTTAGGTACccatggccacacacacacacacacacacattaaacacattaacgTCACCCCAAGCCCTCCATAATCCTTTCATGATTAATGAAGCTATTTGATGTTCAGTCAATTCCATGTACTCCCCAAAGGAGAAATAAAGAACACAATTGTTTTTTTTAGAACCGGGGATTGACATGTACTATTATTTCTACCGGTCCACAATCCACCTTGAAGGAAAATTTGGTTGTGGTTCATTAAAATATAATTAAATTGAGAAAGCTACAAAACCAGCTGTAACATGGTCATGACATGAATTAGTTGGATATGTTCAATTACTTCACAATGTCAGTGTTCAATAGTCAATACCACAATAATATCATGGTTGACACTTACAATGTAAAGATATTTCCAATTACTGAAGGATAGAGCTATGTCAAATTGATAAAgacacaaataaaaaaatagaatttTGAGGAATACTTGCAATGTAAAGCTGACTGTAGAACGATACACTGCTCAATGTTCTGCTACTTAACACTTAGCAAAATGACATACACAGCACTGTACTACAGAACTATTATGACAGGGAATCTATTAAAGTTGACCACTT

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014956 lncRNA upstream 41535 44301794 ~ 44304579 (+) False G892157
TU1014957 lncRNA upstream 41535 44301794 ~ 44304579 (+) True G892157
TU1014925 lncRNA upstream 75484 44270427 ~ 44270630 (+) True G892132
TU1014860 lncRNA upstream 92130 44253483 ~ 44253984 (+) True G892073
TU1014921 lncRNA upstream 98973 44246595 ~ 44247141 (+) True G892128
TU1014989 lncRNA downstream 48225 44397866 ~ 44398095 (+) True G892185
TU1015013 lncRNA downstream 137440 44487081 ~ 44487857 (+) True G892208
TU1015050 lncRNA downstream 140009 44489650 ~ 44489949 (+) True G892245
TU1014992 lncRNA downstream 252870 44602511 ~ 44603878 (+) False G892187
TU1014991 lncRNA downstream 253728 44603369 ~ 44603878 (+) True G892187
XM_036989352.1 mRNA upstream 5486 44330184 ~ 44340628 (+) True LOC118966633
XM_021618619.2 mRNA upstream 20428 44320239 ~ 44325686 (+) True LOC110534002
LOC110533999 mRNA upstream 57813 44287536 ~ 44288301 (+) True LOC110533999
XM_036990393.1 mRNA upstream 60574 44283818 ~ 44285540 (+) True mrpl49
XM_021618611.2 mRNA upstream 77137 44259513 ~ 44268977 (+) False LOC110533994
XM_021618621.2 mRNA downstream 1011 44350652 ~ 44377640 (+) False LOC110534004
XM_021618623.2 mRNA downstream 2388 44352029 ~ 44377640 (+) False LOC110534004
XM_036990395.1 mRNA downstream 2583 44352224 ~ 44377640 (+) True LOC110534004
XM_021618624.2 mRNA downstream 52134 44401775 ~ 44439475 (+) False LOC110534006
XM_021618625.2 mRNA downstream 52134 44401775 ~ 44439475 (+) True LOC110534006
TU1014803 other upstream 264704 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 265918 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 405557 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 602624 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 605084 43738585 ~ 43741030 (+) True LOC110533965
TU1014996 other downstream 305917 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 659193 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 1204596 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 1219811 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 1240718 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile