RNA id: XM_021618625.2


Basic Information

Item Value
RNA id XM_021618625.2
length 6484
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110534006
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44401775 ~ 44439475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGAGGTTTGTGCTACCTTGCGCTTTATTCATCTGCGTCTATGTGAAAGAAAACTAGAGACATGGATATGATTCACGACATTTTGCATGccttttcgtgtgtgtgtgtgtgtatgtgtgtgtgcgataGTCACATCTGTTTTCAGGCACAGAACATGGGCTTTGTCAAAAGCACTCTTCACTCTCCCTCGAAGGCATGCTGAGAAGTCACCTCTCTCCTTTGAGTCCCCCTCTCCTCGCGACAGCAGAGCCGCTTTTGCTTTCCTTCAGCACCACTTCCCatcctattctctctctgtcccctacaTCCCCGAAACGCTTACCAGCGAGCGTCAGCGCAGAGAGATGACGAGCAATTTGGGGAAATAAATCACGTTTCAGCGCAATTTATTCCTTAGAAAAATAGAGGATGATGAGAACATAGAAGAAAATAACATAGGCAGTAAAGAAGCAAAAGGAGGAATCACAAATTATTATAACCTAACGCACAAGTTCGTCAGCGGTCCAGCTGTCGGCATATTTAATTTATTTCGGGTTAATTGCACATTTACTGTAGACTAGCTATGTCGCAGCGGGAGGATATTGAAAAAGGCAGAGGGGGGTAggctgctgagagagagggagatagcctTGGCAGCACATTATTATAATGATGCTGAGTGAGTGACTGATCCACGCATTCAAATTGCGCTGGCGACTTTAATTTGGAACTACAATTCAGCAAGGGCGATATTGTATTTTCGTCTGCTTCTGGAAGGCATCGGGAGGAACCTGCAAATTGCCCGAACAATGCTCCAAGTGGCGCCTTTTATCAGGCTCGGAAGAAAGAAAACGGAGCAAAGGACGACTGCTATAGAGGGCTGAAGGAGCTGGCCTGATTTGAGCTCTTCATTAGGATTCAAGCAGCTAAGACGTTGAGACCGAGAGGAAGGGAAGTTGAGACCGAGAGGAAGGGAAGTCGATTATCAGCACCATGGCGCCGGAGGGAGTGGCCGAGCTGCGCGATTGGCTGTTCCTGCTGATGCTCTGCCTGACTCTGTTGGCCGAGGTGCTGGAGGTTGCTGCAGCCACAGGGTACGATGAGGAGGAAGACTTGGTGTGCCCCTCTGTCTGCCGATGTGATGAGGACTTCATCTACTGCAACGACCGTGGCCTGAGCTCTATcccccctctgcccccctctGCCACTGTGCTCTACCTTCAGAACAACCACATAGACAACGCCGGGCTCCCCACCTCCCTGGAGCGACACCTAACGGTCCGAGTGGTCTACCTGTACGATAACGAGCTGGATGACTTCCCCATGCACCTGCCCCCTTCCCTCCGGGAGCTGCACCTGCAGGACAACAACATCCGTACGCTTCCCCGCTCCACCCTGGCCCGCATGCCTCTACTGGAGAAGCTGCACCTGGACGACAACTCTGTCTCCACCGTCAGCATCGAAGACAAGGCCTTCGTTGACAACCCGCGGCTGCGTCTGCTCTTCCTGTCTCGTAACCACCTGTCCAGCATCCCCTCTGGGCTCCCGGCCTCTCTGGAGGAGCTGAGGCTGGACGACAACCGCATCTCCACCATCCCCACCCACGCCTTCCGCGGCCTCTCCTCCCTGCGACGCCTCGTCCTGGACGGAAACCTCCTGGCCAATCAGCGCATCGCAGACGACACCTTCTCCCGCCtctccaatttgacagagctttcGCTGGTGCGTAACTCCCTCCTGACACCGCCACTCAACCTGCCCAGCGCCCACTTGCAACGTCTCTCCCTGCAGGACAATGCTCTGATCCACATGCCCCGTGGCTCCTTGGACGGCATGAGGAGGCTCCAAAGACTAGACCTGTCTGGCAACAACCTGACCACCCTGCCTCGGGGCCTGTTCAAAGACCTGGACAGCCTGGGACAACTGCTGGTGCGGGGGAATCCCTGGCACTGTGGCTGTAACCTGCGCTGGCTACATGACTGGCTGCACGCTAGGGGTAACTCCATCACGGTGAGGGGCCTCACCTGCCAGGCGCCCGAAAAGGTTAGAGACATGACCCTCAAGGACCTGACCAGCCAGATGGAGGAGTGCGAAGTCACAGGGGTAGTGTCTGCCGGGGCCGGGGCTGGAGCCACAGGCAGTGGGACCAGAGACAGAGTGGGTGGAGTAGGAGGAGTTGCCGCTAGCTCCACCACCCTTTCCCCTCCACAGGGCTCCCTCTTCACCCTGCGCTCCAAGCGGCCCGGCCTGGGGCTACCAGACTCTGGTCTAGACTACACCCTGGGTAGCAGTGGAGTAGGTAAGAGCCTGGCCCTGAATGTCAAGCCCCTGGCCCACGACAGCATTCGTGTCACCTGGAGCGTGGCCCAGCCCACCTCCTCCTTCAGACTCAGCTGGCTGCGGCTGGGCACCAGTGCTGCCATGGGCTCCATCACAGAGACCCTGGTGAGAGGAGACCGCAGAGAGTACCTGCTCACCTCCCTGCAACCCCGCTCCAGCTACATCATCTGCATGGTGCCCCTGGCGGCCAGCTCCGGGGGTAAAGGAGCCATGGCAGGCGGAGACTCTGACTCAGATGAAGCTCCAGTGTGCGCTAAAGCTGAGACGTCAGACCCCAGTCAGCCAGATGTGGGCCAGGAGGACAACCAGGACTCGGAACACATGGCTACTCTGCCTCTGGCTGGGATCATTGGAGGAGCTACTGTCATCGTTTCTCTGGCCCTCATATTCGCCATCTTCTGCTGGTACGGGCATCGGGCCGGACGCCTGTCTTCTCGTGATCAATACAGCCGTGGCAGCTCCAGGAAGAGCAAGCACTACGATGACTACATTGAGTCAGGCACAAAGAAGGACACCACCATCCTGGAGATCCGAGGCCCAGGGTTCCAGATGACGCCCATGGTTACCCACCAGCCGCCCAAGCCCCTCCGGGaggattacatcatccacactaTATTCCCCTCCAATGGCACCGGCCTCTACAAAGGTGCCCACCAAGTGTCCAATGCAGGGTATGGCACCAACCGTGGCTATAGAGAAAGAGGGATCCCAGATATAGACTACTGTTACACGTGATCGACCTGGCCCGTTCCACACTGTTCTAGATGTACTGTATGGATACTGTATTTTGTCCGCATGGGTTCTTCTGAAGAGCCACTTCGTGCCTTCCTCTTCTAGTCTCCCATTCCAACTAAGCCAGCGGTTCACTGCACTGACACTATTTGAATAATTGGCTGGGGGGCCTGCAGGAAACAGCTAGCTGGTACACAAGCAGCAGGAGCGAACGAACGGCCCATTACAGGTGTTCATACGGACTGCTTCTTCACACACTTAGTAATGATCAGTGGATGTTTTCCTTCACTGCTCCCTCTCTCAGTGAGACAAGTGAGAAGAATGTGCCCTCTGTGTTGAGACTGCAGGATATTGTCACTTACAGATCAGTTCCATTCCAGGTCTTACGTTTGGCAAGCCACACCAAGATGGAAGGTTCAAAAGTCCTGAAAGGGTCAGAGAGACAAACTTCTTAGATACGCATCACTTGCCCACTGGCCATATTTTGCCCTCTTGTCTCGTCCGTTTAAAATGCCTCAACTATCCTGTGGTGCCCAGTGTGTCCTATCAGTTACCTGAAGACAGGGCTCTGTAAAAGCTGTGAATAGTTCTCTTTCAAACAGCCCACATAACCGCTTGTCTTAAAGCAGACTAGTTGTGGCCTGGTCCAGTGGTTCCACCGGGTGAGGGTTGTGTCAGGGGTGAGGGTCTTGTCAGGGGTGAGGGTCCTTGATGATATCCTTGATGACTTTCGCAAGTTAACGGAACAATGCATTGAGTTCAATTGCAGCCCAGGCTTGTAGACACTTTACTTAGATAGACATCCACTGGACTGTGTTTGGAGAAGTCATTGTTCCCTGCGTGTTTCTTTGATCAGTCCCTCATTGCTACCCTTATTtattggttggggggggggggggggactcacaCTGGACCTGGACTTTTGTGATTGGGAAGTTActccttctttcttttttttgaaCAAGAAGAAGATACAAAACAACTCTTGAGGTCCAACTGATGGTTAAAATTTTCTTGACTGCACCAGCTTGAATGTTTATGTACACCTTTTTAATGAAACTATCTGCAGCAAAAGAGACATTGTCCGATTACAGTGCAGAAGTTGGTTAATAAGAGCCCCCCCGAGACTGACAAATCACTCCTTTGAGACATAAGAGTCCAACCTCCATTCTCCCTCTTGTGCCTGTGTACTTATCCGGTTACCTTAGAAGGTGGTGGTATTCGGGTGAGAAGGGGAGCCTCCCTCACTAGATGGCATTCTGTGTTGTTCCCCAGTGGGCCCGATTCCCAACAGGACAGAGGACTTCTGTGGAGCATCCTGTGGACAGACACAGCATTCATGTAAACGGGAATCGGGAAAATGAGTGTGTAAACAGCGAGATATATCAGGTAGATGATCAAAACCGTAACACTGTGGACCTGCACTgtgggagggggtgagggaggtggaggaTCTGAGGTGGGGGTGAGACGAACAGTGGGGTGAGTTCTATTTTACTTTGTGTAGGCACTAGTGATAGTCCTCAACTCAGTCCACTTCTCCTTCCAAGTAGCACTACAAATGTAAATGAATCAGCACTTACAGCAACgtaacagggagggaggagggcagagaaATAGACCttgagagacacagaggaaaGGCGAGAGACAGATTCAGATGCAGAAGACGGCACAGAAATGATGCCTCTGGAACGACGGGGTTCATCCGTGCATAAACCTATTTGTCATAGCCTGCTACTCCACATTGCTGTAATATTTTCCATTGCTTGTTAATCACTTTACGGTTTCCAAGGTGGAAACGAATCGTGCTTCCTTGGCTGTTCTGTCTGATAGGATTTCATAGTAGGCCGACTGTCAGGCAATATGTCTGAGGAGTgttcattttattttaaatacaacATGTGAAACTGGAACAACCAACACTGTTGGTGGCAGGTTTATATTTTGGAaaatgttgatagaaattagaGCAATTTAATGTTATTCATTTTATGCTGTTAACATGACAATCACTCAGTTCCACTTTGAGATATCATCCACACCTGTCTCTACAGGAAAAACTAAAATACTGAgccttttaaaaaaaagtgtaCAATTTTTTTTGTGGTAGTGTCCCTGTTAAGTGTACACCTGCTTAGAGATCCATTCTTACAGAGGGGTCACAGTTAAAGTATAAATCGATCACATTACAGCAACAACGTCGCCATTTCACCTCATGCAAGAGTACAAAGAACTGTTAAAATATTGTTTTCCTGATCTGAAAGTAGCCACACATTGGGTTATTAGTGAGGGGAAGAATCATATCACAGCTTACATACAGAAAGCAGGCATATTTCACTGTTCATTCCCCGTCGCCTCTATTACTCCACCACTCTCCTATAAAACACATTGTATTTCTTTGGTGTGCAAGTATTGTTCCTAGTTGAGCTTGCATGCCTAGATGTGTATGTTTGGgcaaaattgagagagagagaaagtaccATTTCCATTTTAGCCGACACttttatacattttcatattggtcccctgtgggaatcaaacccacaaccatggtgttaccaactgagctacacagaaCCTTAGTAGGTATGCAGATTGTGTGCATCGCCGTAAGAGCAGGCAGCACTTGCGGTCATTTTGTTTAGTTATTTTGACCATCTGCATATTTTACTGCTCCTGCTGACTGGACCagcagttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagatcgtGTGGCTCCTGAAGAATCAGAGGAGCAGTTGTTCCACCTGCAGCCCATTAACACAGACGTCTCCTCACCTTGTTTGCCGAGTCGGTGTTTCTGTCAAGAGAATATACTTCTGCTGTCTGTGCTCAGACCGATGCGAACCGCACAATAACAGAGAGCGCAAACGGGGTCAGCTTGGGAGTTGTTACCCAGCACACTTTTTTTAAGCTTTCCGGGTGAAATGGTGCTCtcatcataatcatcattatCATCCTTTTATTGCACATTTAAATCCACATTCAGCGCGCCCTCTTCATGCCCCTTTCCCTTCGTGGAGTGCCCATCACCCAACCCACACAGGAGGTGGATAGCCTTTGGTATGCTGAGTGGATCCAGGTTTCAGGCGCCAACAAACACAAGGGTCCGTGGTTTGATGGTTTAAGAATCCGAGCAAGGAATTATTTGACTGTTATCAGTAGTGTGCTTTCTGTTCTTTTCTTTTGGTCTGCCCTTCCATATTTTCCCTGTGTACTTTTTGTAGGTTGCTGCTTTTGAAACATCCTCCTTTGTTGGACTCTGTGTTATACTGAGGAACAATGAACTATTTTGTATAAAGATGTCTCTTTTCTATGTGAGTAAAGGAGACATGCAAAGCC

Function

GO: NA

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1014989 lncRNA upstream 3680 44397866 ~ 44398095 (+) True G892185
TU1014956 lncRNA upstream 97196 44301794 ~ 44304579 (+) False G892157
TU1014957 lncRNA upstream 97196 44301794 ~ 44304579 (+) True G892157
TU1014925 lncRNA upstream 131145 44270427 ~ 44270630 (+) True G892132
TU1014860 lncRNA upstream 147791 44253483 ~ 44253984 (+) True G892073
TU1015013 lncRNA downstream 47606 44487081 ~ 44487857 (+) True G892208
TU1015050 lncRNA downstream 50175 44489650 ~ 44489949 (+) True G892245
TU1014992 lncRNA downstream 163036 44602511 ~ 44603878 (+) False G892187
TU1014991 lncRNA downstream 163894 44603369 ~ 44603878 (+) True G892187
TU1015086 lncRNA downstream 169462 44608937 ~ 44609138 (+) True G892279
XM_021618621.2 mRNA upstream 24135 44350652 ~ 44377640 (+) False LOC110534004
XM_021618623.2 mRNA upstream 24135 44352029 ~ 44377640 (+) False LOC110534004
XM_036990395.1 mRNA upstream 24135 44352224 ~ 44377640 (+) True LOC110534004
XM_021618620.2 mRNA upstream 52134 44346114 ~ 44349641 (+) True LOC110534003
XM_036989352.1 mRNA upstream 61147 44330184 ~ 44340628 (+) True LOC118966633
XM_021618627.2 mRNA downstream 9649 44449124 ~ 44465380 (+) True LOC110534007
XM_036990397.1 mRNA downstream 28130 44467605 ~ 44477275 (+) True LOC110534009
LOC110533118 mRNA downstream 37611 44477086 ~ 44479144 (+) True LOC110533118
XM_021618628.2 mRNA downstream 54683 44494158 ~ 44503554 (+) False LOC110534008
XM_021618629.2 mRNA downstream 54683 44494158 ~ 44503554 (+) True LOC110534008
TU1014803 other upstream 320365 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 321579 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 461218 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 658285 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 660745 43738585 ~ 43741030 (+) True LOC110533965
TU1014996 other downstream 216083 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 569359 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 1114762 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 1129977 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 1150884 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile