RNA id: XM_021618628.2


Basic Information

Item Value
RNA id XM_021618628.2
length 3368
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110534008
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44494158 ~ 44503554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACTTGCGCGCTTCTACATTGTACGTTCGCAGATGACCAAAATGGCGGATTCGTCGGTCGATGTTGTCGAGGGCTGTAGGCTCCCTGTTCTCCGAAAAAATCAGGAAAACGAAGATGAGTGGCCCTTGGCTGAAATTCTCAGTGTGAAAGAGATCCCTGGGAGAAAACTCTACTATGTCCACTATATTGACTTCAACAAGCGTCTGGATGAGTGGGTTACGCCGGACAGGCTTGACATGAAGAAGCTCCAGTTCCCTAAGAAGGAAGCTAAAACGCCCACTAAGAACGGGCTTCCGGGGTCGCGGCCCAGCTCCCCGGAGAGCGAAGTGGTAAGAGTGGCCGGAGCTGGCCCCCAACATACCCCCAGCAGGCCCCCACAGCCGCAAGCCCAGCAGAAGTCTATACCCACCAAAACTTCTCTACCAGACTTTCAAGTGTTGCAACAACAAGCTCAGAGGAAGAGTCTAGACCTCAACCTTCAAACTGCCACAGCTCCTTCCAGAGGCAAAACTCTCCCCACGCCGAAGAGGAAAGCAGAGTCTGTGTCCCTGGCAACACAAGTGTCCCCGGCAACCCCCGTGCCATCCTTGCCAGGTTTGGCTGAAGCCTCCCAGGCATCTGTTTACCCTGCTGTAAGGGACACCAACACCTTCAACCTCAAATCCAACGCCCGCGATGACCATGAGCAGCTTACCTCTCTCACTACGAATGGTACTGCCCGTCGCCCCATGCCCAATCAGCCAGGCAGGAAGAGGAAGCAGCCTCCCAACTGCGGGGGAACCGATGAGATAATAAAGGTTTTCCAGTATAACAACAGCCCTCGATGTGCCAATGTCTATCTGCAGCCAGGAGAGGACTCGCAGGACAGCTCTGATGGCATCCCCTCCACCCCTCGCATGACTGGCAGTCTGGTGTCGGACCGTAGCCATGACGACATTGTCACGCGTATGAAGAACATTGACTGCATTGAACTGGGCCGCCACAGGCTGAAGCCCTGGTACTTCTCGCCCTACCCACAGGAACTGACCACATTGCCTATTCTCTACCTCTGTGAGTTCTGCTTGAAGTACCTCAAGAGCCTCAAGTGTCTGCAGAGGCATCTGACCAAGTGTAATCTTCGGCATCCACCTGGCAATGAGATCTACCGCAAGGGCACCATCTCCTTTTTTGAAATAGATGGCAGAAAAAACAAAACATACTCTCAGAACCTGTGTTTACTGGCCAAGTGTTTCCTGGACCACAAGACGCTGTACTATGACACAGACCCCTTCCTCTTCTACGTCATGACAGAGTACGACTCCAAGGGCTTCCACATAGTGGGCTACTTCTCCAAGGAGAAAGAGTCAACGGAAGATTACAACGTGGCCTGTATCCTCACCTTACCTCCCTACCAGCGGAGAGGCTACGGCAAATTGCTCATTGAGTTCAGTTATGAGCTGTCTAAGGTAGAGGGGAAGACGGGCACACCAGagaagcctctgtctgacctgggGCTGCTCTCCTACCGCTCCTACTGGTCCCAGACCATCCTGGAGATACTCATGGACCTCAAGCCTGACAACGGGGAGCGGCCGCAGATCACCATCAATGACATCAGCGAGATCACCAGTGTGAAGAAAGAGGATGTCATATCTACACTTCAGTACCTTAACCTAATTAACTACTATAAGGGCCAGTATATCCTGACTCTTTCGGAGGACATAGTGGAGGGGCATGAGAGGGCAATGCAGAAGCGTCACCTGCGCATTGACTCCAAATGCCTTCACTTCACCCCCAAGGACTGGAGCAAGAGGGGCAAGTGGTAGGACCCTATCTGGTTCTcctggtctctctttctctcttaccgCATACTTTCCTGAAGCACTCCGGGTGAAGAGCACCACGCAGGTCTCCCCAGAGAGGATCAAAGATTTAAAAATGAACAAGAACTGTGTTTATATACAGCATCATTTTTTTGAATCATGTCCATCCTCCTATTGCCCTCACCAGATTCTCTGTCATTAGCAACAGTAGATCCATTTGCTTAGTCTCAGTAGTAGGATTTGTCATCTATTAATGTTGGATAGATGACTCCTACCGTCTGTTTCTTTGCCTTCCTGGCATTTGTTTTACTCCGCTTTCAACACTCTTGGACTAGTCAGTAATTAGTTAGTTATTTTTCACCTACATAAGCACATAATACTATTATTGTTTTGGATGTGATCTTGAATAATGACTGCACATATCCACAGTCTCATTGATCCTAAGCACTATGAGAATTACAGATCTAACCCCTAACTGCTTGTGACCAGTAGTAATTGTATATACTGtgatatactgttttataaaggATTTTTAAGGTGTGATGCATTTCTGTATGTTAAAAGAGATGTGCGGGGATGCTCAGTACAGAAAATAAGCCATGTTGAACTCTTACAAGAATGTATATTTGGATACCTCTACAGTTGtttgtcctttaaaaaaaatggaatgtaAACTAACACGTTTGGCACAATAGCGTGTCATTTAATTTAATGAGACTATTTactgtacatttgtgtgtgttcatttgtAACAAGTGATTCATACTTTGTTATTGTGGTCAATGGTTAGACAGCTATTCTATTTCCCTTCATATTTAAGTGTAAATTCTACATGGAGTCATCTTCTCTTTGTAAGTGGTTTAGAGTTAAGGAATGGGTGAATCAAATTGTTGAATTAGATGTTTGGCTATATATTGAAAAAGACTATAAATCTGACCAACAGATGGGATTTGATATAAGAGCCTTACAGAGAGATGGCTTTACACATCTAATAAACCAGGACACTTTTACTGTGTTTCATGGCTTTAATGAGTTCTCAAATGATAAAATCTGACTGAGTTGTCATCACTCACATGGAGAAATATGTTGTTTTTTAAAGTTTCGTCCATGTCATTCCCCTGAATGTCCTCATTTGACTGAAAAGGAAGTCAAAACAACATAGTTTAGGAACTGAATCAAAGATCTATTCCTGGGCTGTTTATACATTCTTAGGCAGCAGACACGTACATTTATATGGAAGTAAAATGTATCTAGTGTGCTCTGCTGTCTTTGTATACAAAGAAAAGAAGCTTAGTCTCTTACCTCTTTCCATACTTGTCACTTTAGGTAAATTTGAGTTACTCAATTTCATAGAATGAACTCCTCTCGTCTGTGGTTTACTGGAGCTTTACAGGCAGGTAACGTGAAGGGGAGTCAGTTCGGTCTTATGCCTATTGGTTGCATTTAGCCTCGTCCACGTGCTATGTGGGAGCCTTTTGAAATTGTAGGACCGACCTAACTTCTTCATTGACTGCATGTCGTCCTCATATAAGCTcagaaaaaaaataaacgtcctctcactgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015050 lncRNA upstream 4209 44489650 ~ 44489949 (+) True G892245
TU1015013 lncRNA upstream 6301 44487081 ~ 44487857 (+) True G892208
TU1014989 lncRNA upstream 96063 44397866 ~ 44398095 (+) True G892185
TU1014956 lncRNA upstream 189579 44301794 ~ 44304579 (+) False G892157
TU1014957 lncRNA upstream 189579 44301794 ~ 44304579 (+) True G892157
TU1014992 lncRNA downstream 98957 44602511 ~ 44603878 (+) False G892187
TU1014991 lncRNA downstream 99815 44603369 ~ 44603878 (+) True G892187
TU1015086 lncRNA downstream 105383 44608937 ~ 44609138 (+) True G892279
TU1015088 lncRNA downstream 106504 44610058 ~ 44610311 (+) True G892281
TU1015090 lncRNA downstream 112571 44616125 ~ 44616340 (+) True G892283
LOC110533118 mRNA upstream 15014 44477086 ~ 44479144 (+) True LOC110533118
XM_036990397.1 mRNA upstream 16883 44467605 ~ 44477275 (+) True LOC110534009
XM_021618627.2 mRNA upstream 28778 44449124 ~ 44465380 (+) True LOC110534007
XM_021618624.2 mRNA upstream 54683 44401775 ~ 44439475 (+) False LOC110534006
XM_021618625.2 mRNA upstream 54683 44401775 ~ 44439475 (+) True LOC110534006
XM_036990399.1 mRNA downstream 23108 44526662 ~ 44573870 (+) False LOC110534011
XM_036990400.1 mRNA downstream 23108 44526662 ~ 44573870 (+) False LOC110534011
XM_036990402.1 mRNA downstream 23108 44526662 ~ 44573870 (+) False LOC110534011
XM_036990405.1 mRNA downstream 23109 44526663 ~ 44569370 (+) False LOC110534011
XM_036990404.1 mRNA downstream 23109 44526663 ~ 44573870 (+) False LOC110534011
TU1014803 other upstream 412748 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 413962 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 553601 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 750668 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 753128 43738585 ~ 43741030 (+) True LOC110533965
TU1014996 other downstream 152004 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 505280 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 1050683 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 1065898 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 1086805 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile