RNA id: XM_036990401.1


Basic Information

Item Value
RNA id XM_036990401.1
length 8798
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110534011
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44526662 ~ 44573870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTGCAAATCATCTCGAGACAGGAGATGCATGAGAAATAGCGAGACAGGAAGCAGCCTTTAGAATGTAGAAGAATCTAATATTTGTATTAAAGAGAAACTGGTTTCCGATATCGTATGATTGACGTCAATTTGACCAGAGAGAAGGGAACAAAGAATGGGGATGCCAGGAACCGAGGAAATTCATTTGAAAACAACCTATTTTCGCCTGTGACCAGTGGAAGAGACCAAAGAGAATGGATGACAGAGTATAAAGAGCTGGGCTCTTCTCAtggttaactctcctctcctctgtacatTTTTACCAGCAGGACCAAACCAAAACTGGACCAAACCAAAACAGGACCAAACCAAAACTGGACCAAACCAAAACTGGACCAAACCAAAACTGGGGCACACCAGAATCGTAGTCATCTGCAGAGCTGGCGAGCGTCCTAAAATAACTTGGAATGGGTGTACGCTTTCCAGACTTAAAACATATAATTGTATCTGACTGTGGGACATAACTGTCATCTAATAGTCCTCTGCATTTTGTTATTGAATGTGGATGAGGAACACGTGTAGTACCTTTACTCATCTGGTTTGGGAAAGTGAGGAGGGACAGTTGGAAGATTGGAGTCAGAGTCTGAGGCACCATGCAGTCTGACGACCTCTTCCTCCGCAAGTTCTGCCGGCAAAGGCCGCGACCCCCTCTGGCAACGGTCAACTTTGACTCTAAGCGGGACGGTGGGGTACGGGCGCGGGTGCTGGCAGGGGAGTGGCCCCCGAGGAGGGACGGGGAGGGGGCAGATGGGGATAGCCTTACTAACCCGAACCGTGTGAGTCTGAACCTGAGGTCCGTGGGCCGAGGACACATCATGCAGAGAAGCAACAGTGACGTGACTCTGGGTGACCTGGACTCTTCTGGTAAGGTGGGAGGGAAGGCCACACGGGCGGTGGGGGAGAAGGCAGGTGCCGGGGCTCAGGGGGACTCAGGGGTGGTGCTGCACAGGGAGTATGGCAGCCTCTCCtcactggagagacagacaggtctgtcAGGAACACAGGAGCTCAGTGCAGACGACCAGGGAGCTCTGAGCCCCAACGCCCTCCGCTTCAAAGACCCCTTCCTGTTGCTGGGTCTGCATGCAACACCCCCAGAACCAGACGGCTTCTTCAGGGCTCTTTCCGCCCCCACAGGAGAAACTCCAAAACCAGCCAAGCCCCCCAAGCCTGAGGGGCTGAGCAAGAAGGCCAAGCCTTCACCCCCACAGATCCCCCAACCAGGTCCTTATGACAACCTGGGAGGCGGAGCCTGGGTCAGGAACTTTGCCCACTATGATGTTCAGAGTATTCTGTTTGACCTCTTGGAAGCAGCCAGCAATCGGGACAGCATCGGCCGCAAAAAGAACATCACCTCAGGGGCATCGGCTGCCTCAACGATGCGCCCCCTCACCCAGGCCACACCCTCCTCCCCCTCGCAGGGTGGGGGTAGTGGTGGGGGGGCTGTGGAGGACCCTGACCAGTGTCTGCTGGACGAGGGAGATGGGAACGACAACGAGCTGCTGCTCAGCTGCCCCCACTTCCGAAACGAGATGGGGGGTGAGGAGCGGGCGGGCCTGGGGAATACACAGGGAAGAGGGTGCCTGTGGCTGAGCCTGAGGAACCCCAACGATGCAGTGTCAGTACTGGAGGAACCCAGAGAGAGCCACGTCCAACAGCAGGGCAAGAGCAACTACTTCATAGAACACGCAGACCTGGGAGCCCACTACTACCGCAAATACTTCTACATGAAAGATCATCAGAACTTTTTTGGTATAGATGACCGCCTGGGTCCAGTGGCCATCAGCTTCcgtagagaggagaaggaggggtccAGTGGAGCTCAGTATAACTACAGAATCATCTTCAGAACCACTGAGCTGAAGACTCTGCGAGGCTCCATCCTGGAGGAGTCCGTGCCGTCAGCGGCCCGCCACACCACCCCGCGCGGCCTGTCTCCCAAGAGGCTCCTGGAGTTCATCATCCCTGAGCTCAACCTCCACTGCTTGCGCCTGGCCTCCACCTCGCCCAAGGTCCGAGATACCCTGCTCAAGCTGGATGAACAGGGGctgaaCTTCCAGAGGAAGGTGGGGGTGATGTACTGCCGTGCAGGCCAGAGCTCTGAGGAGGACATGTACAACAACGAGAGCTCCGGGCCGGCTTTCGAGGAGTTCCTGGACCTGCTGGGGGAGCGAGTGAAGCTTAAAGGCTGGGAGAAGTACCGCGCTCAGCTGGACACCAAGACGGACTCCACGGGGATCCAGTCCCTCTACACGCGCTACCAGGACTATGAGGTCATGTTCCACGTGTCCACCATGCTGCCCTACACGGCCAACAACACACAACAGTTGCTGAGGAAGAGGCACATTGGGAATGACATAGTGACCATAGTGTTCCAGGAGCCAGGGGCTTTGCCCTTCACTCCTAAGGCCATTCGCTCCCATTTCCAACATGTCTTCATCATCATCCAGGTGGAAAAGTCCTGCTCTGACCACACCTACTACAGGGTGGCGGTAACACGCTCCAAAGACATCCCGTTATTCGGGCCTCTGTTCCCTAAGGGTGCTCGATTCCCCCGTTCCCCTGCCTTCAGAGACTTCCTGCTGGCCAAGGCGGTGAACGCTGAGAACGCTGCCGAGAAGGCAGAGAAGTTCCGCTCCATGGCCACGCGTACACGGCAGGAGTACCTGAAAGACCTGGCAGAGAACTACGTGACCACCACGCCAATCGACTCCTCCACCAAGTTCCCCCTGCTGTCCCTGGGGGGCAAGCGCAAAGACAAACTGAAGGGGGCCAAGGGGGCAGAGCTGCACAGTGCTGGGGCGCTAGTCTGGGCTGTCAGGGCCACCAGTGGGaatgaggaggagacaggaggacaaAAGCTGCCCTGTCTACTGGGGGTCTCAGCTGAATCAGTGGTGCTGATCGAGAGATACACACGGAGGGTGGTGTTCAACTGCTGCTGCCGCGACGTGATTGGCTGGAAGGCGGTGACAGACAGCAGGGCCATAGGTGGGCCTTGCCTGGATATCTTCTATGAGAGGGGGGAGGCAGTGTCAATCAGTGTGATGGACAGCCAGGCAGAGGAGATACGGGAGATGGTGCAGAGACTAGAGCTGGTGACGCGGGGCTGTGAGGCGCGGGAGGTGACCCCGCTGCGTGACGGGGTGGGCCAGCCAGGCTTCCTGATGAGCGAGGAGGGCTTTGTGACGGACCTGCAGCGATTCGGCTATGCGGAGAGTGGGGGTCTGCAGCTGGGGGCGCGGGTGGTGCGACTGTGTGGTCACGCCCTGGTGCACCTGGGGCCGGAGGAGAGGGCCAGACTGCTCCGCACTGCCCACAAGATCCACATCACCGTCATCCCTCCAGACGAGAACGGCAAGCCCCGCAgGAGTTTCTCCGAGTTGTACCAGAAAGCCATCCAGGATGCAGAACGTAAGCCTGGGGAGGGCCAGTCTGGAGAGGCCTGGGTACTggacgagagggaggaggaggaggagatggaggaagaggagcgtgaacagggagagggaaaggaggcgGAGACGATGGAGGGACCAGCTGAGGGAGGAGAGGCTGAGGACAGGCCGTCAGAGATGGGACAGGGTGAGGAGGACCAGGGGGACCAGGGCTCTCTTTTCTCCACACCCAGCCTGCCTATTTTACGGGCCACCTCCCTGCATGACCACCCCCCCAACCAGACCATGGAGGCGATCAGCCACTCCCAGCTAACACGCAGCTACTCCTTAGAGTACTCCCGGGACATATGTGACGGGCATGTTTATGACAACGTGGGTGTGAAGATGGAACGTCACATCTATGAGAACCCAGGGGAGCTGAGAGACGCCACGCCTGACCTCATCCTGGCTGTTAAACCCAAGGTGCCCCTGGACGAGGAGCagtttgtAGGGGCTGAGTTGGGTGAGGAGAGGACGTTAGCGAGGGACCCTTCCCTGTCCTCCGCCCGGTTGTCGTGtctggacagaacagagaggaacTCCCGAGCTTTGAGCCTACACAACTCCATCACCAAGATCCTGTCCGAGAACACAGATTCCTCAGAGGAGGAGTGGCAGTCGATAGCTGATCTAGCCGCCGCCTGTCGCGGCATCCTGGAGGCCTTGTCACAGGAAGATCGTAAAGCAGGAGATGGGACCCAAGGAGCAGACTCCCTGACAGATGGCAAGCTAAAGGACATGAAGGACAGCGACTCCCCTGGCCACATGGAGAAGGTTTCCCAGCTGGAGGACATGCTGAAGAGGCTGCAGGACGACCTGCAAAAGTCTTGTCCACTCAATGCAGCCACCCCTCACCCACCTCCACCCATACCCAgccccctctcacccctccatccatcccagcCATGGTGGTCTGACAGACGGGTGTTGTTGTGTGCCGCTCCCTGGCAGGAGAAGGAGGACAAGGCGGTGCTGCAGGCCGAGGTGCAGAGCCTCAGGCAGAATAACCAGCGGCTGCAGGAGGAATCCCAGAGCACCGTGTCCCGCCTCATCAAAGTCACCGAGCTGCTGTGCAATGTCAACAAGCCCTGTTAGCTCCACCACAGTACacactgtgtacacacacacacacacacacacacacacagatcacacacaaacaaacacacacagatgatcGCACACAGATCACAAACACACTGCGCATTCAATATTGTATAAAAACACACCAGCACAGTACATCAACCTGCTCTACACCACACATGCATAATACTCCGCATTCTGTCGGATGACATTTTACCTCTGGGCAAGCCCATGAGGGCAGAGTCAACTCAAAAAACAACTCTGAAACATTTCTCACCATCTGATAGTCCTCCCAATAGATTGACTAATGGTTGTGCTTTACCCAAGAGTGTGTTTTGTACCTTGAGTGTGcgcaagtgagtgtgtgtgtgtgtgtgtgtcgtcactATGGTTCTTTTATCTTGCTTCACATACTTGACAAGTTGGGCAGAATAGCAATTGCTTAAAACAACCCAGTTGATTTAGATGAAGAGGCACGTGTGCAGCATGTTTTCTGGctgtttatttcaattgacacaAAGCGTGTGTGTATGTCTCGTGAGGTACGTATGTAAACAGtagtctccctcccctctctgctcaACCCACGCCATGATATGCAGCGTCTCGGACCGAGAGCAGTTCAGCTGGGCACCCTTAGAGTGGAGGGCCTTGGAGCTACATATTACACAGGGAAAAGGGAACATGACAATTGCATGCCTGCAGGCAGCCTGCTGGAAAAGATGGAATGATGCATACTgaccctgcctctctctgccaaCATTCTCACGGAATGGTTCATTCATTGGGTAGAGACACCATTCTCTCCTCTTCATACCTCCTCAGCTTAATTTCAAGGGTGGTGGACTTGAGTATTCCACGTCTGCTTCCAGTGAATTCTGATTGAGTTGAAACAGATATTCAAGTGGATAATACCTCTGCTGAGGATGAAACAATGGGGGAGATCCTCGTCATCCCTGAAAGACTGGCTGTAGAAGCTATGCTGTAGAAAGTGCACCTCCTGCTGGACTGAACCATGTATTGTCATAAGGCAGCTCTCCTTTTAGACAAAACTATTGTAGGGATTTAATGTGAACTGGACAGGATTTATTTCGTGAACACAGCCTTCTGTGTTACaatatatgttgtgtttgatGGCCACAATGACAATTCAGTGTATTTGAAATGAATCCAGAATGGAGTGGTTACCTGTGGGTGAGGGATTCCCCCATTTCACCCTAATGTTTTTGTCTGTGtacctactgtatgtgtgtttctgtgttgttctTGCACTTTTAGCATCACCTATATCGGCATGGGACAGGGCACATATTTAACCTCCTGCCCAGGTTCATGCCTTGCTTGAAACATTTAAGTGGATTTGATCTCACCACTTCACCTCACCCCACCTCACCTTCAGGTCCACTGCTGATGACGCCAATAACAATGTGAGATCAGAGGAGAACGGGATTATTCCTCCTCCAAGACTGTTCTGCCAAAAGATGCCAAGGCAGCTCTCCTACACCCAACTCAAACCACTGGACCCAGCTGTGTTGTACAGCTCTGTAAGGGATGCCAAACAAAAAGCTCTTGTTTGTTGTATATACTATTTTACTTCCTCTTGTAATTTTATTTTAGAGTCACTGTGATTACCCGGTACCAGCAGATAATGATATattcaaattaaattataaaTCTAAACTTTATCTATATGTGAAGACAACATGTACAGCTGAACTGCTCAGTGCTACATAGTTCATTTGGTTGTGTATGCCCTCAATTGCAGGATTGTTTAATATGGAGACTAGTGTAAATGTGCCCAAACAGGCAGTTTGAGCCAGGCTGTTTAAAATGGTGATGCCTTGTTGTTGGAAATGATTAGCAGAGTGGAGAAGTGTAAGAATATCTGATGTTTTACTGTGTTCTTCTGTACAGTTCTGTAGATTGTAGGAAGTTGATGAAGCATGATAATGCACCAGGTCACTTCCTAGctcccctctctgtgtgtgtgtatgtatgtgaaaaaaagaaaaagaaaaaaaagaaagttatAACTTATTAATCTCGCAAATGTGGAATTCCCTGTTAGATGTGTCAATACAAGGGGAGGGAGGCAGCAATTAGATGTGCTATAAAGTTCAAATGGTATGGTAGGGGTTGGTTTTAAGGAAGAAtgtgtttttatatatacattcAAATACAAGAAGACAAGAGGTCAAATATTTCTGCAGTGTTATAGTATTTCTTGGGGAAACGATAATGGCTATCGTTATCATTCTAGTATTGAGCTATTCATTCAGAGCTCCTACGTTCACGTTCAATAAGGTCTCTAAATGCCACTAGGTACGCCTTAAAGAGTGACTCTGGGACTCtccagagaggacaggacagacaacATGGTCAGACTGGGTCATGTGAAGGCTTCTTTCTCAGACATTGTGCCTACCTGAAATTGTAATGTATGGTAACTCAGCTTGGTGTCTTCATTTCTGTTCTTCATGGTCATTGTTTTCAGACAGTGTCGGGTTGTCCTGTATCCTGCAGGATAGACAGGTGTGTCTGCCACATGACAGTGGTAGATGTAGGGTTGGTTGGTATGGGGTCTCTCCAGGGTCTGCTCGTCAATCCTCCCAGAGGATCTGTGGCCATTAAATCAAAAAGATGGGTTTAGGGACCCCAGGAAAGTGTCATAAAGGTTATATGAAGACGATATGAAGTGTGTTTGCTTTTGTTAGGTTAAAGGAAATGATCCGTATAGCGCTGGTTTAAGACCAGCATCTACAACCTTATTGAATCACAATCATTCGATGCATAAAAACATAACTTTCCACAATCATTTGGACATGAACCATCCAGTGCACTTTGAACCCCCATTTATGTATCACAAGAAGTATCCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCTTGTATGCCCGAGTGACCCCTAACAACACCTTGTATGCCCGAGTGACCCCTAACAACACCTTGTATGCCCGAGTGACCCCTAACAGCACCTTGTATGCCCGAGTGACCCCTAACAACACCTTGTATGCCCGAGTGACCCCTAACAACACCTTGTATCCCCGAGTGACCCCTAACAACACCTTGTGTGCCTGAGTGACCCCTAACAACACCGTGTATGCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCTTGAATGCCTGCGTGACTCCTAACAACACCTTGTATGCCTGAGTGACCACTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACTTGTATGCCTGAGTGACTCCTAACAACACCTTGTATCCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCGTGTATGCCTGAATGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCGTGTATGCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCCTAACAACACCTTGTATGCCTGAGTGACCCATAACAACACATTGCAGATGGTAACAATGCAGTAGTCCTTTCACTCACCTGCTCTAGGCTACATCAGCTGGCAAACGATCTCCACCCAGCCAATAGTAAATCTGTGAGAATGATCCCTGGTAGAGACATTGTGGTTGTTGCCTCCTCCCATCCATGTTGTAGGAGAGGAAACCAATGACCAGTTGTTTTTCTTTTATCCTCTTATTTGTTTGCCTTATATGTCATTGCATCATCCTTACAGGAACCCAACGCTCTCCGTACAGTGTGTGCCCTACTTCCACCTTGTCATCTCTTTGCTGCTGTTGTAGAAGGGGATGTTTTAATGTGGCCATACAGTAAGGAtgatagaatacagtacattattACCAGTGGAACCACACACAACATCACATCCCCAGTGTAGGTTTATGGGAGGCCTGGCCACACATCGTTCATGTCACAACGGTAGCACGCACTATGCACTCTGCTCAGCCAGTTAAAGAGCTGACGTTACCATAGCCAGGCAGTGGCACACTGAGGGAATGTGCTGTCACAAAACATGCTTTCAGTATGATGCCACCTTCACCTGTTGTGTCATCCACGAGAAGAGTAAATTGACTAAATGTTGTTCATGTACTGTGAACTGGAGGGCTCATGGCAATAAAGATTCCTCTGTACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015050 lncRNA upstream 55284 44489650 ~ 44489949 (+) True G892245
TU1015013 lncRNA upstream 57376 44487081 ~ 44487857 (+) True G892208
TU1014989 lncRNA upstream 147138 44397866 ~ 44398095 (+) True G892185
TU1014956 lncRNA upstream 240654 44301794 ~ 44304579 (+) False G892157
TU1014992 lncRNA downstream 28641 44602511 ~ 44603878 (+) False G892187
TU1014991 lncRNA downstream 29499 44603369 ~ 44603878 (+) True G892187
TU1015086 lncRNA downstream 35067 44608937 ~ 44609138 (+) True G892279
TU1015088 lncRNA downstream 36188 44610058 ~ 44610311 (+) True G892281
TU1015090 lncRNA downstream 42255 44616125 ~ 44616340 (+) True G892283
XM_021618628.2 mRNA upstream 41679 44494158 ~ 44503554 (+) False LOC110534008
XM_021618629.2 mRNA upstream 41679 44494158 ~ 44503554 (+) True LOC110534008
LOC110533118 mRNA upstream 66089 44477086 ~ 44479144 (+) True LOC110533118
XM_036990397.1 mRNA upstream 67958 44467605 ~ 44477275 (+) True LOC110534009
XM_021618627.2 mRNA upstream 79853 44449124 ~ 44465380 (+) True LOC110534007
XM_021618633.2 mRNA downstream 1061 44574931 ~ 44601953 (+) False LOC110534013
XM_021618634.2 mRNA downstream 1062 44574932 ~ 44601953 (+) True LOC110534013
XM_021618635.2 mRNA downstream 39974 44613844 ~ 44622676 (+) True LOC110534014
XM_021618642.2 mRNA downstream 191361 44765231 ~ 44767832 (+) True LOC110534018
XM_036990421.1 mRNA downstream 419416 44993286 ~ 45003089 (+) False LOC110534023
TU1014803 other upstream 463823 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 465037 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 604676 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 801743 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 804203 43738585 ~ 43741030 (+) True LOC110533965
TU1014996 other downstream 81688 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 434964 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 980367 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 995582 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 1016489 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile