RNA id: XM_021618635.2


Basic Information

Item Value
RNA id XM_021618635.2
length 3803
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110534014
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44613844 ~ 44622676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTCTGTCCTCCTATTGCGTTTTTCTCTTCGAAGAACACACCATGTCGCACCTTATGACCAAGCCATATGAGGAGCAATAATTAATGTGCATAATAAATTAAACTACACGCACGAACAGCGGACACTGTAGTAAGTTTGAACAAAAGAGACACCAGCGGCGAAGTTTCTCTCATTGGATGGACCATGACGAGTAACTATTTTTCTTACTGTAACTTTACGACTTCAGCTACATGAATGGACCATCGCATTGACTTTTCATTGCCACGAGAATGTGCCGTTAAGGATGGGGGAACCTGTTGTTTTACTGTGGGCATATGGACAGCATCCAAGACAATTTGTTGGCCCTGAGACGGTAACTCCATGCCAGATGTCAACATCAGCGATTCCCTGTTGTGAAGAAGAATGACTTTTGCTCCACAGCTTAACTCTGCGTCGCTCTGTGGAAGATGAACCACTCCTGTCTCTCCCAGACCAGTGACACCACCAATGTGACAGCAGATCCACTGGGGGGCCATGAGATATGggaggtggtggtgattgtaCTCATCACAGGGCCTCTCTCCCTGGTCACTATCATAGGTAACCTGCTGGTGGTGATCTCCTTCCGGGTCAACAGGCAGCTGCGCACCTTCAGCAATTACTTTCTGCTGAGCTTGGCGGTGGCGGATCTGATCCTGGGAGCAGTCTCTATGAACCTCTATGCTGTTTATATTATCATGGGACGCTGGACCCTGGGCAGCCTGGCCTGTGACGTCTGGCTGGCTGTGGATTATGTGGCCAGCAACGCCTCCGTCATGAACCTGCTGGTCATCAGCTTCGACCGCTTCTACTCCATCACCAGACCTCTCACCTACCGGGCCAAGCGCACCACACGCCGGGCAGCCGCAGCCATCGGCCTGGCCTGGGCCGTGTCCTTCATCCTGTGGGGGCCAGCCATCCTGTTCTGGCCCCATGTAGTGGGTAGGGAAGCACAGGACGCGGGTGAATGCTCTATCCCGTTCCTGACCGAGCCTGCTCTCACATTCGGCACGGCCATCGCTGCCTTCTACCTTCCTGTCACCATCATGGGAATCCTGTACTGGAAGATCTACTGGGAGATTGAGAAGCGAGCCCAGGGTCTGGAGGGGCTAATGGGGTCTGGGAGCagtggaggggcctcccaggtgTCTGGGCGAAGGGATGTTTACTCCAGCAGCACCAAGAGCAGTGTGAGCAGCTCCAGAGAGGTGCCTGTGGGCAGGGAGCAGAGCAGTGAGGTGTCCCAGGGCTGCTTCCCTGTGAGAGAGGAGCCTAAACAGAGCAGTGAGAGGAGAATAGCAACACTGTCATTGTCTCCCACCAAGGGGGCCTACAGGGAGGGCTGCAGAGACAGCACCTGTAACATAGATGAGGAAGAGCCtactgtctccctttcctcctcagAGGAAGAACCAGAGCAGACGCAGCAGGGGGCGAGCGCTAAGACAAGCCCTAAAGCCATGATCCCACTCAGAGACGCCCAGGGCAGAGACACCGTAGGGGCCATCAAACCCCTGACATCCAGGGCAGAGGACAGTACAGCAGGTCCACAGGGCAGGCAGCCCCCCCTAAGGGGCTCCACATCAGACTCCAGACGCCACAAGCAGCCCAAAGccaagaggaggaggaacacaATTGTCAGGGAGAAGAAGGCAGCCAGAACCCTGTGTGCCATCCTGCTGGCTTTCATCCTGACCTGGACGCCGTACAACATCATGGTGCTGGTGTCCGTCTCCTACTGCGTGCCCGAGAAGCTGTGGCAGCTTGGCTACTGGCTCTGCTACATCAACAGCACCGTCAACCCAGTCTGCTACGCCCTCTGCAACGAGCACTTCAGAGTCACCTTTAAGACGCTGCTGCTCTGCAGGCCGGGACAGAGGAACTGGGGAATGGCTTATAACGCCAACCATGCCTCCTTCAGGACACACAAGACCAGCAGTACTGTCTGAACTTCTTCAAAGCTAGACACTACCCTCTAGCTTAAGAAGAGTCAGACCTGCCCTAGTAAAAGACAATCCATGCAAGGGGATGATTTTTTGAAGAAGGCAGAGGAATTGCTTTTTGACTGTTCGGTAAGAAGGAAAAAGAAACAGACATGCTAAATATGATGGGCATTGGCATGCATAACAGTCAATAGCAGAAAACCTATTGCCTCAAAGTAGTCTTTCTTAAGAACATTAGATTGTATATATCTATGATAATCATGCAGTCTGTTTCTGCCCATGACCGTCTTCAAACCTTCCTTCCTCACCCTCCCCTTCAGTTCCTCTCCATGGAGCTGTTGGTCTGCCCGTTTTGACTTCGGGCCAGAGCCATGAAATGGCTTCTGTTTATGACATGTTTATTGAAACAGGGTTATGAATTGGTCCATATGCCTTAATGTTAAATCATCACCAGGAACTTGCAATACAAAAAAGGTACAAATATAACAGACACAAAGATTCCATCACTGATACTATAGTGCTTCAGTGATACTGAATGCACACTGCTGCAATAGAGAAAAGAGGACACGGCACCAAATACAGCCAGTgacaaatattttattttcatggggggaaaaaaaagataAAACCTTCTACCATAAAGGCAATATTCATTCACAACTCAAATAAAGTCCCAAAACTGTTCTACATCAACTGAATCAATTTCATTGCTGAATATGACGGCAAAACGAAAACCGTTCCGTTCCTGGAAACCGCCTCTAAACAAACACCCCAAAAAGTGTCATGAGAAATACTTGTTTAACGCTTTAGTATTTGTTAGTTGGCTATTGATATAACATGATAGTATAGCTAAATTATATTACACAACTTCCTTACACTTTGATCAATTCAAATCGGAGCATACCATTAGCACACATTATCATGCACTTGCTTGCCTGTTTTGCCTTTTTTTTTATACCATGTCTGCCAATGTATCCTGTGTTTTTTACTGTCACTAGTTAAGGTAAAAACATCTTCGCTAATTGTAAATAGTGTAATTTGTGTGCCAGACCTGTGGAGAGCATTGTGCCCAGCTTTgggggagaagagcagagagaaaaTACAATGTTCCCTTTCCATGAGACAAACAACTCAGACATGCAATTGATTCAGAAATGTGCCTTTAAGGTTCACCTTAGAATCCCTTTGTGCCCATCTTACAAATTATATAAATGTAGACCTATATATGACAATGTCAATACATTTTCCTCTAAGGAAAATGCTACAGTATAGCAAATGCAAGTGCACATACCAGTCTGTAGTTTGTGTTAACACACAACTGTCTGACTAGATCCTCTGATGGCTCCCCATCATTCCAATAACATTATCCCCCTGACAGTCCCAGTAGCACTTGTATTGCTCATTACTGCCCTCCTGTGGCTATAACTGAAGGGGAGTGTAGATCATGACAGTCACGTGAGGCCCCAGTGGAGCAGGTTAGAGCAGGGTGGGATGAGACTTCTGAGCCGGTATGGGAAGGGAAACAAAGTCCTGTGTTCAGTAGCCATTTCCCAACACATAACAAGGGGTCGGGTTCAGGACTAGTGCAGCTCTCTAGGACCTGTGTTGCCTACCAATGGAATATGTAACTATTGTTGGTAAAATGCTGACCGTaggtatacagtcgtggccaaaagttttgaaaattacacaaatattaattttcacaatgtctgctgcctcagtttgtataatggcaatttgcatatactccagaatgttatgaagagtgatcagatgaattgcaattaaatGCAAAGTCCCTCTTTTGCTAtgaaaatgaactgaatcccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015088 lncRNA upstream 3533 44610058 ~ 44610311 (+) True G892281
TU1015086 lncRNA upstream 4706 44608937 ~ 44609138 (+) True G892279
TU1014992 lncRNA upstream 9966 44602511 ~ 44603878 (+) False G892187
TU1014991 lncRNA upstream 9966 44603369 ~ 44603878 (+) True G892187
TU1015050 lncRNA upstream 123895 44489650 ~ 44489949 (+) True G892245
TU1015093 lncRNA downstream 6603 44629279 ~ 44630603 (+) True G892286
TU1015101 lncRNA downstream 15088 44637764 ~ 44639136 (+) False G892293
TU1015102 lncRNA downstream 15088 44637764 ~ 44639065 (+) True G892293
TU1015015 lncRNA downstream 39390 44662066 ~ 44662371 (+) True G892210
TU1015003 lncRNA downstream 41020 44663696 ~ 44663924 (+) True G892198
XM_021618633.2 mRNA upstream 11891 44574931 ~ 44601953 (+) False LOC110534013
XM_021618634.2 mRNA upstream 11891 44574932 ~ 44601953 (+) True LOC110534013
XM_036990404.1 mRNA upstream 39974 44526663 ~ 44573870 (+) False LOC110534011
XM_036990406.1 mRNA upstream 39974 44526663 ~ 44573870 (+) False LOC110534011
XM_036990403.1 mRNA upstream 39974 44527437 ~ 44573870 (+) False LOC110534011
XM_021618642.2 mRNA downstream 142555 44765231 ~ 44767832 (+) True LOC110534018
XM_036990421.1 mRNA downstream 370610 44993286 ~ 45003089 (+) False LOC110534023
XM_036990422.1 mRNA downstream 370631 44993307 ~ 45003084 (+) True LOC110534023
XM_036990423.1 mRNA downstream 418085 45040761 ~ 45123075 (+) False LOC110534027
XM_036990424.1 mRNA downstream 418086 45040762 ~ 45123075 (+) False LOC110534027
TU1014803 other upstream 532434 44077717 ~ 44081410 (+) True LOC110533983
TU1014802 other upstream 533648 44077717 ~ 44080196 (+) False LOC110533983
TU1014709 other upstream 673287 43938412 ~ 43940557 (+) True G891951
TU1014602 other upstream 870354 43742917 ~ 43743490 (+) True G891856
TU1014601 other upstream 872814 43738585 ~ 43741030 (+) True LOC110533965
TU1014996 other downstream 32882 44655558 ~ 44659491 (+) True G892191
TU1015341 other downstream 386158 45008834 ~ 45010849 (+) True G892499
TU1016991 other downstream 931561 45554237 ~ 45568592 (+) False LOC110534033
TU1016992 other downstream 946776 45569452 ~ 45584634 (+) False LOC110534033
TU1016990 other downstream 967683 45590359 ~ 45592309 (+) True LOC110534033

Expression Profile