RNA id: XM_021618639.2


Basic Information

Item Value
RNA id XM_021618639.2
length 1767
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC110534015
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44625922 ~ 44636337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGACATGATTTAATCATGTTGCCTGAAATTGCATAGTGCCTAAAACCCATAACTGGCTATTGGACCCCCTCCCCCCCGCGCAGGCGCAAACTATCCACGGCAAAGCAAACCAAGATGGCGGCTGTTGTTGAGAATGTTGTCAAACTGCTCGGAGAGCAGTACTACAGAGATGCCATGGAGCAGTGCCATAACTACAACGCCCGGCTATGTGCCGAGAGGAGTGTCCGAATGCCCTTCCTGGACTCTCAGACTGGAGTGGCGCAGAGCAACTGTTACATTTGGATGGAGAAGAGACACAGGGGACCAGGCGTGGCCCCAGGACAGTTGTACACCTACCCATCCCGCAGGTGGAGGAAGAAACGACGATCCCACCCCCCAGAGGATCCCCGACTCGTCTTCCCTCCTCTAAAGTCAGAGCTGGACTtggggttaaagaaggattccCTGTCCTCTGATGGCAGCAGTCTGGAGGCCCTGCTGAAGGGAGAACCCCTGGACAAACGGGTTCCTCCGGAGCTCCGAGGGCCTGAGGAGGAGTCCAGTCTGACAGACTACACTGGTGGGGCGGTCACCCCTGCAGCACGCGTCAGAAAGAGAGTCCTGGAGCCAGATGACTTCCTGGATGACTTGGAGGATGAGGACTATGAGGAGGACACCCCAAAAAGaagagggaaaggaaagggaaagTGTCGTGGAGTAAGCAGTGCCAAGAAGAAGCTGGACGCTGCGGCGGCTGCGCTGGAGGACAAGGACAAGCCCTACTCCTGTGACATCTGTGGGAAGCGTTACAAGAATCGTCCGGGCCTGAGCTACCACTACACCCACTCCCACCtggctgaggaggagggagaggacaaggaggagccTGAGGTCCACACCCCCATTCCGCCCCAGCCTGAGGAGCCTAAGAcaCCCAAGAAAGGTCCAGATGGTTTGGCGATACCCAATAACTACTGTGACTTCTGCCTGGGAGACTCTGCCCTCAACCAGAAGACGGGCCAGTCAGAGGCACTGCAGTCCTGCTCAGACTGTGGACGTTCAGGCCACCCGTCCTGCCTGCAGTTCACCCCCGTGATGATGGCTGCAGTGAAGACCTACCGCTGGCAGTGCATCGAGTGCAAGTGCTGCAACATCTGTGGCACCTCAGAGAACGACGACCAGCTTCTCTTCTGTGATGACTGTGATAGAGGCTATCATATGTACTGTCTCAGCCCCCCTATGGCTGAACCTCCAGAAGGGAGCTGGAGCTGCCATCTGTGTCTGGACCTATTGAAAGACAAGGCGTCAATATACCAGACCCGTAATGTCCCTCCGTCGTGATGGACCCCCATCCTCACATACAACCCTCCCTCCACAGTGAGGTTCTTTCTCTGTGGTCAGTTGAGCGGCGGGGGTGGGACAGATGACTTGTGAAAAGGGAaacgtaccccccccccccccgctgaaACACGCTTAGGTTTGGTTGTTCTATGACTGTTACACAGTTCCAAGCTCAAGTGACCCATGTAGGCTTTTGTTTTCAACTATTTGTCAATATATCAAACTCAATGTGTAATATCCTGAACTTGACAATACATCAAGTATGTTTCTTTTAAAAGTGGCTTAAACCACAAACACAGCTTTTACCAGCCAAAgtacacacaatctcacacacacacatacagtgcaatcagaaagtattcagaccccttcactttttccacattttgttacagccttattctaaaattgatttaaaaaataaattttcctcatcgatctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016283 lncRNA downstream 2118 44621421 ~ 44623804 (-) True G893356
TU1016418 lncRNA downstream 7337 44618332 ~ 44618585 (-) True G893469
TU1016415 lncRNA downstream 9725 44615933 ~ 44616197 (-) True G893466
TU1016412 lncRNA downstream 16283 44609430 ~ 44609639 (-) True G893463
TU1016411 lncRNA downstream 17316 44608395 ~ 44608606 (-) True G893462
TU1016285 lncRNA upstream 1437 44637774 ~ 44639126 (-) True G893357
TU1016426 lncRNA upstream 18476 44654813 ~ 44655034 (-) True G893477
TU1016281 lncRNA upstream 19210 44655547 ~ 44657802 (-) True LOC110534017
TU1016447 lncRNA upstream 79961 44716298 ~ 44716554 (-) True G893497
TU1016460 lncRNA upstream 317843 44954180 ~ 44959512 (-) True G893508
XM_036990398.1 mRNA downstream 112624 44511489 ~ 44513298 (-) True LOC110534010
XM_021618618.2 mRNA downstream 306363 44312153 ~ 44319559 (-) True LOC110534001
XM_021618617.2 mRNA downstream 316944 44303605 ~ 44308978 (-) False LOC110534000
XM_021618614.2 mRNA downstream 324266 44294538 ~ 44301656 (-) False LOC110533996
XM_021618640.2 mRNA upstream 3908 44640245 ~ 44648066 (-) True LOC110534016
XM_036990412.1 mRNA upstream 19207 44655544 ~ 44715189 (-) False LOC110534017
XM_036990414.1 mRNA upstream 19207 44655544 ~ 44715189 (-) False LOC110534017
XM_036990410.1 mRNA upstream 19207 44655544 ~ 44750710 (-) False LOC110534017
XM_036990413.1 mRNA upstream 19207 44655544 ~ 44751419 (-) False LOC110534017
TU1016171 other downstream 316989 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 416658 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 914953 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 942002 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1378287 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 132113 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 374992 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1110978 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1110978 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1280942 45917279 ~ 45918339 (-) True G894917

Expression Profile