RNA id: XM_021618640.2


Basic Information

Item Value
RNA id XM_021618640.2
length 3207
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110534016
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44640245 ~ 44648066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGCCAATCACACATGAAACCATAAAAGACTGCCATGCAACCCCCACGAAAGTTAGTAGAATAAGCTGTTATTGGTGGTGGGAAATTGTGTTTCATACAGAAAgtacactttttcagttttttcGGCTTTTTTCCGCCTTCTCGCCGTTAAATTTAGTTCATGGGGATATCGAGGCCTTGCAGCCGGAATGGAGAGTTGTTTATGTACGAACCGGTCCACAGGGGTTAGGAGTGTATTGCATACAATGTGTTTGGACGGTAAGATGAAACCACCAATACCAGATCAATATCGCCATCTGCCCGCCTTTGGGCTAGCTATACCTCAAAATTGTAATAGGCGAAATCCAGTGCCAGAGTTTCCGGTATGAGGACGAGAACGAAAGGGGGTGTAGCGCATCTCTCGGATTCTACCATATCTGCACAAAGTCGCTGTAGCAGCCTATGGAACAGGCGATGTGAAGTGGTTACGTTTTGTGATGCAGGCACCTACGCATCGCCAAGCAGTGGGACTTTTTCGGCTTTTTACGCAACCCTGAATAGCCGACCCCTGCTCTGGGCAGATGAGAGATATTTTTGGTGAAAGTCAGGGCTGTCATAACGGATATCGGGAAACTGGGAGTTGATTAAAACTGTGGACATAATCCTTTTACCTCACCAAGAAACCTCCTCCGCAGCCAAAGTGTCAACCCTACATCCTGCTCACTGAAGCTCTGTTCCAAGAGAGTGATCTAGGCTTTGTTTGGTACTATTCATCATTTTAAAGCTGGCTGCAGAAGTAGCAGTCCTCCCTGATCACCAGACCTGATTTGACCTGTTAATATTTTAGCTCAGCCAGCCAGCTCTGCCTGgcctcctctccccaccacctcccctcacGTTGTTGCAGGAGCTGAGCCTCTGCTGCCCAGGGAGGGCTCCCGACATGTCCACCAAGGCGCCCATCTATCTGAAGCGGCGGAGCAGGAAGGGGAAGAAGGAGAAGCTGCGGGATATCCTTTCCTCTGACATGATCAGTCCTCCGCTGGGGGACTTCCGCCACACCATTCATATCGGGAGCGGCGGGGGGGACGATGACCTGTTTGGGGACCTGTCCTTCCTGCAGGGGAAGTTCCACCTTCTCCCTGGGCAGCAGGGCCACAACCTGTCTCAGCGTTCCTCCATGTACGCAGAGCCCTTCCAGTTCAGCCGTACTGCCAGCGATAGCGGACACACACCCTCCTCAGAGCGCTCCCCCCTGCTGAAGAACGCCCTCTCGCTGCCCGTCATCGAAGGGGTGCAGGCCATCACCCTACCAGTCACCTCTGCACCCTCCTCGGCCCGCCCCCATCCGCCTCAGAACGCGCCCCCTCCACCCAAGCCTCCCCGACTGCACCTGGATGACGAGATCCTGACGCCCCATCACCCAGGCCTGGACTCATCTTCTCCCTCACAGGCTCCCAGCAAGATGTCCCAGTTCTGCCCGCCCTCCCCCAGGTTGTCATCAGGCGAAGATGTGTGTATCCAGGACCCTTATCTGGATGATGGGGACCAGGAGCGCCCCTACCTGTCCCACGCAGGCTCCCTGCTCTCCCTGCACCTGGACCTGGGCCCCTCCATCCTGGACGACGTGCTGCAGATTATGGATAGCCAGCGCCTCAGTGGCCTCAACGGAACCTGTCTGCAGGGAGGGCGGCAGGAGCTCTACACCTGACCATGAGAAGCCCTCGGCCCTCTGTCCTCCTTACTGACCTCCTTAGCGTATAAGAGGAGGTTCTGACCTCAACCAAGCCTTGCTGGATTACAAGGCTGGATTTGTACAGTAGTACGCTCAAATGAAGTGCTTTTTTTCCTGGAACTTAACTTCAGTTGCTGTTAGTGTTTTAATTGGTATTGAATATCTTTCTACACTTTTCCATGCAAATTACTTAATATAGTAAGTACGAAATGAAGCGACCATGAGCCAAAAGCTGACACTGTTAAATCTCCTCTGCCCTTCCTCCAAAGAGGATATGAAGAAACCGGTGAAAGAATATACTGCTGGTCAGGAACTGAGGTCAGCATGTATCTGACTGGGATCATATTTGTCAGTGGGGGTGAAATGGTATTGTAAAACCTGAAGGTCacagtcttttttttttactgcacctGAGCTGTGGACTACTGTCCGTGCTCCTGAGATCACAGTTTGGTGTCTGTGTCACACAGATTTATCCAGCTTACAAAGCTGTTCTGGAACTGACATTCTATTCATGGTTGGATATACATTATCAAAGACACGCTTATGGAAAGATGAACTGTACAACAGGGAGGGTGTCTGCCGAgttgcagtgcctcagaccgctgcgcatctcagtgcaagaggcatcactacagaccctggttcgattccaggctgtatcacaaccggccgtgattgggagtcccatagggcggcgcacaattggcccagcgtcgtccgggtttggccggggtaggccgtcattgtaaataagaatttgttcttaacggacttgcctagttaaataaaggttatatatatttgttttaaatgTCTGCAAGGACAAAGATCCAGAGTGGTAGAGGAGGTCACATCCCTGAGTCAGATGTGTCATTTTCCAGCTTTTGTTATTTTTAATGCAAGAATGTGAATGCCGTAACTTTGCATCAGAAGAGACGATGAGTTTTGGAGAGCTCAGTTCTATATCTTTTGACGTTTCAGCAGATCTACAGAGAGCTGCTTAAACTGGCCCTCGTGCTCTGGTAATTGAGATGTTGAGCACGTTTGGAGATTATCTCACCGCTGTAGCCAAGTCCTTGTGTTGCTCAAACTATCTCTGTACCAACACAGTGAAGTTCTGAATCAGACTTTTACCAATGTTATTTGGAATTCTTGTTACAAGATACAGGGAGAGGGTTTTAATTTGATCCAgattgctacagcaggaaaataatactgcagcaacaggaaatgtgaattattgtgtggatcatcattaatggacattcttgtaggggttgatacattttaaatCTGCAAtttgtggaaattacaaactaaTACAGTACAGGATAGAGTTGCCAGATCACCGTTTGCTTCATggagtatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttatttcgaCTACTTtatacatggtagaataatagtgaagacatcaaaactatgaaatagcacatgtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1016285 lncRNA downstream 1119 44637774 ~ 44639126 (-) True G893357
TU1016283 lncRNA downstream 16441 44621421 ~ 44623804 (-) True G893356
TU1016418 lncRNA downstream 21660 44618332 ~ 44618585 (-) True G893469
TU1016415 lncRNA downstream 24048 44615933 ~ 44616197 (-) True G893466
TU1016412 lncRNA downstream 30606 44609430 ~ 44609639 (-) True G893463
TU1016426 lncRNA upstream 6747 44654813 ~ 44655034 (-) True G893477
TU1016281 lncRNA upstream 7481 44655547 ~ 44657802 (-) True LOC110534017
TU1016447 lncRNA upstream 68232 44716298 ~ 44716554 (-) True G893497
TU1016460 lncRNA upstream 306114 44954180 ~ 44959512 (-) True G893508
TU1016766 lncRNA upstream 545063 45193129 ~ 45280890 (-) True G893782
XM_021618636.2 mRNA downstream 3908 44625922 ~ 44636337 (-) False LOC110534015
XM_021618639.2 mRNA downstream 3908 44625922 ~ 44636337 (-) False LOC110534015
XR_005053675.1 mRNA downstream 5435 44626935 ~ 44634810 (-) True LOC110534015
XM_036990407.1 mRNA downstream 5438 44625922 ~ 44634807 (-) False LOC110534015
XM_036990408.1 mRNA downstream 5441 44625922 ~ 44634804 (-) False LOC110534015
XM_036990412.1 mRNA upstream 7478 44655544 ~ 44715189 (-) False LOC110534017
XM_036990414.1 mRNA upstream 7478 44655544 ~ 44715189 (-) False LOC110534017
XM_036990410.1 mRNA upstream 7478 44655544 ~ 44750710 (-) False LOC110534017
XM_036990413.1 mRNA upstream 7478 44655544 ~ 44751419 (-) False LOC110534017
XM_036990409.1 mRNA upstream 7478 44655544 ~ 44751420 (-) False LOC110534017
TU1016171 other downstream 331312 44306219 ~ 44308933 (-) True LOC110534000
TU1016035 other downstream 430981 44199396 ~ 44209264 (-) True LOC110533117
TU1015858 other downstream 929276 43710485 ~ 43710969 (-) True G892965
TU1015844 other downstream 956325 43683574 ~ 43683920 (-) True LOC110533962
TU1014242 other downstream 1392610 43193682 ~ 43247635 (-) True LOC110533954
TU1016497 other upstream 120384 44768450 ~ 44769072 (-) True G893541
TU1016641 other upstream 363263 45011329 ~ 45016047 (-) True LOC110534025
TU1018024 other upstream 1099249 45747315 ~ 45750331 (-) False LOC110534046
TU1018025 other upstream 1099249 45747315 ~ 45747953 (-) True LOC110534046
TU1018170 other upstream 1269213 45917279 ~ 45918339 (-) True G894917

Expression Profile